Date: Mon, 07 May 2012 08:22:41 +0200
hello:
I've finished 20 ns MD simulation with Amber PMEMD.CUDA.MPI program.
However I found the structure looks messy when I load it into VMD:
new molecule--> test.prmtop
then I load md.mdcrd
enclosed this email, you can find a screenshot of it.
thank you very much
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