Dear Amber Users,
I am currently studying protein dynamics and was looking into a particular
loop movement in the protein. I had two different simulation temperatures,
at high temperature I could clearly observe the desired changes in the loop
within a short time frame of 10ns, however at 300K (i.e., room temp) even
after running for nearly 70ns, the structure remains relatively dormant,
with hardly any change. Can u please suggest some methods by which I can
overcome the current problem.
Thanks in advance
Soumya
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Received on Fri Jun 01 2012 - 04:30:03 PDT
