Dear amber users
I know for simulation with solvent, I should use following step:
1) $AMBERHOME/exe/tleap -s -f $AMBERHOME/dat/leap/cmd/leaprc.ff03
2) dna = loadpdb "dna.pdb"
3) addions dna Na+ 0
4) solvatebox dna TIP3PBOX 8.0 iso
If I want to do md simulation of dna without solvent, what command
should I use instead of step 4
such as dna (solute) is set in cubic box.
Any help will highly appreciated.
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Received on Tue Feb 14 2012 - 00:30:02 PST
