Dear David Case,
For the configure's output, the content is as following :
Obtaining the gnu suite version:
gcc -v
The version is
Testing the gcc compiler:
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp
testp.c
OK
Testing the gfortran compiler:
gfortran -O0 -o testp testp.f
OK
Testing mixed C/Fortran compilation:
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o te
stp.c.o testp.c
gfortran -O0 -c -o testp.f.o testp.f
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp
testp.c.o testp.f.o -lgfortran -w
OK
Testing pointer size:
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o test_
pointer_size test_pointer_size.c
Detected 64 bit operating system.
Testing flex: OK
Configuring NetCDF (may be time-consuming)...
NetCDF configure succeeded.
Checking for zlib: OK
Checking for libbz2: OK
Configuring fftw-3.3 (may be time-consuming)...
fftw-3.3 configure succeeded.
Configuring XBLAS (may be time-consuming)...
XBLAS configure succeeded.
Configuring MTK++ (may be time-consuming)...
MTK++-0.2.0 configure succeeded.
The configuration file, config.h, was successfully created.
The next step is to type 'make install'
It is weird that no in formation for gcc -v, however, in the command
line, if I type gcc -v or gfortran --v, I can get the same information and
the gcc version is 4.1.2 20080704 (Red Hat 4.1.2-46). I guess some
problem is related to gcc. Up to now, I choose -nofftw3 option for the
configure step.
Best regards
Shulin
On Thu, Apr 26, 2012 at 10:30 AM, case <case.biomaps.rutgers.edu> wrote:
> On Thu, Apr 26, 2012, Shulin Zhuang wrote:
> >
> > Following your suggestions ,I got the same information using gcc -v and
> > gfortran --v :
> >
> > gcc version 4.1.2 20080704 (Red Hat 4.1.2-46)
>
> OK...this compiler version cannot be used to compile fftw3. As Jason said,
> the configure script should have told you that. Very near the top of
> configure's output there are lines like this:
>
> Obtaining the gnu suite version:
> gcc -v
> The version is 4.6.2
>
> What are the corresponding lines on your machine? That will help us figure
> out why the error message is not being triggered. Thanks.
>
> >
> > I re-configured it using the -nofftw3 and can successfully installed the
> > serial and parallel version of amber 12.
>
> This is the best you can do without upgrading to the 4.3 or greater
> versions
> of the gnu compilers.
>
> (Aside to Jason: are those bash-isms at line 711 of configure2?)
>
> ....dac
>
>
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>
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Received on Tue May 01 2012 - 19:00:02 PDT
