Dear amber users
I did md simulation of protein as follows:
1) minimization
2) 200 ps equilibration (NPT)
3) 300 ps equilibration (NPT)
4) 1000 ps production run (NPT)
In analysis step, I want to obtain RMSD in all of the simulation time
(200+300+1000 = 1500 ps)
how to do that?
any help will highly appreciated.
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Received on Wed Jan 25 2012 - 03:00:03 PST
