[AMBER] apply an external force

From: mehdi bagherpoor <ms.nightsky.gmail.com>
Date: Sat, 12 May 2012 18:48:11 +0430

Dear all

I am using Amber software for DNA simulation (Amber10). Specially in my
project I need to exert external force between two residue to these two
residue separate from each other.

The DNA that I want to simulate has 17 bp and I need exert external force
between 1 and 34 residues to these
two residue separate from each other.

I will use umbrella sampling. but I don't know how write dist.RST file?

Now I am wandering if you could advise me a method.

I would appreciate your help.
Looking forward to hearing from you.
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Received on Sat May 12 2012 - 07:30:03 PDT
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