Amber Archive Apr 2012 by thread
- [AMBER] How to set VMD_PLUGIN_PATH ? (in order to analysis mdcrd by GROMACS directly) Catein Catherine (Sat Mar 31 2012 - 21:11:32 PDT)
- [AMBER] Can anyone point out whether my ambertools and amber test failures are significant Acoot Brett (Sun Apr 01 2012 - 04:17:39 PDT)
- Re: [AMBER] rfree: Error decoding variable 1 3 from: Elisa Frezza (Sun Apr 01 2012 - 09:53:03 PDT)
- Re: [AMBER] test failure in the AMBERTOOL installation Ben Roberts (Sun Apr 01 2012 - 14:01:17 PDT)
- [AMBER] debug energy into individual atoms Jorgen Simonsen (Sun Apr 01 2012 - 14:16:39 PDT)
- [AMBER] generating non-standard residue ashwini gupta (Sun Apr 01 2012 - 22:22:32 PDT)
- [AMBER] error in making prmtop & inpcrd for ligand-protein complex Aditya Setiajid (Sun Apr 01 2012 - 23:33:08 PDT)
- Re: [AMBER] Problem in Amber installation setyanto md (Mon Apr 02 2012 - 01:11:55 PDT)
- Re: [AMBER] Asking About Differences between amber force field ff10 and ff03 setyanto md (Mon Apr 02 2012 - 01:30:42 PDT)
- [AMBER] MM-PBSA Question Hoshin Kim (Mon Apr 02 2012 - 02:08:47 PDT)
- [AMBER] Error: unspecified launch failure launching kernel kReduceForces Giovanni Pavan (Mon Apr 02 2012 - 03:34:00 PDT)
- [AMBER] AmberTools-1.5 installation problems Genzo Tanaka (Mon Apr 02 2012 - 04:16:51 PDT)
- [AMBER] Exporting and Boxing Amber Trajectories by Frame Adam Jion (Mon Apr 02 2012 - 04:38:48 PDT)
- Re: [AMBER] ptraj removes my ligands denilson.dqi.ufla.br (Mon Apr 02 2012 - 06:55:33 PDT)
- [AMBER] Use of PCASuite in analyzing DNA-MD trajectories Muhammad Khaled Tumbi (Mon Apr 02 2012 - 11:53:17 PDT)
- [AMBER] metal site Per Jr. Greisen (Mon Apr 02 2012 - 13:09:25 PDT)
- [AMBER] Setting the cut-off and size of box Pengzhi (Mon Apr 02 2012 - 16:29:00 PDT)
- [AMBER] Amber GPU test fails Mohammad Ashraf Bhuiyan (Mon Apr 02 2012 - 17:44:07 PDT)
- [AMBER] "Possible Failures" in Amber 11 and Amber tools tests Dureid El-Moghraby (Tue Apr 03 2012 - 03:27:49 PDT)
- [AMBER] Inconsistent Internal energy from monomer to dimer Josep Maria Campanera Alsina (Tue Apr 03 2012 - 04:15:55 PDT)
- Re: [AMBER] Large Energy Jump in TMD simulation - Regarding Carlos Simmerling (Tue Apr 03 2012 - 08:21:07 PDT)
- [AMBER] RE GPU test fails Mohammad Ashraf Bhuiyan (Tue Apr 03 2012 - 10:39:57 PDT)
- Re: [AMBER] GPU test fails Mohammad Ashraf Bhuiyan (Tue Apr 03 2012 - 12:49:43 PDT)
- [AMBER] error with chamber Albert (Tue Apr 03 2012 - 13:15:22 PDT)
- Re: [AMBER] Particles moving outside of simulation box for pmemd.cuda.mpi Ross Walker (Tue Apr 03 2012 - 16:14:19 PDT)
- [AMBER] distance dependent dielectric constant kanika sharma (Wed Apr 04 2012 - 05:42:17 PDT)
- [AMBER] Announcement: release of Amber12 and AmberTools12 David A Case (Wed Apr 04 2012 - 07:09:32 PDT)
- [AMBER] close PME in AMBER 10 Qian Wang (Wed Apr 04 2012 - 10:17:08 PDT)
- [AMBER] AMBERHOME is not recognized by ./configure Genzo Tanaka (Wed Apr 04 2012 - 15:15:12 PDT)
- [AMBER] Fwd: error in making prmtop & inpcrd for ligand-protein complex Muhammad Aditya Setiajid (Wed Apr 04 2012 - 20:39:11 PDT)
- [AMBER] ion parameters in simulations with nucleic acids Vlad Cojocaru (Thu Apr 05 2012 - 04:54:12 PDT)
- [AMBER] using both the ILDN and NMR-based modifications of ff99SB Vlad Cojocaru (Thu Apr 05 2012 - 05:42:38 PDT)
- [AMBER] Odd coordinate writing problem in pmemd.MPI steinbrt.rci.rutgers.edu (Thu Apr 05 2012 - 05:49:40 PDT)
- [AMBER] how to add a electric field? Xianwei Wang (Thu Apr 05 2012 - 05:59:19 PDT)
- [AMBER] Fwd: Problem? krati sharma (Fri Apr 06 2012 - 02:58:43 PDT)
- [AMBER] Further question on protonation state of histidine Acoot Brett (Fri Apr 06 2012 - 04:25:04 PDT)
- [AMBER] What is major difference between Amber11 and Amber12 K. Uebayashi (Fri Apr 06 2012 - 07:06:48 PDT)
- [AMBER] binding energy calculations kirtana S (Fri Apr 06 2012 - 10:41:53 PDT)
- [AMBER] How can I fix two ends of DNA? mehdi bagherpoor (Sun Apr 08 2012 - 03:20:42 PDT)
- [AMBER] Ligand and receptor separated when setting iwrap=1 Liu Denis (Sun Apr 08 2012 - 07:39:10 PDT)
- [AMBER] GB and Dielectric constant kanika sharma (Mon Apr 09 2012 - 04:49:29 PDT)
- [AMBER] query regarding gaussian and antechamber jun kit (Mon Apr 09 2012 - 08:57:32 PDT)
- [AMBER] GB/SA Aron Broom (Mon Apr 09 2012 - 09:15:55 PDT)
- [AMBER] crystallographic artifacts ashwini gupta (Mon Apr 09 2012 - 23:33:54 PDT)
- [AMBER] PBC Fernando Martín García (Tue Apr 10 2012 - 03:40:51 PDT)
- [AMBER] is there any tutorial for membrane protein simulations for Amber 12? Albert (Tue Apr 10 2012 - 05:52:25 PDT)
- [AMBER] Units of the output file. Arthur Roberts (Tue Apr 10 2012 - 05:54:54 PDT)
- [AMBER] Could not read velocities from restart file David Condon (Tue Apr 10 2012 - 06:13:57 PDT)
- [AMBER] 2FE-2S cluster proteins topology and parameters files Angelo Gallo CERM (Tue Apr 10 2012 - 09:49:46 PDT)
- [AMBER] Calculating B-factor in ptraj mish (Tue Apr 10 2012 - 10:55:28 PDT)
- [AMBER] Residue mismatch - Amber11 sławek bojarowski (Tue Apr 10 2012 - 14:47:18 PDT)
- [AMBER] SOM clustering Anselm Horn (Wed Apr 11 2012 - 00:51:24 PDT)
- [AMBER] how does frcmod work specifially. rdparm Knips, Alexander (Wed Apr 11 2012 - 05:05:42 PDT)
- [AMBER] nmode list index out of range manikanthan bhavaraju (Wed Apr 11 2012 - 06:34:46 PDT)
- [AMBER] Fwd: no info contained in Residues to print section - MMPBSA.py Alfredo Quevedo (Wed Apr 11 2012 - 07:03:01 PDT)
- [AMBER] Error: Could not parse GB output files! Check for missing values (*********). zhangaidi (Wed Apr 11 2012 - 07:24:50 PDT)
- [AMBER] Error: Could not parse GB output files! Check for missing values (*********). zhangaidi (Wed Apr 11 2012 - 07:35:40 PDT)
- Re: [AMBER] parameters for Lys-sugar P2N file Urszula Uciechowska (Wed Apr 11 2012 - 09:33:52 PDT)
- [AMBER] about sander and pmemd bmartini (Wed Apr 11 2012 - 10:03:15 PDT)
- Re: [AMBER] AMBER Digest, Vol 121, Issue 2 Alfredo Quevedo (Wed Apr 11 2012 - 12:33:10 PDT)
- [AMBER] MMPBSA error Kumar, Sonu (Wed Apr 11 2012 - 14:24:47 PDT)
- [AMBER] parameters for Lys-sugar P2N file Urszula Uciechowska (Thu Apr 12 2012 - 01:48:53 PDT)
- [AMBER] Query regarding Amber 11 Somnath Nandy (Thu Apr 12 2012 - 05:39:42 PDT)
- [AMBER] Query regarding Amber Installation Somnath Nandy (Thu Apr 12 2012 - 06:02:53 PDT)
- [AMBER] MMPBSA.py.MPI calls sander instead of sander.MPI Alfredo Quevedo (Thu Apr 12 2012 - 06:12:01 PDT)
- [AMBER] Fwd: [q4md-fft] Re: parameters for Lys-sugar P2N file FyD (Thu Apr 12 2012 - 07:44:15 PDT)
- [AMBER] how to use Amber99SB-ILDN in Amber11? Albert (Thu Apr 12 2012 - 11:28:57 PDT)
- [AMBER] closest command Qiong Zhang (Thu Apr 12 2012 - 14:30:55 PDT)
- [AMBER] MMPBSA error in segmentation fault Aditya Setiajid (Fri Apr 13 2012 - 01:05:16 PDT)
- [AMBER] pcacovar in ptraj Bala Subramani (Fri Apr 13 2012 - 04:15:08 PDT)
- [AMBER] Electrostatic potential calculation Sudarshan Debnath (Fri Apr 13 2012 - 07:17:04 PDT)
- [AMBER] installing Amber12 in parallel Marc van der Kamp (Fri Apr 13 2012 - 07:39:42 PDT)
- [AMBER] Can MMPBSA calculate the binding energy in organic solvent? Liu Denis (Fri Apr 13 2012 - 08:20:33 PDT)
- [AMBER] Error compiling pmemd.cuda.MPI Alfredo Quevedo (Fri Apr 13 2012 - 08:51:17 PDT)
- [AMBER] reduce and trim function Mahendra B Thapa (Fri Apr 13 2012 - 09:17:32 PDT)
- [AMBER] Electrostatic potential calculation Sudarshan Debnath (Fri Apr 13 2012 - 09:50:53 PDT)
- [AMBER] how to restrain the ligand in minimization and NVT equilibration step? Albert (Fri Apr 13 2012 - 10:17:39 PDT)
- [AMBER] Error loading Glycam_06 parameters in xLEaP / tleap Kepa K. Burusco (Fri Apr 13 2012 - 10:25:59 PDT)
- [AMBER] is it possible strip off restrain linearly? Albert (Fri Apr 13 2012 - 11:28:20 PDT)
- [AMBER] NVT error Albert (Fri Apr 13 2012 - 11:45:04 PDT)
- [AMBER] Problem with mdnab: ERROR in RATTLE Andrey (Fri Apr 13 2012 - 12:57:19 PDT)
- [AMBER] Problem with MCPB moitrayee.mbu.iisc.ernet.in (Fri Apr 13 2012 - 15:33:37 PDT)
- [AMBER] saveamberparm in xleap does not recognize atom type F Genzo Tanaka (Fri Apr 13 2012 - 16:01:36 PDT)
- [AMBER] : wrong charge calculation by xleap Sharma, Purshotam (Fri Apr 13 2012 - 17:52:02 PDT)
- [AMBER] restrain syntax Albert (Fri Apr 13 2012 - 21:42:41 PDT)
- [AMBER] Electrostatic potential calculation Sudarshan Debnath (Fri Apr 13 2012 - 21:43:31 PDT)
- [AMBER] strange output information Albert (Fri Apr 13 2012 - 23:18:13 PDT)
- [AMBER] what's the amber efficiency? Albert (Sat Apr 14 2012 - 04:45:57 PDT)
- Re: [AMBER] [amber] error: could not parse gb output files! check for missing values (*********). zhangaidi (Sat Apr 14 2012 - 04:57:24 PDT)
- [AMBER] Electrostatic potential calculation Sudarshan Debnath (Sat Apr 14 2012 - 06:03:52 PDT)
- [AMBER] Amber12 compile with "intel" err. javacfish (Sat Apr 14 2012 - 07:48:05 PDT)
- [AMBER] Problem with gaussian input file generation moitrayee.mbu.iisc.ernet.in (Sat Apr 14 2012 - 13:27:17 PDT)
- [AMBER] abertools12 installation failure Francesco Pietra (Sun Apr 15 2012 - 00:53:03 PDT)
- Re: [AMBER] FW: reduce and trim function Mahendra B Thapa (Sun Apr 15 2012 - 14:49:49 PDT)
- [AMBER] Partitioning issue of sander 板垣哲彦 (Sun Apr 15 2012 - 19:00:14 PDT)
- [AMBER] parallelization of paramfit in ambertools12 Francesco Pietra (Mon Apr 16 2012 - 00:47:16 PDT)
- [AMBER] error installing Amber12-gpu version Vijay Manickam Achari (Mon Apr 16 2012 - 01:25:09 PDT)
- [AMBER] AMBER USER José Guilherme Vilhena Albuquerque d'Orey (Mon Apr 16 2012 - 03:03:00 PDT)
- [AMBER] MICA SURFACE José Guilherme Vilhena Albuquerque d'Orey (Mon Apr 16 2012 - 03:04:25 PDT)
- [AMBER] when will the membrane protein simulation tutorial be available? Albert (Mon Apr 16 2012 - 06:05:39 PDT)
- [AMBER] Good cluster configuration for running PMEMD.MPI? Juan Carlos Muñoz García (Mon Apr 16 2012 - 06:19:56 PDT)
- [AMBER] Electrostatic potential calculation Sudarshan Debnath (Mon Apr 16 2012 - 06:47:57 PDT)
- [AMBER] problem with "make test.parallel" for AMBER12 Marc van der Kamp (Mon Apr 16 2012 - 07:15:21 PDT)
- [AMBER] Error while running mm_pbsa.pl Prashant Kumar (Mon Apr 16 2012 - 08:30:14 PDT)
- [AMBER] AMBER12 QM/MM: is d-orbital code going to be parallelized? Marc van der Kamp (Mon Apr 16 2012 - 08:57:39 PDT)
- [AMBER] Need help with MMPBSA.MPI Victor Ma (Mon Apr 16 2012 - 09:12:31 PDT)
- [AMBER] forcefield modifications Knips, Alexander (Mon Apr 16 2012 - 09:23:25 PDT)
- [AMBER] problem converting AmbertoDesmond Albert (Mon Apr 16 2012 - 11:54:11 PDT)
- [AMBER] "closest" command in cpptraj Alfredo Quevedo (Mon Apr 16 2012 - 12:57:11 PDT)
- [AMBER] AmberTools12 Installation Error Senthil Natesan (Mon Apr 16 2012 - 12:59:20 PDT)
- [AMBER] sander error during GB calculations Qiong Zhang (Mon Apr 16 2012 - 19:09:28 PDT)
- [AMBER] Creating input file for Protein-protein simulation Tommy Yap (Tue Apr 17 2012 - 00:51:41 PDT)
- Re: [AMBER] :Re: "closest" command in cpptraj Alfredo Quevedo (Tue Apr 17 2012 - 05:44:20 PDT)
- [AMBER] P2N file error from RED Urszula Uciechowska (Tue Apr 17 2012 - 05:59:11 PDT)
- [AMBER] Using Antechamber to generate RESP prepi file Lianhu Wei (Tue Apr 17 2012 - 14:12:29 PDT)
- [AMBER] Why RMSD goes fast to 5 angstrom? Shulin Zhuang (Tue Apr 17 2012 - 19:26:20 PDT)
- [AMBER] About restraint Jun Wang (Tue Apr 17 2012 - 19:33:09 PDT)
- [AMBER] Fwd: Why RMSD goes fast to 5 angstrom? Shulin Zhuang (Tue Apr 17 2012 - 20:14:04 PDT)
- [AMBER] how to improve GPU running? Albert (Tue Apr 17 2012 - 23:24:54 PDT)
- [AMBER] problem installing AmberTools 12 on Mac OS X Lion Sidney Elmer (Wed Apr 18 2012 - 01:11:01 PDT)
- [AMBER] Use effective core potential in amber QM/MM calculation with Gaussian Tong Zhu (Wed Apr 18 2012 - 02:46:43 PDT)
- [AMBER] Dielectric constant and scaled charges Lorenzo Gontrani (Wed Apr 18 2012 - 03:34:09 PDT)
- Re: [AMBER] About Restraint Jun Wang (Wed Apr 18 2012 - 07:48:14 PDT)
- [AMBER] SCEE and SCNB GLYCAM_06 values with amber11 top crd files Kepa K. Burusco (Wed Apr 18 2012 - 10:55:09 PDT)
- [AMBER] Amber11: running ptraj bmartini (Wed Apr 18 2012 - 11:26:38 PDT)
- [AMBER] why no periodic information? Albert (Wed Apr 18 2012 - 12:16:04 PDT)
- [AMBER] problem in tleap with head and tail atom assignment Cramariuc Oana (Wed Apr 18 2012 - 13:10:34 PDT)
- [AMBER] NUCGEN and FORCE Field disfunction VladanStefanovic.kg.ac.rs (Thu Apr 19 2012 - 03:00:16 PDT)
- [AMBER] How can I exert external force in the end of DNA? mehdi bagherpoor (Thu Apr 19 2012 - 07:13:01 PDT)
- [AMBER] xleap pdb file loading problem. DoYong Kim (Thu Apr 19 2012 - 08:53:10 PDT)
- [AMBER] cpptraj, ptraj and time interval Fabrício Bracht (Thu Apr 19 2012 - 10:15:07 PDT)
- [AMBER] About force constant in umbrella sampling Mo Chen (Thu Apr 19 2012 - 10:46:34 PDT)
- [AMBER] Amber 12 - Check for updates failed Shaw, Sharon (Thu Apr 19 2012 - 12:08:26 PDT)
- [AMBER] ★what's new?◆amber◆ ZhaoLei (Thu Apr 19 2012 - 12:12:48 PDT)
- [AMBER] Bug? Antechamber, Ambertools-1.4 Lianhu Wei (Thu Apr 19 2012 - 13:11:46 PDT)
- Re: [AMBER] Old version Thales Kronenberger (Thu Apr 19 2012 - 13:18:36 PDT)
- [AMBER] How to determine the protonation state of phosphorylated residue in a protein? Rajendra Sharma (Thu Apr 19 2012 - 17:08:00 PDT)
- [AMBER] The error of installing mpi4py in ambertools12 for MMPBSA parallel JiYuan Liu (Fri Apr 20 2012 - 21:13:02 PDT)
- [AMBER] Some problem with building Non-standard residue Nicholus Bhattacharjee (Thu Apr 19 2012 - 23:14:30 PDT)
- [AMBER] QM/MM and water box type Fernando Martín García (Fri Apr 20 2012 - 01:07:26 PDT)
- [AMBER] Confusion in adding TER cards Asmita Gupta (Fri Apr 20 2012 - 04:05:24 PDT)
- [AMBER] MM/PBSA calculations mish (Fri Apr 20 2012 - 05:06:28 PDT)
- [AMBER] imin = 5, expected numerical error when re-calculating energy Brian Radak (Fri Apr 20 2012 - 07:46:13 PDT)
- [AMBER] (GPU) preformance of amber 12 István Lőrincz (Fri Apr 20 2012 - 08:33:37 PDT)
- [AMBER] error Building proper torsion parameters. zhangaidi (Fri Apr 20 2012 - 10:52:29 PDT)
- [AMBER] external force in the end of DNA strands mehdi bagherpoor (Fri Apr 20 2012 - 16:15:44 PDT)
- [AMBER] using two GPUs Vijay Manickam Achari (Fri Apr 20 2012 - 17:39:33 PDT)
- [AMBER] is membrane protein simulation tutorial ready? Albert (Sat Apr 21 2012 - 12:14:22 PDT)
- [AMBER] Installation problem for Ambertools 12 on Mac OS X Lion Richard Lonsdale (Sun Apr 22 2012 - 00:26:46 PDT)
- [AMBER] Where can I find silhouette.pl? Irene Newhouse (Sun Apr 22 2012 - 01:54:05 PDT)
- [AMBER] amber 10 nmode error. xmzpzengs (Mon Apr 23 2012 - 01:26:04 PDT)
- [AMBER] error in AMBER while generatting prmtop and ipcrd kureeckal ramesh (Mon Apr 23 2012 - 01:56:11 PDT)
- [AMBER] H-Bonding and Amber's Shake algorithm Adam Jion (Mon Apr 23 2012 - 03:33:38 PDT)
- Re: [AMBER] parameters for Lys-sugar Urszula Uciechowska (Mon Apr 23 2012 - 03:38:24 PDT)
- [AMBER] RMSD analysis for cyclo-tetra-peptide mcj452500 (Mon Apr 23 2012 - 04:08:42 PDT)
- Re: [AMBER] [amber] error building proper torsion parameters. 本人 (Mon Apr 23 2012 - 08:02:37 PDT)
- [AMBER] Problems with atom type in sidechain.bcl Fabrício Bracht (Mon Apr 23 2012 - 08:21:42 PDT)
- [AMBER] Huge discrepancy in el part of "solvation energy" using Thermodynamic Integration Marek Maly (Mon Apr 23 2012 - 09:55:26 PDT)
- [AMBER] AMBER12 build on Linux x86_64 Shaw, Sharon (Mon Apr 23 2012 - 11:41:36 PDT)
- [AMBER] AMBER 11 sander segmentation fault Shuyi Cao (Mon Apr 23 2012 - 16:32:21 PDT)
- Re: [AMBER] Amber using Gaussian input ashley chen (Mon Apr 23 2012 - 23:51:45 PDT)
- [AMBER] Amber 12 Installation errors relevant to fftw3 Shulin Zhuang (Tue Apr 24 2012 - 02:15:05 PDT)
- [AMBER] Entropy: nmode and quasi-harmonic approximation George Tzotzos (Tue Apr 24 2012 - 02:24:15 PDT)
- [AMBER] error in parallel amber 11 installation Asmita Gupta (Tue Apr 24 2012 - 02:43:06 PDT)
- [AMBER] Protein nanoparticle interaction Navin Jain (Tue Apr 24 2012 - 02:56:55 PDT)
- [AMBER] AM1 scalability Jacopo Sgrignani (Tue Apr 24 2012 - 08:12:00 PDT)
- [AMBER] For atom: .R<Na+ 127>.A<Na+ 1> Could not find type: Na+ George Tzotzos (Tue Apr 24 2012 - 10:59:01 PDT)
- [AMBER] Trouble installing AmberTools 1.5 on mac Andrew Ritchie (Tue Apr 24 2012 - 11:05:33 PDT)
- [AMBER] AMBER12 installation error Peter Fojan (Wed Apr 25 2012 - 01:29:13 PDT)
- [AMBER] add_pdb colvin (Wed Apr 25 2012 - 02:12:21 PDT)
- [AMBER] ff12SB with Na+ ion Tong Zhu (Wed Apr 25 2012 - 03:56:33 PDT)
- [AMBER] QM/MM simulation ashwini gupta (Wed Apr 25 2012 - 05:19:36 PDT)
- [AMBER] is it possible to convert gromacs MD system into Amber? Albert (Wed Apr 25 2012 - 06:13:50 PDT)
- [AMBER] Angle restrained minimization Ashutosh Shandilya (Wed Apr 25 2012 - 06:39:52 PDT)
- [AMBER] computational scanning Hector A. Baldoni (Wed Apr 25 2012 - 08:06:57 PDT)
- [AMBER] Lmode_in_Amber11 JAIME RUBIO MARTINEZ (Wed Apr 25 2012 - 11:08:18 PDT)
- [AMBER] 1-4 EEL meaning Camille Sultana (Wed Apr 25 2012 - 11:21:08 PDT)
- [AMBER] the real binding free energy bmartini (Wed Apr 25 2012 - 19:34:21 PDT)
- [AMBER] problems installing pmedm.cuda Peter Fojan (Thu Apr 26 2012 - 00:39:35 PDT)
- Re: [AMBER] parameters for Lys-sugar leap errors Urszula Uciechowska (Thu Apr 26 2012 - 02:41:01 PDT)
- [AMBER] creating a box of fixed size Bala subramanian (Thu Apr 26 2012 - 02:44:55 PDT)
- [AMBER] sander and pmemd xiaojiong (Thu Apr 26 2012 - 04:56:18 PDT)
- [AMBER] "Spiderweb" jun kit (Thu Apr 26 2012 - 06:52:19 PDT)
- [AMBER] is lipid 11 FF compatible with GAFF? Albert (Thu Apr 26 2012 - 09:21:34 PDT)
- [AMBER] Radii in prmtop Jesper Sørensen (Thu Apr 26 2012 - 09:51:48 PDT)
- [AMBER] GTP parameter set for RNA luca codutti (Thu Apr 26 2012 - 11:28:31 PDT)
- [AMBER] GLYCAM 06h and 06EPb Lachele Foley (Lists) (Thu Apr 26 2012 - 11:38:39 PDT)
- [AMBER] Creating a concatenated coordinate file for LES Sajeewa Pemasinghe (Thu Apr 26 2012 - 14:38:15 PDT)
- [AMBER] Creating a concatenated coordinate file for LES Sajeewa Pemasinghe (Thu Apr 26 2012 - 19:01:22 PDT)
- [AMBER] Angle restraints Komal Soni (Fri Apr 27 2012 - 06:14:15 PDT)
- [AMBER] Problem with molegro file Chris Chris (Fri Apr 27 2012 - 09:52:31 PDT)
- [AMBER] IBM compiler for Amber12? Albert (Fri Apr 27 2012 - 10:02:13 PDT)
- [AMBER] amber 12 with intel compiler failed Albert (Fri Apr 27 2012 - 12:34:49 PDT)
- [AMBER] water cap simulation Yi An (Fri Apr 27 2012 - 14:08:03 PDT)
- [AMBER] Electrostatic potential calculation Sudarshan Debnath (Sat Apr 28 2012 - 05:13:08 PDT)
- [AMBER] preparation of silver metal parameter file Navin Jain (Sat Apr 28 2012 - 06:05:40 PDT)
- [AMBER] Problems with atom type in sidechain.bcl Fabrício Bracht (Sat Apr 28 2012 - 08:03:21 PDT)
- Re: [AMBER] mbondi3 Mike NG (Sat Apr 28 2012 - 11:07:07 PDT)
- [AMBER] multiple GPU compile failed for Amber12 Albert (Sat Apr 28 2012 - 11:13:44 PDT)
- [AMBER] calculation parallel xiaojiong (Sat Apr 28 2012 - 17:59:56 PDT)
- [AMBER] the problem of charge xiaojiong (Sat Apr 28 2012 - 18:03:08 PDT)
- [AMBER] testing amber12 fails Vijay Manickam Achari (Sun Apr 29 2012 - 01:17:47 PDT)
- [AMBER] how can apply external force to DNA residues? mehdi bagherpoor (Sun Apr 29 2012 - 01:51:16 PDT)
- [AMBER] is there a second methods to use CHARMM FF in amber? Albert (Sun Apr 29 2012 - 22:42:35 PDT)
- [AMBER] MPI with options "-ip" and "-axSTPW" kurisaki (Mon Apr 30 2012 - 02:33:37 PDT)
- [AMBER] RAMD simulations Agostino Bruno (Mon Apr 30 2012 - 06:54:18 PDT)
- [AMBER] input format for qms Genzo Tanaka (Mon Apr 30 2012 - 09:16:36 PDT)
- [AMBER] error in decomposition analysis using ambertools 1.5 manikanthan bhavaraju (Mon Apr 30 2012 - 14:25:30 PDT)
- Re: [AMBER] FW: FW: reduce and trim function Mahendra B Thapa (Mon Apr 30 2012 - 15:17:58 PDT)
- [AMBER] getting metal ions coordinates of nmr structures of a protein Mahendra B Thapa (Mon Apr 30 2012 - 16:11:36 PDT)
- Last message date: Mon Apr 30 2012 - 21:00:02 PDT
- Archived on: Mon Dec 23 2024 - 05:54:28 PST
