Re: [AMBER] per-residue RMSF without B-factor, what is the unit of these values, could be as large as 5000?

From: Jason Swails <jason.swails.gmail.com>
Date: Wed, 8 Feb 2012 00:27:04 -0500

Did you do an RMS fit (along with centering and imaging) first? That could give rise to very large fluctuations (although 5000 still seems too large to me)

The units are angstroms, I'm pretty sure (that's the Amber standard).

All the best,
Jason

--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
On Feb 7, 2012, at 2:48 AM, Catein Catherine <askamber23.hotmail.com> wrote:
> 
> Dear Sir/Madam,
> I did RMSF analysis for per-residue in a protein WITHOUT using B-factor.  The values could be as large as 5000.
> What is the unit of the RMSF without B-factor?
> Best regards,
> Catherine                         
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Received on Tue Feb 07 2012 - 21:30:03 PST