Hello:
I am trying to convert CHARMM-GUI output into Amber12 format by command:
charmmlipid2amber.x step5_assembly.pdb amber.pdb
but it said:
Input PDB file: step5_assembly.pdb
Output PDB file: amber.pdb
*** STAGE 1 : STRIP REMARKS AND END STATEMENTS ***
*** STAGE 2 : STRIP AND SAVE WATER ***
Currently supported water: TIP3
Found TIP3 Water
*** STAGE 3 : STRIP AND SAVE IONS ***
Currently supported ions: CLA, POT, SOD
Found Chlorine Ions
Found Potassium Ions
Ions were found.
*** STAGE 4 : STRIP INDIVIDUAL LIPIDS TO SEPARATE FILES ***
Currently supported lipids: DPPC DPPE DPPS DPPG DPPA
DOPC DOPE DOPS DOPG DOPA
POPC POPE POPS POPG POPA
CHL1
No protein atoms detected in input pdb file.
ERROR - No supported lipids found in pdb file.
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Received on Tue May 08 2012 - 03:00:05 PDT
