Re: [AMBER] velocities in restart files taken from ptraj

From: Thomas Cheatham <tec3.utah.edu>
Date: Tue, 24 Jan 2012 18:28:51 -0700 (Mountain Standard Time)

> I set up my simulation with the following flags: ioutfm = 1, ntwv = -1,
> with the expectation that I would be able to pull restart files from any of
> the frames saved in the mdcrd file. However, when I output the frames into
> individual restart files using ptraj:

The mdcrd only contains coordinates and does not properly handle the mdvel
(velocity dump) file. You can set NTWR < 0 and it will write out multiple
restart files every N steps if NTWR = -N.

--tec3

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Received on Tue Jan 24 2012 - 17:30:03 PST
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