Hi AMBER,
I have installed amber11 in serial using gnu compiler. But when compiling it in parallel using intel compiler and openmpi, it is giving following errors:
_xermsg.f:(.text+0x1c1): undefined reference to `_gfortran_copy_string'
_xermsg.f:(.text+0x1dd): undefined reference to `_gfortran_copy_string'
_xermsg.f:(.text+0x1f6): undefined reference to `_gfortran_copy_string'
_xermsg.f:(.text+0x34f): undefined reference to `_gfortran_st_write'
_xermsg.f:(.text+0x35f): undefined reference to `_gfortran_transfer_integer'
_xermsg.f:(.text+0x36d): undefined reference to `_gfortran_st_write_done'
_xermsg.f:(.text+0x3e5): undefined reference to `_gfortran_internal_malloc'
_xermsg.f:(.text+0x410): undefined reference to `_gfortran_concat_string'
_xermsg.f:(.text+0x438): undefined reference to `_gfortran_internal_free'
_xermsg.f:(.text+0x5be): undefined reference to `_gfortran_copy_string'
_xermsg.f:(.text+0x5f4): undefined reference to `_gfortran_copy_string'
_xermsg.f:(.text+0x61a): undefined reference to `_gfortran_copy_string'
_xermsg.f:(.text+0x657): undefined reference to `_gfortran_copy_string'
_xermsg.f:(.text+0x67d): undefined reference to `_gfortran_copy_string'
/home/yjzhao/amber11/lib/libFpbsa.a(xermsg.o):_xermsg.f:(.text+0x6ef): more undefined references to `_gfortran_copy_string' follow
/home/yjzhao/amber11/lib/libFpbsa.a(xerprn.o): In function `xerprn_':
_xerprn.f:(.text+0x16b): undefined reference to `_gfortran_st_write'
_xerprn.f:(.text+0x17e): undefined reference to `_gfortran_transfer_character'
_xerprn.f:(.text+0x186): undefined reference to `_gfortran_st_write_done'
_xerprn.f:(.text+0x21b): undefined reference to `_gfortran_string_index'
_xerprn.f:(.text+0x26c): undefined reference to `_gfortran_compare_string'
_xerprn.f:(.text+0x2af): undefined reference to `_gfortran_copy_string'
_xerprn.f:(.text+0x32b): undefined reference to `_gfortran_st_write'
_xerprn.f:(.text+0x33e): undefined reference to `_gfortran_transfer_character'
_xerprn.f:(.text+0x346): undefined reference to `_gfortran_st_write_done'
_xerprn.f:(.text+0x3c5): undefined reference to `_gfortran_compare_string'
_xerprn.f:(.text+0x415): undefined reference to `_gfortran_copy_string'
/home/yjzhao/amber11/lib/libFpbsa.a(xersve.o): In function `xersve_':
_xersve.f:(.text+0x4a): undefined reference to `_gfortran_copy_string'
_xersve.f:(.text+0x6b): undefined reference to `_gfortran_copy_string'
_xersve.f:(.text+0x87): undefined reference to `_gfortran_copy_string'
_xersve.f:(.text+0xd9): undefined reference to `_gfortran_compare_string'
_xersve.f:(.text+0xfb): undefined reference to `_gfortran_compare_string'
_xersve.f:(.text+0x119): undefined reference to `_gfortran_compare_string'
_xersve.f:(.text+0x236): undefined reference to `_gfortran_st_write'
_xersve.f:(.text+0x23e): undefined reference to `_gfortran_st_write_done'
_xersve.f:(.text+0x2a2): undefined reference to `_gfortran_st_write'
_xersve.f:(.text+0x2b6): undefined reference to `_gfortran_transfer_character'
_xersve.f:(.text+0x2d6): undefined reference to `_gfortran_transfer_character'
_xersve.f:(.text+0x2e6): undefined reference to `_gfortran_transfer_character'
_xersve.f:(.text+0x2fe): undefined reference to `_gfortran_transfer_integer'
_xersve.f:(.text+0x312): undefined reference to `_gfortran_transfer_integer'
_xersve.f:(.text+0x326): undefined reference to `_gfortran_transfer_integer'
_xersve.f:(.text+0x32e): undefined reference to `_gfortran_st_write_done'
_xersve.f:(.text+0x381): undefined reference to `_gfortran_st_write'
_xersve.f:(.text+0x389): undefined reference to `_gfortran_st_write_done'
_xersve.f:(.text+0x3f6): undefined reference to `_gfortran_copy_string'
_xersve.f:(.text+0x414): undefined reference to `_gfortran_copy_string'
_xersve.f:(.text+0x437): undefined reference to `_gfortran_copy_string'
_xersve.f:(.text+0x4aa): undefined reference to `_gfortran_st_write'
_xersve.f:(.text+0x4bc): undefined reference to `_gfortran_transfer_integer'
_xersve.f:(.text+0x4c4): undefined reference to `_gfortran_st_write_done'
/home/yjzhao/amber11/lib/libFpbsa.a(isdbcg.o): In function `isdbcg_':
_isdbcg.f:(.text+0xe7): undefined reference to `_gfortran_st_write'
_isdbcg.f:(.text+0xf7): undefined reference to `_gfortran_transfer_integer'
_isdbcg.f:(.text+0x10c): undefined reference to `_gfortran_transfer_integer'
_isdbcg.f:(.text+0x114): undefined reference to `_gfortran_st_write_done'
_isdbcg.f:(.text+0x14d): undefined reference to `_gfortran_st_write'
_isdbcg.f:(.text+0x162): undefined reference to `_gfortran_transfer_integer'
_isdbcg.f:(.text+0x172): undefined reference to `_gfortran_transfer_real'
_isdbcg.f:(.text+0x17a): undefined reference to `_gfortran_st_write_done'
_isdbcg.f:(.text+0x26f): undefined reference to `_gfortran_st_write'
_isdbcg.f:(.text+0x284): undefined reference to `_gfortran_transfer_integer'
_isdbcg.f:(.text+0x294): undefined reference to `_gfortran_transfer_real'
_isdbcg.f:(.text+0x2a9): undefined reference to `_gfortran_transfer_real'
_isdbcg.f:(.text+0x2be): undefined reference to `_gfortran_transfer_real'
_isdbcg.f:(.text+0x2c6): undefined reference to `_gfortran_st_write_done'
/home/yjzhao/amber11/lib/libFpbsa.a(isdgmr.o): In function `isdgmr_':
_isdgmr.f:(.text+0x238): undefined reference to `_gfortran_st_write'
_isdgmr.f:(.text+0x24d): undefined reference to `_gfortran_transfer_integer'
_isdgmr.f:(.text+0x283): undefined reference to `_gfortran_transfer_real'
_isdgmr.f:(.text+0x293): undefined reference to `_gfortran_transfer_real'
_isdgmr.f:(.text+0x29b): undefined reference to `_gfortran_st_write_done'
_isdgmr.f:(.text+0x4fc): undefined reference to `_gfortran_st_write'
_isdgmr.f:(.text+0x511): undefined reference to `_gfortran_transfer_integer'
_isdgmr.f:(.text+0x526): undefined reference to `_gfortran_transfer_integer'
_isdgmr.f:(.text+0x53b): undefined reference to `_gfortran_transfer_real'
_isdgmr.f:(.text+0x543): undefined reference to `_gfortran_st_write_done'
_isdgmr.f:(.text+0x797): undefined reference to `_gfortran_st_write'
_isdgmr.f:(.text+0x7a7): undefined reference to `_gfortran_transfer_integer'
_isdgmr.f:(.text+0x7bc): undefined reference to `_gfortran_transfer_integer'
_isdgmr.f:(.text+0x7d1): undefined reference to `_gfortran_transfer_integer'
_isdgmr.f:(.text+0x7e6): undefined reference to `_gfortran_transfer_integer'
_isdgmr.f:(.text+0x7ee): undefined reference to `_gfortran_st_write_done'
/home/yjzhao/amber11/lib/libFpbsa.a(i1mach.o): In function `i1mach_':
_i1mach.f:(.text+0x5c): undefined reference to `_gfortran_st_write'
_i1mach.f:(.text+0x64): undefined reference to `_gfortran_st_write_done'
_i1mach.f:(.text+0x6e): undefined reference to `_gfortran_stop_numeric'
/home/yjzhao/amber11/lib/libFpbsa.a(xerhlt.o): In function `xerhlt_':
_xerhlt.f:(.text+0xa): undefined reference to `_gfortran_stop_numeric'
make: *** [sander.MPI] Error 1
What may be the cause of the problem?
Thank you,
Yunjie
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu May 10 2012 - 03:00:05 PDT
