Hi everyone,
I am working with a protein recently crystallized with aid from cymal-6, a
detergent which helped get better resolution from x-ray crystallography. I
plan on doing some Molecular Dynamics with the PDB file created, but it
does include the cymal-6, which is non-covalently bound to the protein. I
was wondering if this would cause problems when applying Amber to this
protein, and if so, could I just delete the molecule from the PDB file
since it isn't covalently bound?
Thanks,
Chris Bryant
--
Chris Bryant
Biochemistry B.S.
Philosophy B.A.
Vice President, Alpha Chi Sigma
Case Western Reserve University 2013
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Received on Wed Jan 04 2012 - 10:30:04 PST
