[AMBER] RNA xleap

From: Charles Johnson <cjohns98.slu.edu>
Date: Fri, 11 May 2012 11:18:53 -0500

Dear all,

I am trying to model an RNA duplex using AMBER 11. When trying to create the water + Na ion .prmtop and .inpcrd files in xleap it keeps giving "Parameter file was not saved" error. How can I save these files? I am using leaprc.ff10 when starting xleap. I am able to create the .prmtop and .inpcrd files for my duplex in vacuum.

Any help would be greatly appreciated.

Thanks,
Charlie
  
----
Charles A. Johnson
Ph.D. Candidate
Department of Chemistry
Saint Louis University
Monsanto Hall 214
3501 Laclede Ave.
St. Louis, MO  63103-2010
Fax: (314) 977-2521
Email: cjohns98.slu.edu
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Received on Fri May 11 2012 - 09:30:03 PDT
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