adpdb 1A4H_gelda.pdb
Loading PDB file: ./1A4H_gelda.pdb
-- residue 215: duplicate [C] atoms (total 29)
-- residue 215: duplicate [H] atoms (total 40)
-- residue 215: duplicate [N] atoms (total 2)
-- residue 215: duplicate [O] atoms (total 9)

   Warning: Atom names in each residue should be unique.
     (Same-name atoms are handled by using the first
      occurrence and by ignoring the rest.
      Frequently duplicate atom names stem from alternate
      conformations in the PDB file.)

Created a new atom named: H within residue: .R<NMET 1>
  Added missing heavy atom: .R<THR 22>.A<CB 5>
  Added missing heavy atom: .R<THR 22>.A<CG2 7>
  Added missing heavy atom: .R<THR 22>.A<OG1 11>
Created a new atom named: HD1 within residue: .R<HIE 197>
  Added missing heavy atom: .R<CGLU 214>.A<OXT 16>
  Added missing heavy atom: .R<GDM 215>.A<C1 14>
  Added missing heavy atom: .R<GDM 215>.A<C2 12>
  Added missing heavy atom: .R<GDM 215>.A<C21 15>
  Added missing heavy atom: .R<GDM 215>.A<C3 10>
  Added missing heavy atom: .R<GDM 215>.A<C4 8>
  Added missing heavy atom: .R<GDM 215>.A<C5 6>
  Added missing heavy atom: .R<GDM 215>.A<O1 5>
  Added missing heavy atom: .R<GDM 215>.A<C6 73>
  Added missing heavy atom: .R<GDM 215>.A<C22 1>
  Added missing heavy atom: .R<GDM 215>.A<C7 68>
  Added missing heavy atom: .R<GDM 215>.A<O2 75>
  Added missing heavy atom: .R<GDM 215>.A<C8 66>
  Added missing heavy atom: .R<GDM 215>.A<C24 69>
  Added missing heavy atom: .R<GDM 215>.A<C23 76>
  Added missing heavy atom: .R<GDM 215>.A<C9 60>
  Added missing heavy atom: .R<GDM 215>.A<N1 77>
  Added missing heavy atom: .R<GDM 215>.A<O3 80>
  Added missing heavy atom: .R<GDM 215>.A<C10 56>
  Added missing heavy atom: .R<GDM 215>.A<C25 61>
  Added missing heavy atom: .R<GDM 215>.A<C11 49>
  Added missing heavy atom: .R<GDM 215>.A<O4 57>
  Added missing heavy atom: .R<GDM 215>.A<C12 46>
  Added missing heavy atom: .R<GDM 215>.A<O5 50>
  Added missing heavy atom: .R<GDM 215>.A<C13 40>
  Added missing heavy atom: .R<GDM 215>.A<C26 51>
  Added missing heavy atom: .R<GDM 215>.A<C14 37>
  Added missing heavy atom: .R<GDM 215>.A<C27 41>
  Added missing heavy atom: .R<GDM 215>.A<C15 36>
  Added missing heavy atom: .R<GDM 215>.A<C20 24>
  Added missing heavy atom: .R<GDM 215>.A<C16 30>
  Added missing heavy atom: .R<GDM 215>.A<C19 23>
  Added missing heavy atom: .R<GDM 215>.A<O8 25>
  Added missing heavy atom: .R<GDM 215>.A<C17 28>
  Added missing heavy atom: .R<GDM 215>.A<O6 31>
  Added missing heavy atom: .R<GDM 215>.A<C18 26>
  Added missing heavy atom: .R<GDM 215>.A<O7 29>
  Added missing heavy atom: .R<GDM 215>.A<C28 32>
  total atoms in file: 2154
  Leap added 1432 missing atoms according to residue templates:
       41 Heavy
       1391 H / lone pairs
  The file contained 2 atoms not in residue templates