On Wed, Jan 25, 2012, shahab shariati wrote:
>
> I want to solvate my protein into a cubic box.
>
> when I use solvatebox protein TIP3PBOX [ iso ] [ 8.0 ]
>
> solvateBox: Argument #3 is type String must be of type: [list number]
> usage: solvateBox <solute> <solvent> <buffer> [iso] [closeness]
>
> what is suitable case for buffer?
"buffer" gives the minimium distance from the edge of the protein to the edge
of the box. Typical values are in the range of 12-15 Ang.
[Note that you don't acutally type the "[" or "]" characters: they indicate
optional arguments.
...dac
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Received on Wed Jan 25 2012 - 07:00:02 PST
