Date: Mon, 20 Feb 2012 04:04:32 -0600
I am trying to run the Antechamber tutorial with Sustiva, and my antechamber installation seems to be faulty. When I enter "antechamber-I sustiva_new.pdb -fi pdb -o sustiva.mol2 -fo mol2 -c bcc -s 2 as the tutorial directs, instead of getting the following response:
Running .................
Total number of electrons: 160; net charge: 0
Running: /usr/local/amber11/bin/mopac.sh
Running: /usr/local/amber11/bin/am1bcc -I ANTECHAMBER_AM1BCC_PRE.AC........etc.
I get the following:
Running: /usr/local/amber11//bin/sqm -O -I sqm.in -o sqm.out
And, I don't see any of the ANTECHAMBER_AC....., ANTECHAMBER_AM1BCC.AC, ANTECHAMBER_BOND_TYPE.AC, etc files being written to my directory.
The tutorial was run on Amber 10. I have Amber 11. Did something change between these two releases?
John
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
(image/jpeg attachment: image001.jpg)
