Hi,
I am trying to install amber11 + amber tools 1.5 with cuda. I applied all
bugfixes for AT and Amber11. I can install serial version perfectly but the
cuda-enabled installtion stuck with the following error.
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xa6d):
undefined reference to `cudaConfigureCall'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xa7a):
undefined reference to `cudaThreadSynchronize'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xa81):
undefined reference to `cudaGetLastError'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xadf):
undefined reference to `cudaConfigureCall'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xaf8):
undefined reference to `cudaLaunch'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xb60):
undefined reference to `cudaConfigureCall'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xb7d):
undefined reference to `cudaLaunch'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xbd9):
undefined reference to `cudaConfigureCall'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xbf6):
undefined reference to `cudaLaunch'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xc11):
undefined reference to `cudaLaunch'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xc1d):
undefined reference to `cudaGetErrorString'
./cuda/cuda.a(kNeighborList.o): In function `kNLBuildNeighborList':
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xcf8):
undefined reference to `cudaConfigureCall'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xd09):
undefined reference to `cudaGetLastError'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xd92):
undefined reference to `cudaConfigureCall'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xdaf):
undefined reference to `cudaLaunch'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xe36):
undefined reference to `cudaConfigureCall'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xe53):
undefined reference to `cudaLaunch'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xeb2):
undefined reference to `cudaConfigureCall'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xecf):
undefined reference to `cudaLaunch'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xef1):
undefined reference to `cudaLaunch'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xf86):
undefined reference to `cudaConfigureCall'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xfa3):
undefined reference to `cudaLaunch'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x101a):
undefined reference to `cudaConfigureCall'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x1037):
undefined reference to `cudaLaunch'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x10aa):
undefined reference to `cudaConfigureCall'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x10c7):
undefined reference to `cudaLaunch'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x1122):
undefined reference to `cudaConfigureCall'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x113f):
undefined reference to `cudaLaunch'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x114b):
undefined reference to `cudaGetErrorString'
./cuda/cuda.a(kNeighborList.o): In function `kNLSkinTest':
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x11e3):
undefined reference to `cudaConfigureCall'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x11ec):
undefined reference to `cudaGetLastError'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x11f5):
undefined reference to `cudaThreadSynchronize'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x1231):
undefined reference to `cudaLaunch'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x123a):
undefined reference to `cudaGetErrorString'
./cuda/cuda.a(kNeighborList.o): In function
`__device_stub__Z20kNLRemapImage_kernelPj(unsigned int*)':
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x12a6):
undefined reference to `cudaSetupArgument'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x12bf):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kNeighborList.o): In function
`__device_stub__Z33kNLCalculateCellBoundaries_kernelPj(unsigned int*)':
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x1326):
undefined reference to `cudaSetupArgument'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x133f):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kNeighborList.o): In function `__cudaUnregisterBinaryUtil()':
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x8):
undefined reference to `__cudaUnregisterFatBinary'
./cuda/cuda.a(kNeighborList.o): In function `kNLSkinTest_kernel()':
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x21):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kNeighborList.o): In function
`kNLGenerateSpatialHash_kernel()':
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x41):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kNeighborList.o): In function
`kNLRemapLocalInteractions_kernel()':
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x61):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kNeighborList.o): In function
`kNLBuildNeighborListOrthogonal32_kernel()':
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x81):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kNeighborList.o): In function
`kNLCalculateCellCoordinates_kernel()':
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xa1):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kNeighborList.o):tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xc1):
more undefined references to `cudaLaunch' follow
./cuda/cuda.a(kNeighborList.o): In function `kNLGenerateSpatialHash':
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x3d7):
undefined reference to `cudaThreadSynchronize'
./cuda/cuda.a(kNeighborList.o): In function `kNLRemapLocalInteractions':
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x747):
undefined reference to `cudaThreadSynchronize'
./cuda/cuda.a(kNeighborList.o): In function `kNLClearCellBoundaries':
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x807):
undefined reference to `cudaThreadSynchronize'
./cuda/cuda.a(kNeighborList.o): In function `kNLClearExclusionMasks':
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x9a7):
undefined reference to `cudaThreadSynchronize'
./cuda/cuda.a(kNeighborList.o): In function `kNLBuildNeighborList':
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0xd1e):
undefined reference to `cudaThreadSynchronize'
./cuda/cuda.a(kNeighborList.o): In function
`__device_stub__Z29kNLGenerateSpatialHash_kernelv()':
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x1281):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kNeighborList.o): In function
`__device_stub__Z32kNLRemapLocalInteractions_kernelv()':
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x12e1):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kNeighborList.o): In function
`__device_stub__Z29kNLClearCellBoundaries_kernelv()':
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x1301):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kNeighborList.o): In function
`__device_stub__Z29kNLClearExclusionMasks_kernelv()':
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x1361):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kNeighborList.o): In function
`__device_stub__Z34kNLCalculateCellCoordinates_kernelv()':
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x1381):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kNeighborList.o):tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text+0x13a1):
more undefined references to `cudaLaunch' follow
./cuda/cuda.a(kNeighborList.o): In function
`__sti____cudaRegisterAll_59_tmpxft_00000a7b_00000000_6_kNeighborList_compute_20_cpp1_ii_e74a63a9()':
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text.startup+0xa):
undefined reference to `__cudaRegisterFatBinary'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text.startup+0x60):
undefined reference to `__cudaRegisterFunction'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text.startup+0xa5):
undefined reference to `__cudaRegisterFunction'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text.startup+0xea):
undefined reference to `__cudaRegisterFunction'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text.startup+0x12f):
undefined reference to `__cudaRegisterFunction'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text.startup+0x174):
undefined reference to `__cudaRegisterFunction'
./cuda/cuda.a(kNeighborList.o):tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text.startup+0x1b9):
more undefined references to `__cudaRegisterFunction' follow
./cuda/cuda.a(kNeighborList.o): In function
`__sti____cudaRegisterAll_59_tmpxft_00000a7b_00000000_6_kNeighborList_compute_20_cpp1_ii_e74a63a9()':
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text.startup+0x56b):
undefined reference to `__cudaRegisterVar'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text.startup+0x59c):
undefined reference to `__cudaRegisterVar'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text.startup+0x5cd):
undefined reference to `__cudaRegisterVar'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text.startup+0x5fe):
undefined reference to `__cudaRegisterVar'
tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text.startup+0x62f):
undefined reference to `__cudaRegisterVar'
./cuda/cuda.a(kNeighborList.o):tmpxft_00000a7b_00000000-4_kNeighborList.compute_20.cudafe1.cpp:(.text.startup+0x660):
more undefined references to `__cudaRegisterVar' follow
./cuda/cuda.a(kPMEInterpolation.o): In function
`kPMEScalarSumRC_kernel(double, double)':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x20a):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x230):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x249):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kPMEInterpolation.o): In function
`kPMEScalarSumRCEnergyVirial_kernel(double, double)':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x27a):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x2a0):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x2b9):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kPMEInterpolation.o): In function
`kPMEScalarSumRCVirial_kernel(double, double)':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x2ea):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x310):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x329):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kPMEInterpolation.o): In function
`kPMEScalarSumRCEnergy_kernel(double, double)':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x35a):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x380):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x399):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kPMEInterpolation.o): In function `SetkPMEInterpolationSim':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x3ce):
undefined reference to `cudaMemcpyToSymbol'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x3de):
undefined reference to `cudaGetErrorString'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x3fc):
undefined reference to `cudaThreadExit'
./cuda/cuda.a(kPMEInterpolation.o): In function `GetkPMEInterpolationSim':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x42e):
undefined reference to `cudaMemcpyFromSymbol'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x43e):
undefined reference to `cudaGetErrorString'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x45c):
undefined reference to `cudaThreadExit'
./cuda/cuda.a(kPMEInterpolation.o): In function `kPMEGetGridWeights':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x4ee):
undefined reference to `cudaConfigureCall'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x501):
undefined reference to `cudaGetLastError'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x5a2):
undefined reference to `cudaConfigureCall'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x5bf):
undefined reference to `cudaLaunch'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x617):
undefined reference to `cudaConfigureCall'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x634):
undefined reference to `cudaLaunch'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x6a1):
undefined reference to `cudaConfigureCall'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x6be):
undefined reference to `cudaLaunch'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x744):
undefined reference to `cudaConfigureCall'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x761):
undefined reference to `cudaLaunch'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x7cc):
undefined reference to `cudaConfigureCall'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x7e9):
undefined reference to `cudaLaunch'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x859):
undefined reference to `cudaConfigureCall'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x876):
undefined reference to `cudaLaunch'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x8c9):
undefined reference to `cudaConfigureCall'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x8e6):
undefined reference to `cudaLaunch'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x901):
undefined reference to `cudaLaunch'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x90d):
undefined reference to `cudaGetErrorString'
./cuda/cuda.a(kPMEInterpolation.o): In function `kPMEClearChargeGridBuffer':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x9b7):
undefined reference to `cudaConfigureCall'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x9c0):
undefined reference to `cudaGetLastError'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x9f2):
undefined reference to `cudaMemset'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xa11):
undefined reference to `cudaLaunch'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xa1a):
undefined reference to `cudaGetErrorString'
./cuda/cuda.a(kPMEInterpolation.o): In function
`kPMEReduceChargeGridBuffer':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xac7):
undefined reference to `cudaConfigureCall'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xad4):
undefined reference to `cudaGetLastError'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xb3f):
undefined reference to `cudaConfigureCall'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xb58):
undefined reference to `cudaLaunch'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xb79):
undefined reference to `cudaLaunch'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xb85):
undefined reference to `cudaGetErrorString'
./cuda/cuda.a(kPMEInterpolation.o): In function `PMEInitKernels':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xbcb):
undefined reference to `cudaFuncSetCacheConfig'
./cuda/cuda.a(kPMEInterpolation.o): In function `kPMEFillChargeGridBuffer':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xc58):
undefined reference to `cudaConfigureCall'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xc61):
undefined reference to `cudaGetLastError'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xcd6):
undefined reference to `cudaConfigureCall'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xcef):
undefined reference to `cudaLaunch'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xd4d):
undefined reference to `cudaConfigureCall'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xd6a):
undefined reference to `cudaLaunch'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xdc5):
undefined reference to `cudaConfigureCall'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xdd6):
undefined reference to `cudaGetErrorString'
./cuda/cuda.a(kPMEInterpolation.o): In function `kPMEScalarSumRC':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xe68):
undefined reference to `cudaConfigureCall'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xe75):
undefined reference to `cudaGetLastError'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xe82):
undefined reference to `cudaThreadSynchronize'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xed9):
undefined reference to `cudaConfigureCall'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xf05):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xf21):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xf3e):
undefined reference to `cudaLaunch'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xf74):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xf90):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xfad):
undefined reference to `cudaLaunch'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xfb9):
undefined reference to `cudaGetErrorString'
./cuda/cuda.a(kPMEInterpolation.o): In function `kPMEScalarSumRCEnergy':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x1058):
undefined reference to `cudaConfigureCall'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x1065):
undefined reference to `cudaGetLastError'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x1072):
undefined reference to `cudaThreadSynchronize'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x10c9):
undefined reference to `cudaConfigureCall'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x10f5):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x1111):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x112e):
undefined reference to `cudaLaunch'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x1164):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x1180):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x119d):
undefined reference to `cudaLaunch'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x11a9):
undefined reference to `cudaGetErrorString'
./cuda/cuda.a(kPMEInterpolation.o): In function `kPMEGradSum':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x1260):
undefined reference to `cudaBindTexture'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x12d2):
undefined reference to `cudaConfigureCall'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x12df):
undefined reference to `cudaGetLastError'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x12f1):
undefined reference to `cudaThreadSynchronize'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x1369):
undefined reference to `cudaConfigureCall'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x1386):
undefined reference to `cudaLaunch'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x13a1):
undefined reference to `cudaLaunch'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x13ad):
undefined reference to `cudaGetErrorString'
./cuda/cuda.a(kPMEInterpolation.o): In function
`__device_stub__Z28kPMEScalarSumRCEnergy_kerneldd(double, double)':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x159c):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x15be):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x15d7):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kPMEInterpolation.o): In function
`__device_stub__Z22kPMEScalarSumRC_kerneldd(double, double)':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x15fc):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x161e):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x1637):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kPMEInterpolation.o): In function
`__device_stub__Z34kPMEScalarSumRCEnergyVirial_kerneldd(double, double)':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x165c):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x167e):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x1697):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kPMEInterpolation.o): In function
`__device_stub__Z28kPMEScalarSumRCVirial_kerneldd(double, double)':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x16bc):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x16de):
undefined reference to `cudaSetupArgument'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x16f7):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kPMEInterpolation.o): In function
`__cudaUnregisterBinaryUtil()':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x8):
undefined reference to `__cudaUnregisterFatBinary'
./cuda/cuda.a(kPMEInterpolation.o): In function
`kPMEGradSum64Virial_kernel()':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x21):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kPMEInterpolation.o): In function
`kPMEGetGridWeights_kernel()':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x41):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kPMEInterpolation.o): In function
`kPMEGetGridWeightsOrthogonal_kernel()':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x61):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kPMEInterpolation.o): In function
`kPMEGetGridWeightsNTP_kernel()':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x81):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kPMEInterpolation.o): In function
`kPMEGetGridWeightsOrthogonalNTP_kernel()':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xa1):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kPMEInterpolation.o):tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xc1):
more undefined references to `cudaLaunch' follow
./cuda/cuda.a(kPMEInterpolation.o): In function `kPMEGetGridWeights':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x515):
undefined reference to `cudaThreadSynchronize'
./cuda/cuda.a(kPMEInterpolation.o): In function `kPMEClearChargeGridBuffer':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x9cd):
undefined reference to `cudaThreadSynchronize'
./cuda/cuda.a(kPMEInterpolation.o): In function
`kPMEReduceChargeGridBuffer':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xae5):
undefined reference to `cudaThreadSynchronize'
./cuda/cuda.a(kPMEInterpolation.o): In function `PMEInitKernels':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xbde):
undefined reference to `cudaFuncSetCacheConfig'
./cuda/cuda.a(kPMEInterpolation.o): In function `kPMEFillChargeGridBuffer':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0xc75):
undefined reference to `cudaThreadSynchronize'
./cuda/cuda.a(kPMEInterpolation.o): In function `kPMEGradSum':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x1300):
undefined reference to `cudaUnbindTexture'
./cuda/cuda.a(kPMEInterpolation.o): In function
`__device_stub__Z25kPMEGetGridWeights_kernelv()':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x13f1):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kPMEInterpolation.o): In function
`__device_stub__Z35kPMEGetGridWeightsOrthogonal_kernelv()':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x1411):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kPMEInterpolation.o): In function
`__device_stub__Z28kPMEGetGridWeightsNTP_kernelv()':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x1431):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kPMEInterpolation.o): In function
`__device_stub__Z38kPMEGetGridWeightsOrthogonalNTP_kernelv()':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x1451):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kPMEInterpolation.o): In function
`__device_stub__Z30kPMEGetGridWeightsSmall_kernelv()':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x1471):
undefined reference to `cudaLaunch'
./cuda/cuda.a(kPMEInterpolation.o):tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text+0x1491):
more undefined references to `cudaLaunch' follow
./cuda/cuda.a(kPMEInterpolation.o): In function
`__sti____cudaRegisterAll_63_tmpxft_00000ac6_00000000_6_kPMEInterpolation_compute_20_cpp1_ii_821c97be()':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text.startup+0xa):
undefined reference to `__cudaRegisterFatBinary'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text.startup+0x60):
undefined reference to `__cudaRegisterFunction'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text.startup+0xa5):
undefined reference to `__cudaRegisterFunction'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text.startup+0xea):
undefined reference to `__cudaRegisterFunction'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text.startup+0x12f):
undefined reference to `__cudaRegisterFunction'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text.startup+0x174):
undefined reference to `__cudaRegisterFunction'
./cuda/cuda.a(kPMEInterpolation.o):tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text.startup+0x1b9):
more undefined references to `__cudaRegisterFunction' follow
./cuda/cuda.a(kPMEInterpolation.o): In function
`__sti____cudaRegisterAll_63_tmpxft_00000ac6_00000000_6_kPMEInterpolation_compute_20_cpp1_ii_821c97be()':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text.startup+0x56b):
undefined reference to `__cudaRegisterVar'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text.startup+0x59c):
undefined reference to `__cudaRegisterVar'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text.startup+0x5cd):
undefined reference to `__cudaRegisterVar'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text.startup+0x5fe):
undefined reference to `__cudaRegisterVar'
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text.startup+0x62f):
undefined reference to `__cudaRegisterVar'
./cuda/cuda.a(kPMEInterpolation.o):tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text.startup+0x660):
more undefined references to `__cudaRegisterVar' follow
./cuda/cuda.a(kPMEInterpolation.o): In function
`__sti____cudaRegisterAll_63_tmpxft_00000ac6_00000000_6_kPMEInterpolation_compute_20_cpp1_ii_821c97be()':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text.startup+0x6eb):
undefined reference to `__cudaRegisterTexture'
./cuda/cuda.a(kPMEInterpolation.o): In function
`_GLOBAL__sub_I_SetkPMEInterpolationSim':
tmpxft_00000ac6_00000000-4_kPMEInterpolation.compute_20.cudafe1.cpp:(.text.startup+0x74c):
undefined reference to `cudaCreateChannelDesc'
./cuda/cuda.a(gputypes.o): In function `_gpuContext::~_gpuContext()':
gputypes.cpp:(.text+0x18a5): undefined reference to `cufftDestroy'
gputypes.cpp:(.text+0x18b0): undefined reference to `cufftDestroy'
collect2: ld returned 1 exit status
make[2]: *** [pmemd.cuda] Error 1
make[2]: Leaving directory `/usr/local/amber11/src/pmemd/src'
make[1]: *** [cuda] Error 2
make[1]: Leaving directory `/usr/local/amber11/src/pmemd'
make: *** [cuda] Error 2
Kindly help me to sort out this.
Thank you
Rajeswari A
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Received on Thu May 31 2012 - 01:00:03 PDT
