You also need to apply bugfix.all from AmberTools 1.5 -- this is the patch
that would have fixed your problem.
HTH,
Jason
On Wed, Jun 6, 2012 at 8:51 AM, arun kumar <arunjones.kumar89.gmail.com>wrote:
> Yes i applied the patch bugfix.all for amber11.
> from your reply i hope that i wont get errors in my MD simulation. if i get
> i will contact.
> once again Thanks for your help.
>
> On Wed, Jun 6, 2012 at 4:50 PM, Jason Swails <jason.swails.gmail.com>
> wrote:
>
> > Did you apply the bug fixes?
> >
> > And certain test failures are expected for Amber 11 and AmberTools 1.5.
> >
> > HTH,
> > Jason
> >
> > On Wed, Jun 6, 2012 at 2:35 AM, arun kumar <arunjones.kumar89.gmail.com
> > >wrote:
> >
> > > Thanks Jason,
> > >
> > > As you said , after running "AT15_Amber11.py" i did nt find the error
> and
> > > its successfully installed.
> > > but, when I done the tests some of tests got failed and some of them
> got
> > > errors, do they reflect in my MD results too..?
> > > here iam attaching .log and.diff also.
> > >
> > > Finished serial test suite for Amber 11 at Wed Jun 6 17:05:03 IST
> 2012.
> > >
> > > make[1]: Target `test.serial' not remade because of errors.
> > > make[1]: Leaving directory `/usr/local/amber11/test'
> > > 361 file comparisons passed
> > > 16 file comparisons failed
> > > 3 tests experienced errors
> > > Test log file saved as logs/test_amber_serial/2012-06-06_16-42-05.log
> > > Test diffs file saved as
> logs/test_amber_serial/2012-06-06_16-42-05.diff
> > > bash-4.1#
> > >
> > > _______________________________________________
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> > > AMBER.ambermd.org
> > > http://lists.ambermd.org/mailman/listinfo/amber
> > >
> > >
> >
> >
> > --
> > Jason M. Swails
> > Quantum Theory Project,
> > University of Florida
> > Ph.D. Candidate
> > 352-392-4032
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Arun Kumar Somavarapu
> Project-JRF
> Dr. Prasanna's lab
> TMC, ACTREC
> Navi Mumbai-410210
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Wed Jun 06 2012 - 06:30:02 PDT
