Re: [AMBER] PMEMD installation error

From: hari krishna <haricoolguy111.gmail.com>
Date: Tue, 10 Jan 2012 11:00:30 +0530

I am trying to install AMBER 10 version


>What version of Amber are you trying to install?

On Fri, Dec 23, 2011 at 7:41 AM, hari krishna <haricoolguy111.gmail.com>wrote:


*> Dear AMBER users, *
*> *
*> I have successfully installed the parallel version of the SANDER and
then i *
*> tried to install the PMEMD in parallel, but got the following
error<http://archive.ambermd.org/201112/0460.html#>.
*
*> *
*> *
*> ./configure linux_em64t gfortran mpich2 *
*> *
*> the above is the combination I have used. *
*> *
*> *
*> cd src && make all *
*> make[1]: Entering directory `/home/guest1/amber10/src/pmemd/src' *
*> cc -E -DPUBFFT gbl_constants.fpp gbl_constants.f90 *
*> cc: gbl_constants.f90: No such file or directory *
*> # 1 "gbl_constants.fpp" *
*> # 1 "<built-in>" *
*> # 1 "<command line>" *
*> # 1 "gbl_constants.fpp" *
*> *
*> # 1 "copyright.i" 1 *
*> *
*>
!************************************************************************ *
*> ! AMBER ** *
*> ! ** *
*> ! Copyright (c) 2008 ** *
*> ! Regents of the University of California ** *
*> ! All Rights Reserved. ** *
*> ! ** *
*> ! This software provided pursuant to a license agreement containing ** *
*> ! restrictions on its disclosure, duplication, and use. This software **
*
*> ! contains confidential and proprietary information, and may not be ** *
*> ! extracted or distributed, in whole or in part, for any purpose ** *
*> ! whatsoever, without the express written permission of the authors. ** *
*> ! This notice, and the associated author list, must be attached to ** *
*> ! all copies, or extracts, of this software. Any additional ** *
*> ! restrictions set forth in the license agreement also apply to this ** *
*> ! software. ** *
*>
!************************************************************************ *
*> *
*> # 2 "gbl_constants.fpp" 2 *
*> *
*> *
*>
!*******************************************************************************
*
*> ! *
*> ! Module: gbl_constants_mod *
*> ! *
*> ! Description: A central repository of constants that otherwise create *
*> ! circular dependency headaches. *
*> ! *
*> *
*>
!*******************************************************************************
*
*> *
*> module gbl_constants_mod *
*> *
*> implicit none *
*> *
*> ! Global constants: *
*> *
*> double precision, parameter :: PI = 3.1415926535897932384626433832795d0 *
*> double precision, parameter :: DEG_TO_RAD = PI / 180.d0 *
*> double precision, parameter :: RAD_TO_DEG = 180.d0 / PI *
*> *
*> ! big_int is largest int that fits in an i8 field, for max nscm, etc. *
*> integer, parameter :: big_int = 99999999 *
*> *
*> integer, parameter :: RETIRED_INPUT_OPTION = -10301 ! from *
*> sander8 *
*> integer, parameter :: UNSUPPORTED_INPUT_OPTION = -10302 *
*> *
*> character(11), parameter :: info_hdr = '| INFO: ' *
*> character(11), parameter :: warn_hdr = '| WARNING: ' *
*> character(11), parameter :: error_hdr = '| ERROR: ' *
*> character(11), parameter :: extra_line_hdr = '| ' *
*> character(8), parameter :: prog_name = 'PMEMD 10' *
*> character(41), parameter :: use_sander = & *
*> '| Please use sander 10 *
*> instead.' *
*> *
*> end module gbl_constants_mod *
*> make[1]: *** [gbl_constants.o] Error 1 *
*> make[1]: Leaving directory `/home/guest1/amber10/src/pmemd/src' *
*> make: *** [all] Error 2 *
*> *
*> *
*> *
*> Please need suggestion and corrections to install properly *
*> *
*> *
*> Regards *
*> S.Harikrishna *
*> Junior research fellow *
*> Chemistry Deptt *
*> IIT *
*> _______________________________________________ *
*> AMBER mailing list *
*> AMBER.ambermd.org *
*> http://lists.ambermd.org/mailman/listinfo/amber *
*> *



-- 
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Mon Jan 09 2012 - 22:00:02 PST
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