thank you very much for your kind reply.
it works fine now after I add with periodic box.
On 05/07/2012 01:52 PM, Daniel Roe wrote:
> This looks like it might be a trajectory type mismatch to me. If your
> trajectory does not have box information, make sure you are loading
> the trajectory as 'AMBER Coordinates'. If the trajectory does have box
> info, use 'AMBER Coordinates with Periodic Box'.
>
> -Dan
>
> On Mon, May 7, 2012 at 2:22 AM, Albert<mailmd2011.gmail.com> wrote:
>> hello:
>>
>> I've finished 20 ns MD simulation with Amber PMEMD.CUDA.MPI program.
>> However I found the structure looks messy when I load it into VMD:
>>
>> new molecule--> test.prmtop
>>
>> then I load md.mdcrd
>>
>> enclosed this email, you can find a screenshot of it.
>>
>> thank you very much
>>
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Received on Mon May 07 2012 - 07:00:03 PDT
