Dear Dr. Francois,
Thank you for kind advice.
I will check the information.
Yours sincerely,
Ikuo Kurisaki
-----Original Message-----
From: FyD [mailto:fyd.q4md-forcefieldtools.org]
Sent: Monday, February 06, 2012 4:27 AM
To: AMBER Mailing List
Subject: Re: [AMBER] GL4 at C-terminal
Dear Ikuo Kurisaki,
_If_ you need new terminal residues, see:
http://q4md-forcefieldtools.org/Tutorial/Tutorial-3.php#16
http://q4md-forcefieldtools.org/Tutorial/Tutorial-3.php#17
and
http://q4md-forcefieldtools.org/Tutorial/Tutorial-3.php#24
vs
http://q4md-forcefieldtools.org/Tutorial/Tutorial-3.php#25
regards, Francois
> I would like to ask a question about the setting of constant pH MD.
>
> In preparing topology files, I found that constph.lib does not contain
>
> N- and C-terminal positioned Residue type for GL4 and AS4 as is usual
> residues.
>
> Is there some prepfiles anywhere, or we need to built it?
>
> My interested protein has Glutamate in the C-terminal, unfortunately.
>
> Thank you for usual support and advices,
>
> Yours sincerely,
> Ikuo Kurisaki
>
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Received on Sun Feb 05 2012 - 17:00:02 PST
