Re: [AMBER] error in measuring distances in amber 11

From: Jason Swails <>
Date: Mon, 19 Dec 2011 10:34:28 -0500

Dan answered this question 3 days ago (that should help you find it on the
mailing list archives if you've deleted it). Since you didn't change your
command, I'm guessing you didn't try what he suggested. His suggestion was
good and will most likely fix your problem.

All the best,

On Sun, Dec 18, 2011 at 11:46 AM, Esam Tolba <> wrote:

> I tried to measure the distance using ptraj of amber 11 using the
> command: distance
> dist_73-84_139-150 :73.CA-84.CA :139.CA-150@CA out distance.dat and I
> got output file with the measured distance with all distances equal zero.
> What could be the error.
> I tried to measure the same distances by the same command but using amber 8
> and It worked. is it a problem in amber 11?
> *Best Regards,
> Esam *
> _______________________________________________
> AMBER mailing list

Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
AMBER mailing list
Received on Mon Dec 19 2011 - 08:30:05 PST
Custom Search