Dear amber users
I'm studying free energy (TI). I have a pdb file containing protein and
dna. I want to mutate base piar GC to AT in dna to create new pdb file with
mutated base pair.
Since all atoms, except the ones in scmasks must be identical in their
starting positions and order in the prmtop, I must do mutation by leap. How
to do mutation by leap. I couldn't find tutorial about my case.
Please help me about that.
Any help will highly appreciated.
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Received on Tue Feb 21 2012 - 02:30:02 PST
