Eh... it happens somewhere down in the site code. I'll see what I can
scare up. Might be tomorrow some time.
On Mon, Dec 19, 2011 at 5:22 PM, Jeffrey Thalhammer
<jeff.imaginative-software.com> wrote:
>
> On Dec 19, 2011, at 1:39 PM, Lachele Foley (Lists) wrote:
>
>> The code is getting a little old, so do let me know if you find
>> something that doesn't work. But, there is a tool here:
>>
>> http://glycam.ccrc.uga.edu/ccrc/GlycamLITE/Protein/uploadIndex.jsp?option=ff99
>
> Yes, that's exactly what I had in mind. I see that it does a nice job of removing the hydrogens and zeroing/stripping the columns that Amber doesn't want. But the cysteine residues are still CYS rather than CYX.
>
> Anyway, is the source code available under an open source license? Is there an API or command-line interface? The web interface is slick, but not practical for an automated pipeline.
>
> -Jeff
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--
:-) Lachele
Lachele Foley
CCRC/UGA
Athens, GA USA
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Received on Mon Dec 19 2011 - 15:00:03 PST
