Dear All,
I have generated DNA duplex (perfect matched) using NAB (AmberTools 1.5) with the following input:
----------------------------------------------
molecule m;
m = fd_helix( "abdna", "aagaaa", "dna" );
putpdb( "nuc.pdb", m, "-wwpdb");
-------------------------------------------------
I got the duplex of sequence
5'-AAGAAA-3'
3'-TTCTTT-5'
Next I would like to generate the single mismatch of the 3rd pair as
5'-AAGAAA-3'
3'-TTATTT-5'
Could anyone please give me the input for NAB?
Thank you very much in advance for your kindness.
Regards,
Natt
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Received on Thu May 10 2012 - 21:00:03 PDT
