Re: [AMBER] Regarding low %CPU efficiency while running production MD

From: <>
Date: Thu, 15 Dec 2011 18:27:09 +0530

  Dear Jason,

             Thank you very much for your immediate response.I was using
the SANDER.MPI module. Using the command "top", I was able to
see the %cpu efficiency of each processor, that indeed kept
changing every second.

          I am planning to run a 50 ns simulation in 10 stages of 5 ns each.

Abinaya Raju,
Project Student,
Institute of Mathematical sciences

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Received on Thu Dec 15 2011 - 05:00:05 PST
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