you should install intel compiler for 64bit system & install again.
On Mon, Jan 23, 2012 at 12:06 AM, case <case.biomaps.rutgers.edu> wrote:
> On Sun, Jan 22, 2012, subrata paul wrote:
> >
> > In The amber10 installation with amberTools1.2 on fedora 14 64 bit
> > there is a error like
> >
> > make[1]: Leaving directory `/home/subrata/AMBER/amber10/src/cifparse'
> > (cd nab && make install )
> > make[1]: Entering directory `/home/subrata/AMBER/amber10/src/nab'
> > ./nab -c -DDATDIR='"/home/subrata/AMBER/amber10/dat"' na_anal.nab
> > na_anal.c: In function helixanal:
> > na_anal.c:2417:16: error: expected ) before is
> > na_anal.c:2417:16: error: stray \ in program
> > na_anal.c:2417:41: warning: missing terminating " character
> > na_anal.c:2417:16: error: missing terminating " character
> > na_anal.c:2419:1: error: expected ; before } token
> > cc failed!
> > make[1]: *** [na_anal.o] Error 1
> > make[1]: Leaving directory `/home/subrata/AMBER/amber10/src/nab'
> > make: *** [install] Error
> >
>
> Plan A:
>
> Try the following change: ("-" shows the lines you have; "+" what it should
> be replaced with. Line numbers may be somewhat off.)
>
> --- a/AmberTools/src/nab/na_anal.nab
> +++ b/AmberTools/src/nab/na_anal.nab
> .. -1572,7 +1572,7 .. int basepairanal( molecule m, int
> PrimaryStrand,
> int
> NotValidAnswer = FALSE;
> }
> else{
> - printf( "\"%s\" is not a valid answer.\n",
> WCAnswer );
> + printf( "%s is not a valid answer.\n", WCAnswer );
> NotValidAnswer = TRUE;
> }
> }
> .. -2185,7 +2185,7 .. int helixanal( molecule in_mol )
> SingleStranded = TRUE;
> }
> else{
> - printf( "\"%s\" is not a valid answer.\n",
> Paral
> + printf( "%s is not a valid answer.\n",
> ParallelA
> NotValidAnswer = TRUE;
> }
> }
>
>
> Plan "B": just skip compilation of NAB in AmberTools 1.2: you may not
> need it at all, or, you can get it from AmberTools 1.5.
>
> ...dac
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Sun Jan 22 2012 - 13:00:02 PST
