Dear Dr. Lachele
Thank you for reply. I simulate a protein-carbohydrate complex. But, as I think, I should at first create a .top and .crd files for protein and carbohydrate individually and then both files for the complex. Please, should I use two force fields (for example, glycam06 and amber.ff99) for protein-carbohydrate complex ?
thank you in advance!
john
> Date: Sun, 15 Jan 2012 14:07:58 -0500
> From: lf.list.gmail.com
> To: amber.ambermd.org
> Subject: Re: [AMBER] Using glycam06 under Amber8
>
> Carbohydrate alone, or carbohydrate and protein?
>
>
> On Sun, Jan 15, 2012 at 1:45 PM, john Kerk <gor63.hotmail.de> wrote:
> >
> > Dear Amber users
> > I am using Amber8 version in my MD simulations but I do not know how can implant glycam06 force field in Amber8 version. Please any suggestions (in detail, if possible) will be helpful.
> > John!
> >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
>
>
> --
> :-) Lachele
> Lachele Foley
> CCRC/UGA
> Athens, GA USA
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Jan 16 2012 - 00:00:02 PST
