Re: [AMBER] how to introduce Zn2+ in amber

From: Marc van der Kamp <marcvanderkamp.gmail.com>
Date: Wed, 23 May 2012 10:01:10 +0100

Hi,
(try not to post your problem twice to the list - have a little patience
for someone to reply)
You are dealing with a metal centre; tutorial A1 is not really applicable
to this situation.
Instead, check out MCPB in the AmberTools manual (and the links given
there).
--Marc

On 23 May 2012 09:50, Sanjib Paul <sanjib88paul.gmail.com> wrote:

> Hii..
> I want to set up HCA II in amber. But i can't introduce Zn2+ to
> amber. I have followed TUTORIAL A1 old "buliding your own custom
> residue". I have created a pdb file of zinc, tried to add atom type in
> unit editor. But, I can't do it. Actually, I can't select any menu in
> unit editor.
> What is actually happening? Please inform me.
>
> sanjib
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Received on Wed May 23 2012 - 02:30:03 PDT
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