Starting installation of MTK++ at Tue Nov 22 21:41:09 CET 2011. (cd mtkpp && make install ) make[1]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp' Making install in src make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src' Making install in Diagnostics make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Diagnostics' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I./.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT MTKException.lo -MD -MP -MF .deps/MTKException.Tpo -c -o MTKException.lo MTKException.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I./.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT MTKException.lo -MD -MP -MF .deps/MTKException.Tpo -c MTKException.cpp -o MTKException.o mv -f .deps/MTKException.Tpo .deps/MTKException.Plo /bin/sh ../../libtool --tag=CXX --mode=link g++ -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -o libDiagnostics.la -rpath /usr/local/apps/amber/11-1.5/amber11/lib64 MTKException.lo libtool: link: ar cru .libs/libDiagnostics.a MTKException.o libtool: link: ranlib .libs/libDiagnostics.a libtool: link: ( cd ".libs" && rm -f "libDiagnostics.la" && ln -s "../libDiagnostics.la" "libDiagnostics.la" ) make[4]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Diagnostics' test -z "/usr/local/apps/amber/11-1.5/amber11/lib64" || /bin/mkdir -p "/usr/local/apps/amber/11-1.5/amber11/lib64" test -z "/usr/local/apps/amber/11-1.5/amber11/include/mtkpp/Diagnostics" || /bin/mkdir -p "/usr/local/apps/amber/11-1.5/amber11/include/mtkpp/Diagnostics" /bin/sh ../../libtool --mode=install /usr/bin/install -c libDiagnostics.la '/usr/local/apps/amber/11-1.5/amber11/lib64' /usr/bin/install -c -m 644 MTKException.h '/usr/local/apps/amber/11-1.5/amber11/include/mtkpp/Diagnostics' libtool: install: /usr/bin/install -c .libs/libDiagnostics.lai /usr/local/apps/amber/11-1.5/amber11/lib64/libDiagnostics.la libtool: install: /usr/bin/install -c .libs/libDiagnostics.a /usr/local/apps/amber/11-1.5/amber11/lib64/libDiagnostics.a libtool: install: chmod 644 /usr/local/apps/amber/11-1.5/amber11/lib64/libDiagnostics.a libtool: install: ranlib /usr/local/apps/amber/11-1.5/amber11/lib64/libDiagnostics.a libtool: finish: PATH="/usr/local/apps/tachyon/0.99b2/bin:/usr/local/apps/cuda/4.0.17/cuda/bin:/usr/local/apps/stride/bin:/usr/local/apps/surf/bin:/usr/local/apps/vmd/2011-11-21-SRC/bin:/home/vlad/bin:/usr/local/apps/clustal/2.0.12/bin:/usr/local/apps/modeller/9.9/bin:/usr/local/apps/apbs/1.3/bin:/usr/local/apps/msms/bin:/usr/lib64/mpi/gcc/openmpi/bin:/home/vlad/bin:/usr/local/bin:/usr/bin:/sbin:/usr/sbin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/sbin" ldconfig -n /usr/local/apps/amber/11-1.5/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /usr/local/apps/amber/11-1.5/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[4]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Diagnostics' make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Diagnostics' Making install in tinyxml make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/tinyxml' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT tinyxml.lo -MD -MP -MF .deps/tinyxml.Tpo -c -o tinyxml.lo tinyxml.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT tinyxmlerror.lo -MD -MP -MF .deps/tinyxmlerror.Tpo -c -o tinyxmlerror.lo tinyxmlerror.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT tinystr.lo -MD -MP -MF .deps/tinystr.Tpo -c -o tinystr.lo tinystr.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT tinyxmlparser.lo -MD -MP -MF .deps/tinyxmlparser.Tpo -c -o tinyxmlparser.lo tinyxmlparser.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT tinyxml.lo -MD -MP -MF .deps/tinyxml.Tpo -c tinyxml.cpp -o tinyxml.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT tinystr.lo -MD -MP -MF .deps/tinystr.Tpo -c tinystr.cpp -o tinystr.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT tinyxmlparser.lo -MD -MP -MF .deps/tinyxmlparser.Tpo -c tinyxmlparser.cpp -o tinyxmlparser.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT tinyxmlerror.lo -MD -MP -MF .deps/tinyxmlerror.Tpo -c tinyxmlerror.cpp -o tinyxmlerror.o mv -f .deps/tinystr.Tpo .deps/tinystr.Plo mv -f .deps/tinyxmlerror.Tpo .deps/tinyxmlerror.Plo mv -f .deps/tinyxmlparser.Tpo .deps/tinyxmlparser.Plo mv -f .deps/tinyxml.Tpo .deps/tinyxml.Plo /bin/sh ../../libtool --tag=CXX --mode=link g++ -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -o libtinyxml.la -rpath /usr/local/apps/amber/11-1.5/amber11/lib64 tinyxml.lo tinyxmlerror.lo tinystr.lo tinyxmlparser.lo libtool: link: ar cru .libs/libtinyxml.a tinyxml.o tinyxmlerror.o tinystr.o tinyxmlparser.o libtool: link: ranlib .libs/libtinyxml.a libtool: link: ( cd ".libs" && rm -f "libtinyxml.la" && ln -s "../libtinyxml.la" "libtinyxml.la" ) make[4]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/tinyxml' test -z "/usr/local/apps/amber/11-1.5/amber11/lib64" || /bin/mkdir -p "/usr/local/apps/amber/11-1.5/amber11/lib64" test -z "/usr/local/apps/amber/11-1.5/amber11/include/mtkpp/tinyxml" || /bin/mkdir -p "/usr/local/apps/amber/11-1.5/amber11/include/mtkpp/tinyxml" /bin/sh ../../libtool --mode=install /usr/bin/install -c libtinyxml.la '/usr/local/apps/amber/11-1.5/amber11/lib64' /usr/bin/install -c -m 644 tinystr.h tinyxml.h '/usr/local/apps/amber/11-1.5/amber11/include/mtkpp/tinyxml' libtool: install: /usr/bin/install -c .libs/libtinyxml.lai /usr/local/apps/amber/11-1.5/amber11/lib64/libtinyxml.la libtool: install: /usr/bin/install -c .libs/libtinyxml.a /usr/local/apps/amber/11-1.5/amber11/lib64/libtinyxml.a libtool: install: chmod 644 /usr/local/apps/amber/11-1.5/amber11/lib64/libtinyxml.a libtool: install: ranlib /usr/local/apps/amber/11-1.5/amber11/lib64/libtinyxml.a libtool: finish: PATH="/usr/local/apps/tachyon/0.99b2/bin:/usr/local/apps/cuda/4.0.17/cuda/bin:/usr/local/apps/stride/bin:/usr/local/apps/surf/bin:/usr/local/apps/vmd/2011-11-21-SRC/bin:/home/vlad/bin:/usr/local/apps/clustal/2.0.12/bin:/usr/local/apps/modeller/9.9/bin:/usr/local/apps/apbs/1.3/bin:/usr/local/apps/msms/bin:/usr/lib64/mpi/gcc/openmpi/bin:/home/vlad/bin:/usr/local/bin:/usr/bin:/sbin:/usr/sbin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/sbin" ldconfig -n /usr/local/apps/amber/11-1.5/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /usr/local/apps/amber/11-1.5/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[4]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/tinyxml' make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/tinyxml' Making install in Log make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Log' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I./.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT error.lo -MD -MP -MF .deps/error.Tpo -c -o error.lo error.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I./.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT errorHandler.lo -MD -MP -MF .deps/errorHandler.Tpo -c -o errorHandler.lo errorHandler.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I./.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT errorHandler.lo -MD -MP -MF .deps/errorHandler.Tpo -c errorHandler.cpp -o errorHandler.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I./.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT error.lo -MD -MP -MF .deps/error.Tpo -c error.cpp -o error.o mv -f .deps/error.Tpo .deps/error.Plo mv -f .deps/errorHandler.Tpo .deps/errorHandler.Plo /bin/sh ../../libtool --tag=CXX --mode=link g++ -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -o libLog.la -rpath /usr/local/apps/amber/11-1.5/amber11/lib64 error.lo errorHandler.lo libtool: link: ar cru .libs/libLog.a error.o errorHandler.o libtool: link: ranlib .libs/libLog.a libtool: link: ( cd ".libs" && rm -f "libLog.la" && ln -s "../libLog.la" "libLog.la" ) make[4]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Log' test -z "/usr/local/apps/amber/11-1.5/amber11/lib64" || /bin/mkdir -p "/usr/local/apps/amber/11-1.5/amber11/lib64" test -z "/usr/local/apps/amber/11-1.5/amber11/include/mtkpp/Log" || /bin/mkdir -p "/usr/local/apps/amber/11-1.5/amber11/include/mtkpp/Log" /bin/sh ../../libtool --mode=install /usr/bin/install -c libLog.la '/usr/local/apps/amber/11-1.5/amber11/lib64' /usr/bin/install -c -m 644 error.h errorHandler.h '/usr/local/apps/amber/11-1.5/amber11/include/mtkpp/Log' libtool: install: /usr/bin/install -c .libs/libLog.lai /usr/local/apps/amber/11-1.5/amber11/lib64/libLog.la libtool: install: /usr/bin/install -c .libs/libLog.a /usr/local/apps/amber/11-1.5/amber11/lib64/libLog.a libtool: install: chmod 644 /usr/local/apps/amber/11-1.5/amber11/lib64/libLog.a libtool: install: ranlib /usr/local/apps/amber/11-1.5/amber11/lib64/libLog.a libtool: finish: PATH="/usr/local/apps/tachyon/0.99b2/bin:/usr/local/apps/cuda/4.0.17/cuda/bin:/usr/local/apps/stride/bin:/usr/local/apps/surf/bin:/usr/local/apps/vmd/2011-11-21-SRC/bin:/home/vlad/bin:/usr/local/apps/clustal/2.0.12/bin:/usr/local/apps/modeller/9.9/bin:/usr/local/apps/apbs/1.3/bin:/usr/local/apps/msms/bin:/usr/lib64/mpi/gcc/openmpi/bin:/home/vlad/bin:/usr/local/bin:/usr/bin:/sbin:/usr/sbin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/sbin" ldconfig -n /usr/local/apps/amber/11-1.5/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /usr/local/apps/amber/11-1.5/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[4]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Log' make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Log' Making install in Statistics make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Statistics' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT sheet.lo -MD -MP -MF .deps/sheet.Tpo -c -o sheet.lo sheet.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT BaseStats.lo -MD -MP -MF .deps/BaseStats.Tpo -c -o BaseStats.lo BaseStats.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT ols.lo -MD -MP -MF .deps/ols.Tpo -c -o ols.lo ols.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT pca.lo -MD -MP -MF .deps/pca.Tpo -c -o pca.lo pca.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT sheet.lo -MD -MP -MF .deps/sheet.Tpo -c sheet.cpp -o sheet.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT ols.lo -MD -MP -MF .deps/ols.Tpo -c ols.cpp -o ols.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT pca.lo -MD -MP -MF .deps/pca.Tpo -c pca.cpp -o pca.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT pls.lo -MD -MP -MF .deps/pls.Tpo -c -o pls.lo pls.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT BaseStats.lo -MD -MP -MF .deps/BaseStats.Tpo -c BaseStats.cpp -o BaseStats.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I./.. -I../../src/eigen3b2 -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT pls.lo -MD -MP -MF .deps/pls.Tpo -c pls.cpp -o pls.o mv -f .deps/ols.Tpo .deps/ols.Plo mv -f .deps/BaseStats.Tpo .deps/BaseStats.Plo mv -f .deps/sheet.Tpo .deps/sheet.Plo mv -f .deps/pls.Tpo .deps/pls.Plo mv -f .deps/pca.Tpo .deps/pca.Plo /bin/sh ../../libtool --tag=CXX --mode=link g++ -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -o libStatistics.la -rpath /usr/local/apps/amber/11-1.5/amber11/lib64 sheet.lo BaseStats.lo ols.lo pca.lo pls.lo -lz libtool: link: ar cru .libs/libStatistics.a sheet.o BaseStats.o ols.o pca.o pls.o libtool: link: ranlib .libs/libStatistics.a libtool: link: ( cd ".libs" && rm -f "libStatistics.la" && ln -s "../libStatistics.la" "libStatistics.la" ) make[4]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Statistics' test -z "/usr/local/apps/amber/11-1.5/amber11/lib64" || /bin/mkdir -p "/usr/local/apps/amber/11-1.5/amber11/lib64" test -z "/usr/local/apps/amber/11-1.5/amber11/include/mtkpp/Statistics" || /bin/mkdir -p "/usr/local/apps/amber/11-1.5/amber11/include/mtkpp/Statistics" /bin/sh ../../libtool --mode=install /usr/bin/install -c libStatistics.la '/usr/local/apps/amber/11-1.5/amber11/lib64' /usr/bin/install -c -m 644 table.h sheet.h BaseStats.h ols.h pca.h pls.h '/usr/local/apps/amber/11-1.5/amber11/include/mtkpp/Statistics' libtool: install: /usr/bin/install -c .libs/libStatistics.lai /usr/local/apps/amber/11-1.5/amber11/lib64/libStatistics.la libtool: install: /usr/bin/install -c .libs/libStatistics.a /usr/local/apps/amber/11-1.5/amber11/lib64/libStatistics.a libtool: install: chmod 644 /usr/local/apps/amber/11-1.5/amber11/lib64/libStatistics.a libtool: install: ranlib /usr/local/apps/amber/11-1.5/amber11/lib64/libStatistics.a libtool: finish: PATH="/usr/local/apps/tachyon/0.99b2/bin:/usr/local/apps/cuda/4.0.17/cuda/bin:/usr/local/apps/stride/bin:/usr/local/apps/surf/bin:/usr/local/apps/vmd/2011-11-21-SRC/bin:/home/vlad/bin:/usr/local/apps/clustal/2.0.12/bin:/usr/local/apps/modeller/9.9/bin:/usr/local/apps/apbs/1.3/bin:/usr/local/apps/msms/bin:/usr/lib64/mpi/gcc/openmpi/bin:/home/vlad/bin:/usr/local/bin:/usr/bin:/sbin:/usr/sbin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/sbin" ldconfig -n /usr/local/apps/amber/11-1.5/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /usr/local/apps/amber/11-1.5/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[4]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Statistics' make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Statistics' Making install in Graph make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Graph' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I./.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT vertex.lo -MD -MP -MF .deps/vertex.Tpo -c -o 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/usr/local/apps/amber/11-1.5/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[4]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Graph' make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Graph' Making install in Molecule make[3]: Entering directory 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.deps/gaChromosome.Tpo -c gaChromosome.cpp -o gaChromosome.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I/include -I./.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaAverage.lo -MD -MP -MF .deps/gaAverage.Tpo -c gaAverage.cpp -o gaAverage.o mv -f .deps/gaAverage.Tpo .deps/gaAverage.Plo /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I/include -I./.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaCrossOver.lo -MD -MP -MF .deps/gaCrossOver.Tpo -c -o gaCrossOver.lo gaCrossOver.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I/include -I./.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaCrossOver.lo -MD -MP -MF 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-DHAVE_ZLIB -MT gaGaussian.lo -MD -MP -MF .deps/gaGaussian.Tpo -c -o gaGaussian.lo gaGaussian.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I/include -I./.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaGaussian.lo -MD -MP -MF .deps/gaGaussian.Tpo -c gaGaussian.cpp -o gaGaussian.o mv -f .deps/gaChromosome.Tpo .deps/gaChromosome.Plo /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I/include -I./.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaSelection.lo -MD -MP -MF .deps/gaSelection.Tpo -c -o gaSelection.lo gaSelection.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I/include -I./.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaSelection.lo -MD -MP -MF .deps/gaSelection.Tpo -c gaSelection.cpp -o gaSelection.o mv -f .deps/gaRegion.Tpo .deps/gaRegion.Plo /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I/include -I./.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaOutput.lo -MD -MP -MF .deps/gaOutput.Tpo -c -o gaOutput.lo gaOutput.cpp mv -f .deps/gaCrossOver.Tpo .deps/gaCrossOver.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I/include -I./.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT gaOutput.lo -MD -MP -MF .deps/gaOutput.Tpo -c gaOutput.cpp -o gaOutput.o mv -f .deps/gaMutate.Tpo .deps/gaMutate.Plo mv -f .deps/gaIndividual.Tpo .deps/gaIndividual.Plo mv -f .deps/gaPopulation.Tpo .deps/gaPopulation.Plo mv -f .deps/gaGaussian.Tpo .deps/gaGaussian.Plo mv -f .deps/gaSelection.Tpo .deps/gaSelection.Plo mv -f .deps/gaOperators.Tpo .deps/gaOperators.Plo mv -f .deps/gaOutput.Tpo .deps/gaOutput.Plo /bin/sh ../../libtool --tag=CXX --mode=link g++ -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -o libGA.la -rpath /usr/local/apps/amber/11-1.5/amber11/lib64 gaWorld.lo gaRegion.lo gaPopulation.lo gaIndividual.lo gaChromosome.lo gaGene.lo gaOperators.lo gaAverage.lo gaCrossOver.lo gaMutate.lo gaGaussian.lo gaSelection.lo gaOutput.lo libtool: link: ar cru .libs/libGA.a gaWorld.o gaRegion.o gaPopulation.o gaIndividual.o gaChromosome.o gaGene.o gaOperators.o gaAverage.o gaCrossOver.o gaMutate.o gaGaussian.o gaSelection.o gaOutput.o libtool: link: ranlib .libs/libGA.a libtool: link: ( cd ".libs" && rm -f "libGA.la" && ln -s "../libGA.la" "libGA.la" ) make[4]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/GA' test -z "/usr/local/apps/amber/11-1.5/amber11/lib64" || /bin/mkdir -p "/usr/local/apps/amber/11-1.5/amber11/lib64" test -z "/usr/local/apps/amber/11-1.5/amber11/include/mtkpp/GA" || /bin/mkdir -p "/usr/local/apps/amber/11-1.5/amber11/include/mtkpp/GA" /bin/sh ../../libtool --mode=install /usr/bin/install -c libGA.la '/usr/local/apps/amber/11-1.5/amber11/lib64' /usr/bin/install -c -m 644 gaWorld.h gaRegion.h gaPopulation.h gaIndividual.h gaChromosome.h gaGene.h gaOperators.h gaAverage.h gaCrossOver.h gaMutate.h gaGaussian.h gaSelection.h gaOutput.h gaVersion.h '/usr/local/apps/amber/11-1.5/amber11/include/mtkpp/GA' libtool: install: /usr/bin/install -c .libs/libGA.lai /usr/local/apps/amber/11-1.5/amber11/lib64/libGA.la libtool: install: /usr/bin/install -c .libs/libGA.a /usr/local/apps/amber/11-1.5/amber11/lib64/libGA.a libtool: install: chmod 644 /usr/local/apps/amber/11-1.5/amber11/lib64/libGA.a libtool: install: ranlib /usr/local/apps/amber/11-1.5/amber11/lib64/libGA.a libtool: finish: PATH="/usr/local/apps/tachyon/0.99b2/bin:/usr/local/apps/cuda/4.0.17/cuda/bin:/usr/local/apps/stride/bin:/usr/local/apps/surf/bin:/usr/local/apps/vmd/2011-11-21-SRC/bin:/home/vlad/bin:/usr/local/apps/clustal/2.0.12/bin:/usr/local/apps/modeller/9.9/bin:/usr/local/apps/apbs/1.3/bin:/usr/local/apps/msms/bin:/usr/lib64/mpi/gcc/openmpi/bin:/home/vlad/bin:/usr/local/bin:/usr/bin:/sbin:/usr/sbin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/sbin" ldconfig -n /usr/local/apps/amber/11-1.5/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /usr/local/apps/amber/11-1.5/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[4]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/GA' make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/GA' Making install in MM make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/MM' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I./.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT mmPotential.lo -MD -MP -MF .deps/mmPotential.Tpo -c -o mmPotential.lo mmPotential.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I./.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT amber.lo -MD -MP -MF .deps/amber.Tpo -c -o amber.lo amber.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I./.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT amberBond.lo -MD -MP -MF .deps/amberBond.Tpo -c -o amberBond.lo amberBond.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I./.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT amberAngle.lo -MD -MP -MF .deps/amberAngle.Tpo -c -o amberAngle.lo amberAngle.cpp /bin/sh ../../libtool 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`/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/MM' test -z "/usr/local/apps/amber/11-1.5/amber11/lib64" || /bin/mkdir -p "/usr/local/apps/amber/11-1.5/amber11/lib64" test -z "/usr/local/apps/amber/11-1.5/amber11/include/mtkpp/MM" || /bin/mkdir -p "/usr/local/apps/amber/11-1.5/amber11/include/mtkpp/MM" /bin/sh ../../libtool --mode=install /usr/bin/install -c libMM.la '/usr/local/apps/amber/11-1.5/amber11/lib64' /usr/bin/install -c -m 644 mmPotential.h amber.h amberBond.h amberAngle.h amberTorsion.h amberImproper.h amberNonBonded.h '/usr/local/apps/amber/11-1.5/amber11/include/mtkpp/MM' libtool: install: /usr/bin/install -c .libs/libMM.lai /usr/local/apps/amber/11-1.5/amber11/lib64/libMM.la libtool: install: /usr/bin/install -c .libs/libMM.a /usr/local/apps/amber/11-1.5/amber11/lib64/libMM.a libtool: install: chmod 644 /usr/local/apps/amber/11-1.5/amber11/lib64/libMM.a libtool: install: ranlib /usr/local/apps/amber/11-1.5/amber11/lib64/libMM.a libtool: finish: 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execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[4]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/MM' make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/MM' Making install in Minimizers make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Minimizers' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I./.. -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT lbfgs.lo -MD -MP -MF .deps/lbfgs.Tpo -c -o lbfgs.lo lbfgs.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. 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execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[4]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Minimizers' make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Minimizers' Making install in Parsers make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Parsers' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/boost-1.38.0 -I/include -I./.. -I../../src/eigen3b2 -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -MT 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"/usr/local/apps/amber/11-1.5/amber11/include/mtkpp/Parsers" /bin/sh ../../libtool --mode=install /usr/bin/install -c libParsers.la '/usr/local/apps/amber/11-1.5/amber11/lib64' /usr/bin/install -c -m 644 parsingException.h stdLibParser.h baseParser.h mtkppParser.h commLineOptions.h inputParser.h molParser.h mol2Parser.h pdbParser.h pamParser.h dcParser.h sdfParser.h xyzParser.h elementParser.h paramParser.h atomTypeParser.h gaParser.h StringManip.h domErrorHandler.h gaussianParser.h zmatParser.h prepParser.h acParser.h frcmodParser.h dMParser.h amberParser.h xmlConvertors.h '/usr/local/apps/amber/11-1.5/amber11/include/mtkpp/Parsers' libtool: install: /usr/bin/install -c .libs/libParsers.lai /usr/local/apps/amber/11-1.5/amber11/lib64/libParsers.la libtool: install: /usr/bin/install -c .libs/libParsers.a /usr/local/apps/amber/11-1.5/amber11/lib64/libParsers.a libtool: install: chmod 644 /usr/local/apps/amber/11-1.5/amber11/lib64/libParsers.a libtool: install: ranlib /usr/local/apps/amber/11-1.5/amber11/lib64/libParsers.a libtool: finish: PATH="/usr/local/apps/tachyon/0.99b2/bin:/usr/local/apps/cuda/4.0.17/cuda/bin:/usr/local/apps/stride/bin:/usr/local/apps/surf/bin:/usr/local/apps/vmd/2011-11-21-SRC/bin:/home/vlad/bin:/usr/local/apps/clustal/2.0.12/bin:/usr/local/apps/modeller/9.9/bin:/usr/local/apps/apbs/1.3/bin:/usr/local/apps/msms/bin:/usr/lib64/mpi/gcc/openmpi/bin:/home/vlad/bin:/usr/local/bin:/usr/bin:/sbin:/usr/sbin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/sbin" ldconfig -n /usr/local/apps/amber/11-1.5/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /usr/local/apps/amber/11-1.5/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[4]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Parsers' make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Parsers' Making install in Utils make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Utils' make[4]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Utils' make[4]: Nothing to be done for `install-exec-am'. test -z 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'/usr/local/apps/amber/11-1.5/amber11/bin' libtool: install: /usr/bin/install -c MTKppConstants /usr/local/apps/amber/11-1.5/amber11/bin/MTKppConstants libtool: install: /usr/bin/install -c capActiveSite /usr/local/apps/amber/11-1.5/amber11/bin/capActiveSite libtool: install: /usr/bin/install -c frcmod2xml /usr/local/apps/amber/11-1.5/amber11/bin/frcmod2xml libtool: install: /usr/bin/install -c func /usr/local/apps/amber/11-1.5/amber11/bin/func libtool: install: /usr/bin/install -c hybrid /usr/local/apps/amber/11-1.5/amber11/bin/hybrid libtool: install: /usr/bin/install -c mmE /usr/local/apps/amber/11-1.5/amber11/bin/mmE libtool: install: /usr/bin/install -c prep2xml /usr/local/apps/amber/11-1.5/amber11/bin/prep2xml libtool: install: /usr/bin/install -c protonator /usr/local/apps/amber/11-1.5/amber11/bin/protonator libtool: install: /usr/bin/install -c sequenceAligner /usr/local/apps/amber/11-1.5/amber11/bin/sequenceAligner libtool: install: /usr/bin/install -c stats 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-L../../src/Molecule/ -L../../src/Statistics/ -L../../src/GA/ -L../../src/tinyxml/ /usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Molecule/.libs/libMolecule.a /usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Graph/.libs/libGraph.a /usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Diagnostics/.libs/libDiagnostics.a /usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Statistics/.libs/libStatistics.a /usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Log/.libs/libLog.a /usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/GA/.libs/libGA.a /usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/tinyxml/.libs/libtinyxml.a -lz mv -f .deps/linearAlgebraTest.Tpo .deps/linearAlgebraTest.Po /bin/sh ../libtool --tag=CXX --mode=link g++ -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -L../src/Diagnostics -L../src/Molecule -L../src/Log -L../src/Graph -L../src/GA -L../src/Statistics -L../src/Parsers -L../src/tinyxml -o linearAlgebraTest linearAlgebraTest.o -lDiagnostics -lMolecule -lLog -lGraph -lGA -lStatistics -lParsers -ltinyxml -lz libtool: link: g++ -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -DHAVE_ZLIB -o linearAlgebraTest linearAlgebraTest.o -L../src/Diagnostics -L../src/Molecule -L../src/Log -L../src/Graph -L../src/GA -L../src/Statistics -L../src/Parsers -L../src/tinyxml -L../../src/Graph/ -L../../src/Log/ -L../../src/Diagnostics/ /usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Parsers/.libs/libParsers.a -L../../src/Molecule/ -L../../src/Statistics/ -L../../src/GA/ -L../../src/tinyxml/ /usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Molecule/.libs/libMolecule.a /usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Graph/.libs/libGraph.a /usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Diagnostics/.libs/libDiagnostics.a /usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Statistics/.libs/libStatistics.a /usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/Log/.libs/libLog.a /usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/GA/.libs/libGA.a /usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/src/tinyxml/.libs/libtinyxml.a -lz make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/tests' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/tests' make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/tests' make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp' make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/local/apps/amber/11-1.5/amber11/include/mtkpp" || /bin/mkdir -p "/usr/local/apps/amber/11-1.5/amber11/include/mtkpp" /usr/bin/install -c -m 644 config.h '/usr/local/apps/amber/11-1.5/amber11/include/mtkpp' make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp' make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp' make[1]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp' (cd mtkpp/tests && make create ) make[1]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/tests' make[1]: Nothing to be done for `create'. make[1]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/mtkpp/tests' Completed installation of MTK++ Starting installation of AmberTools, version 1.5 serial at Tue Nov 22 21:42:15 CET 2011. (cd ucpp-1.3 && make install ) make[1]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/ucpp-1.3' gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE mem.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE nhash.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE cpp.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE lexer.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE assert.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE macro.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE eval.c gcc -o ucpp mem.o nhash.o cpp.o lexer.o assert.o macro.o eval.o mv ucpp /usr/local/apps/amber/11-1.5/amber11/bin make[1]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/ucpp-1.3' (cd byacc && make install ) make[1]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/byacc' gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o closure.o closure.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o error.o error.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o lalr.o lalr.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o lr0.o lr0.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o main.o main.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o mkpar.o mkpar.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o output.o output.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o reader.o reader.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o skeleton.o skeleton.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o symtab.o symtab.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o verbose.o verbose.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o warshall.o warshall.c main.o: In function `create_file_names': main.c:(.text+0x656): warning: the use of `mktemp' is dangerous, better use `mkstemp' mv yacc /usr/local/apps/amber/11-1.5/amber11/bin make[1]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/byacc' (cd arpack && make install ); make[1]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/arpack' gfortran -c -O3 -mtune=generic -o ivout.o ivout.f gfortran -c -O3 -mtune=generic -o dvout.o dvout.f gfortran -c -O3 -mtune=generic -o dgetv0.o dgetv0.f gfortran -c -O3 -mtune=generic -o dlaqrb.o dlaqrb.f gfortran -c -O3 -mtune=generic -o dnaitr.o dnaitr.f gfortran -c -O3 -mtune=generic -o dnapps.o dnapps.f gfortran -c -O3 -mtune=generic -o dnaup2.o dnaup2.f gfortran -c -O3 -mtune=generic -o dnaupd.o dnaupd.f gfortran -c -O3 -mtune=generic -o dnconv.o dnconv.f gfortran -c -O3 -mtune=generic -o dneigh.o dneigh.f gfortran -c -O3 -mtune=generic -o dmout.o dmout.f gfortran -c -O3 -mtune=generic -o dneupd.o dneupd.f gfortran -c -O3 -mtune=generic -o dngets.o dngets.f gfortran -c -O3 -mtune=generic -o dsaitr.o dsaitr.f gfortran -c -O3 -mtune=generic -o dsapps.o dsapps.f gfortran -c -O3 -mtune=generic -o dsaup2.o dsaup2.f gfortran -c -O3 -mtune=generic -o dsaupd.o dsaupd.f gfortran -c -O3 -mtune=generic -o dsconv.o dsconv.f gfortran -c -O3 -mtune=generic -o dseigt.o dseigt.f gfortran -c -O3 -mtune=generic -o dsesrt.o dsesrt.f gfortran -c -O3 -mtune=generic -o dseupd.o dseupd.f gfortran -c -O3 -mtune=generic -o dsgets.o dsgets.f gfortran -c -O3 -mtune=generic -o dsortc.o dsortc.f gfortran -c -O3 -mtune=generic -o dsortr.o dsortr.f gfortran -c -O3 -mtune=generic -o dstatn.o dstatn.f gfortran -c -O3 -mtune=generic -o dstats.o dstats.f gfortran -c -O3 -mtune=generic -o dstqrb.o dstqrb.f gfortran -c -O3 -mtune=generic -o dsarpack.o dsarpack.f dsarpack.f:424.3: 12 go to 11 1 dsarpack.f:199.15: go to (12,18) label 2 Warning: Label at (1) is not in the same block as the GOTO statement at (2) dsarpack.f:545.3: 18 go to 17 1 dsarpack.f:199.18: go to (12,18) label 2 Warning: Label at (1) is not in the same block as the GOTO statement at (2) gcc -c -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o wallclock.o wallclock.c ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o ar: creating arpack.a a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - dsarpack.o a - wallclock.o ranlib arpack.a mv arpack.a /usr/local/apps/amber/11-1.5/amber11/lib make[1]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/arpack' (cd lapack && make install ) make[1]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/lapack' gfortran -c -O3 -mtune=generic -o dsyev.o dsyev.f gfortran -c -O3 -mtune=generic -o dsygv.o dsygv.f gfortran -c -O3 -mtune=generic -o dlansy.o dlansy.f gfortran -c -O3 -mtune=generic -o dsytrd.o dsytrd.f gfortran -c -O3 -mtune=generic -o dorgtr.o dorgtr.f gfortran -c -O3 -mtune=generic -o dsteqr.o dsteqr.f gfortran -c -O3 -mtune=generic -o dsterf.o dsterf.f gfortran -c -O3 -mtune=generic -o dlascl.o dlascl.f gfortran -c -O0 -o dlamch.o dlamch.f gfortran -c -O3 -mtune=generic -o ilaenv.o ilaenv.f gfortran -c -O3 -mtune=generic -o dlassq.o dlassq.f gfortran -c -O3 -mtune=generic -o dsytd2.o dsytd2.f gfortran -c -O3 -mtune=generic -o dlatrd.o dlatrd.f gfortran -c -O3 -mtune=generic -o dorgql.o dorgql.f gfortran -c -O3 -mtune=generic -o dorgqr.o dorgqr.f gfortran -c -O3 -mtune=generic -o dlasrt.o dlasrt.f gfortran -c -O3 -mtune=generic -o dlaset.o dlaset.f gfortran -c -O3 -mtune=generic -o dlanst.o dlanst.f gfortran -c -O3 -mtune=generic -o dlaev2.o dlaev2.f gfortran -c -O3 -mtune=generic -o dlasr.o dlasr.f gfortran -c -O3 -mtune=generic -o dlapy2.o dlapy2.f gfortran -c -O3 -mtune=generic -o dlartg.o dlartg.f gfortran -c -O3 -mtune=generic -o dlae2.o dlae2.f gfortran -c -O3 -mtune=generic -o dorg2r.o dorg2r.f gfortran -c -O3 -mtune=generic -o dlarft.o dlarft.f gfortran -c -O3 -mtune=generic -o dlarfb.o dlarfb.f gfortran -c -O3 -mtune=generic -o dorg2l.o dorg2l.f gfortran -c -O3 -mtune=generic -o dlarfg.o dlarfg.f gfortran -c -O3 -mtune=generic -o dlarf.o dlarf.f gfortran -c -O3 -mtune=generic -o dspev.o dspev.f gfortran -c -O3 -mtune=generic -o dlansp.o dlansp.f gfortran -c -O3 -mtune=generic -o dsptrd.o dsptrd.f gfortran -c -O3 -mtune=generic -o dopgtr.o dopgtr.f gfortran -c -O3 -mtune=generic -o dppsv.o dppsv.f gfortran -c -O3 -mtune=generic -o dspsv.o dspsv.f gfortran -c -O3 -mtune=generic -o dgeev.o dgeev.f gfortran -c -O3 -mtune=generic -o dsptrs.o dsptrs.f gfortran -c -O3 -mtune=generic -o dsptrf.o dsptrf.f gfortran -c -O3 -mtune=generic -o dpptrs.o dpptrs.f gfortran -c -O3 -mtune=generic -o dpptrf.o dpptrf.f gfortran -c -O3 -mtune=generic -o dgebak.o dgebak.f gfortran -c -O3 -mtune=generic -o dtrevc.o dtrevc.f gfortran -c -O3 -mtune=generic -o dlacpy.o dlacpy.f gfortran -c -O3 -mtune=generic -o dhseqr.o dhseqr.f gfortran -c -O3 -mtune=generic -o dorghr.o dorghr.f gfortran -c -O3 -mtune=generic -o dgehrd.o dgehrd.f gfortran -c -O3 -mtune=generic -o dgebal.o dgebal.f gfortran -c -O3 -mtune=generic -o dlange.o dlange.f gfortran -c -O3 -mtune=generic -o dlabad.o dlabad.f gfortran -c -O3 -mtune=generic -o dlahqr.o dlahqr.f gfortran -c -O3 -mtune=generic -o dlarfx.o dlarfx.f gfortran -c -O3 -mtune=generic -o dlanhs.o dlanhs.f gfortran -c -O3 -mtune=generic -o dlaln2.o dlaln2.f gfortran -c -O3 -mtune=generic -o dgehd2.o dgehd2.f gfortran -c -O3 -mtune=generic -o dlahrd.o dlahrd.f gfortran -c -O3 -mtune=generic -o dlanv2.o dlanv2.f gfortran -c -O3 -mtune=generic -o dladiv.o dladiv.f gfortran -c -O3 -mtune=generic -o dgerq2.o dgerq2.f gfortran -c -O3 -mtune=generic -o dorm2r.o dorm2r.f gfortran -c -O3 -mtune=generic -o dlarnv.o dlarnv.f gfortran -c -O3 -mtune=generic -o dgeqr2.o dgeqr2.f gfortran -c -O3 -mtune=generic -o dlaruv.o dlaruv.f gfortran -c -O3 -mtune=generic -o dspevd.o dspevd.f gfortran -c -O3 -mtune=generic -o dstedc.o dstedc.f gfortran -c -O3 -mtune=generic -o dopmtr.o dopmtr.f gfortran -c -O3 -mtune=generic -o dlaed0.o dlaed0.f gfortran -c -O3 -mtune=generic -o dlaed1.o dlaed1.f gfortran -c -O3 -mtune=generic -o dlaed7.o dlaed7.f gfortran -c -O3 -mtune=generic -o dlaeda.o dlaeda.f gfortran -c -O3 -mtune=generic -o dlaed8.o dlaed8.f gfortran -c -O3 -mtune=generic -o dlaed9.o dlaed9.f gfortran -c -O3 -mtune=generic -o dlamrg.o dlamrg.f gfortran -c -O3 -mtune=generic -o dlaed2.o dlaed2.f gfortran -c -O3 -mtune=generic -o dlaed3.o dlaed3.f gfortran -c -O3 -mtune=generic -o dpotrs.o dpotrs.f gfortran -c -O3 -mtune=generic -o dpotrf.o dpotrf.f gfortran -c -O3 -mtune=generic -o dsygst.o dsygst.f gfortran -c -O3 -mtune=generic -o dpotf2.o dpotf2.f gfortran -c -O3 -mtune=generic -o dsygs2.o dsygs2.f gfortran -c -O3 -mtune=generic -o dposv.o dposv.f gfortran -c -O3 -mtune=generic -o dlaebz.o dlaebz.f gfortran -c -O3 -mtune=generic -o dlagtf.o dlagtf.f gfortran -c -O3 -mtune=generic -o dlagts.o dlagts.f gfortran -c -O3 -mtune=generic -o dormqr.o dormqr.f gfortran -c -O3 -mtune=generic -o dormql.o dormql.f gfortran -c -O3 -mtune=generic -o dorm2l.o dorm2l.f gfortran -c -O3 -mtune=generic -o dlaed4.o dlaed4.f gfortran -c -O3 -mtune=generic -o dlaed5.o dlaed5.f gfortran -c -O3 -mtune=generic -o dlaed6.o dlaed6.f gfortran -c -O3 -mtune=generic -o ieeeck.o ieeeck.f gfortran -c -O3 -mtune=generic -o dsyevx.o dsyevx.f gfortran -c -O3 -mtune=generic -o dsyevd.o dsyevd.f gfortran -c -O3 -mtune=generic -o dstebz.o dstebz.f gfortran -c -O3 -mtune=generic -o dstein.o dstein.f gfortran -c -O3 -mtune=generic -o dormtr.o dormtr.f gfortran -c -O3 -mtune=generic -o zheev.o zheev.f gfortran -c -O3 -mtune=generic -o lsame.o lsame.f gfortran -c -O3 -mtune=generic -o zlanhe.o zlanhe.f gfortran -c -O3 -mtune=generic -o zlascl.o zlascl.f gfortran -c -O3 -mtune=generic -o zhetrd.o zhetrd.f gfortran -c -O3 -mtune=generic -o zungtr.o zungtr.f gfortran -c -O3 -mtune=generic -o zsteqr.o zsteqr.f gfortran -c -O3 -mtune=generic -o zlassq.o zlassq.f gfortran -c -O3 -mtune=generic -o zlatrd.o zlatrd.f gfortran -c -O3 -mtune=generic -o zhetd2.o zhetd2.f gfortran -c -O3 -mtune=generic -o zungql.o zungql.f gfortran -c -O3 -mtune=generic -o zungqr.o zungqr.f gfortran -c -O3 -mtune=generic -o zlasr.o zlasr.f gfortran -c -O3 -mtune=generic -o zlaset.o zlaset.f gfortran -c -O3 -mtune=generic -o zlacgv.o zlacgv.f gfortran -c -O3 -mtune=generic -o zlarfg.o zlarfg.f gfortran -c -O3 -mtune=generic -o zung2l.o zung2l.f gfortran -c -O3 -mtune=generic -o zlarft.o zlarft.f gfortran -c -O3 -mtune=generic -o zlarfb.o zlarfb.f gfortran -c -O3 -mtune=generic -o zung2r.o zung2r.f gfortran -c -O3 -mtune=generic -o dlapy3.o dlapy3.f gfortran -c -O3 -mtune=generic -o zladiv.o zladiv.f gfortran -c -O3 -mtune=generic -o zlarf.o zlarf.f gfortran -c -O3 -mtune=generic -o dgesvd.o dgesvd.f gfortran -c -O3 -mtune=generic -o dgebrd.o dgebrd.f gfortran -c -O3 -mtune=generic -o dgebd2.o dgebd2.f gfortran -c -O3 -mtune=generic -o dlabrd.o dlabrd.f gfortran -c -O3 -mtune=generic -o dorgbr.o dorgbr.f gfortran -c -O3 -mtune=generic -o dbdsqr.o dbdsqr.f gfortran -c -O3 -mtune=generic -o dgeqrf.o dgeqrf.f gfortran -c -O3 -mtune=generic -o dormbr.o dormbr.f gfortran -c -O3 -mtune=generic -o dgelqf.o dgelqf.f gfortran -c -O3 -mtune=generic -o dorglq.o dorglq.f gfortran -c -O3 -mtune=generic -o dlas2.o dlas2.f gfortran -c -O3 -mtune=generic -o dlasq1.o dlasq1.f gfortran -c -O3 -mtune=generic -o dlasv2.o dlasv2.f gfortran -c -O3 -mtune=generic -o dgelq2.o dgelq2.f gfortran -c -O3 -mtune=generic -o dorgl2.o dorgl2.f gfortran -c -O3 -mtune=generic -o dlasq2.o dlasq2.f gfortran -c -O3 -mtune=generic -o dormlq.o dormlq.f gfortran -c -O3 -mtune=generic -o dlasq3.o dlasq3.f gfortran -c -O3 -mtune=generic -o dlasq4.o dlasq4.f gfortran -c -O3 -mtune=generic -o dlasq5.o dlasq5.f gfortran -c -O3 -mtune=generic -o dorml2.o dorml2.f gfortran -c -O3 -mtune=generic -o dlasq6.o dlasq6.f gfortran -c -O3 -mtune=generic -o dgesv.o dgesv.f gfortran -c -O3 -mtune=generic -o dgetrs.o dgetrs.f gfortran -c -O3 -mtune=generic -o dlaswp.o dlaswp.f gfortran -c -O3 -mtune=generic -o dgetrf.o dgetrf.f gfortran -c -O3 -mtune=generic -o dgetf2.o dgetf2.f gfortran -c -O3 -mtune=generic -o dsysv.o dsysv.f gfortran -c -O3 -mtune=generic -o dsytrs.o dsytrs.f gfortran -c -O3 -mtune=generic -o dsytrf.o dsytrf.f gfortran -c -O3 -mtune=generic -o dlasyf.o dlasyf.f gfortran -c -O3 -mtune=generic -o dsytf2.o dsytf2.f gfortran -c -O3 -mtune=generic -o dgelsd.o dgelsd.f gfortran -c -O3 -mtune=generic -o dlalsd.o dlalsd.f gfortran -c -O3 -mtune=generic -o dlasdq.o dlasdq.f gfortran -c -O3 -mtune=generic -o dlasda.o dlasda.f gfortran -c -O3 -mtune=generic -o dlalsa.o dlalsa.f gfortran -c -O3 -mtune=generic -o dlasd6.o dlasd6.f gfortran -c -O3 -mtune=generic -o dlals0.o dlals0.f gfortran -c -O3 -mtune=generic -o dlasdt.o dlasdt.f gfortran -c -O3 -mtune=generic -o dlasd7.o dlasd7.f gfortran -c -O3 -mtune=generic -o dlasd8.o dlasd8.f gfortran -c -O3 -mtune=generic -o dlasd4.o dlasd4.f gfortran -c -O3 -mtune=generic -o dlasd5.o dlasd5.f gfortran -c -O3 -mtune=generic -o dgelsy.o dgelsy.f gfortran -c -O3 -mtune=generic -o dlaic1.o dlaic1.f gfortran -c -O3 -mtune=generic -o dtzrzf.o dtzrzf.f gfortran -c -O3 -mtune=generic -o dormrz.o dormrz.f gfortran -c -O3 -mtune=generic -o dlarzt.o dlarzt.f gfortran -c -O3 -mtune=generic -o dlarzb.o dlarzb.f gfortran -c -O3 -mtune=generic -o dlatrz.o dlatrz.f gfortran -c -O3 -mtune=generic -o dormr3.o dormr3.f gfortran -c -O3 -mtune=generic -o dgeqp3.o dgeqp3.f gfortran -c -O3 -mtune=generic -o dlarz.o dlarz.f gfortran -c -O3 -mtune=generic -o dlaqps.o dlaqps.f gfortran -c -O3 -mtune=generic -o dlaqp2.o dlaqp2.f gfortran -c -O3 -mtune=generic -o dspevx.o dspevx.f gfortran -c -O3 -mtune=generic -o dsyevr.o dsyevr.f gfortran -c -O3 -mtune=generic -o dstegr.o dstegr.f gfortran -c -O3 -mtune=generic -o dlarrv.o dlarrv.f gfortran -c -O3 -mtune=generic -o dlarre.o dlarre.f gfortran -c -O3 -mtune=generic -o dlarrb.o dlarrb.f gfortran -c -O3 -mtune=generic -o dlar1v.o dlar1v.f gfortran -c -O3 -mtune=generic -o dlarrf.o dlarrf.f gfortran -c -O3 -mtune=generic -o dggev.o dggev.f gfortran -c -O3 -mtune=generic -o dhgeqz.o dhgeqz.f gfortran -c -O3 -mtune=generic -o dgghrd.o dgghrd.f gfortran -c -O3 -mtune=generic -o dtgevc.o dtgevc.f gfortran -c -O3 -mtune=generic -o dggbak.o dggbak.f gfortran -c -O3 -mtune=generic -o dggbal.o dggbal.f gfortran -c -O3 -mtune=generic -o dlag2.o dlag2.f gfortran -c -O3 -mtune=generic -o disnan.o disnan.f gfortran -c -O3 -mtune=generic -o dlaisnan.o dlaisnan.f gfortran -c -O3 -mtune=generic -o dlarfp.o dlarfp.f gfortran -c -O3 -mtune=generic -o dstemr.o dstemr.f gfortran -c -O3 -mtune=generic -o dlarra.o dlarra.f gfortran -c -O3 -mtune=generic -o dlarrc.o dlarrc.f gfortran -c -O3 -mtune=generic -o dlarrd.o dlarrd.f gfortran -c -O3 -mtune=generic -o dlarrj.o dlarrj.f gfortran -c -O3 -mtune=generic -o dlarrk.o dlarrk.f gfortran -c -O3 -mtune=generic -o dlarrr.o dlarrr.f gfortran -c -O3 -mtune=generic -o dlaneg.o dlaneg.f gfortran -c -O3 -mtune=generic -o dlaqr0.o dlaqr0.f gfortran -c -O3 -mtune=generic -o dlaqr1.o dlaqr1.f gfortran -c -O3 -mtune=generic -o dlaqr2.o dlaqr2.f gfortran -c -O3 -mtune=generic -o dlaqr3.o dlaqr3.f gfortran -c -O3 -mtune=generic -o dlaqr4.o dlaqr4.f gfortran -c -O3 -mtune=generic -o dlaqr5.o dlaqr5.f gfortran -c -O3 -mtune=generic -o dlahr2.o dlahr2.f gfortran -c -O3 -mtune=generic -o dormhr.o dormhr.f gfortran -c -O3 -mtune=generic -o dtrexc.o dtrexc.f gfortran -c -O3 -mtune=generic -o dlaexc.o dlaexc.f gfortran -c -O3 -mtune=generic -o dlasy2.o dlasy2.f gfortran -c -O3 -mtune=generic -o iparmq.o iparmq.f gfortran -c -O3 -mtune=generic -o iladlc.o iladlc.f gfortran -c -O3 -mtune=generic -o iladlr.o iladlr.f ar rv lapack.a dsyev.o dsygv.o dlansy.o dsytrd.o dorgtr.o dsteqr.o dsterf.o dlascl.o dlamch.o ilaenv.o dlassq.o dsytd2.o dlatrd.o dorgql.o dorgqr.o dlasrt.o dlaset.o dlanst.o dlaev2.o dlasr.o dlapy2.o dlartg.o dlae2.o dorg2r.o dlarft.o dlarfb.o dorg2l.o dlarfg.o dlarf.o dspev.o dlansp.o dsptrd.o dopgtr.o dppsv.o dspsv.o dgeev.o dsptrs.o dsptrf.o dpptrs.o dpptrf.o dgebak.o dtrevc.o dlacpy.o dhseqr.o dorghr.o dgehrd.o dgebal.o dlange.o dlabad.o dlahqr.o dlarfx.o dlanhs.o dlaln2.o dgehd2.o dlahrd.o dlanv2.o dladiv.o dgerq2.o dorm2r.o dlarnv.o dgeqr2.o dlaruv.o dspevd.o dstedc.o dopmtr.o dlaed0.o dlaed1.o dlaed7.o dlaeda.o dlaed8.o dlaed9.o dlamrg.o dlaed2.o dlaed3.o dpotrs.o dpotrf.o dsygst.o dpotf2.o dsygs2.o dposv.o dlaebz.o dlagtf.o dlagts.o dormqr.o dormql.o dorm2l.o dlaed4.o dlaed5.o dlaed6.o ieeeck.o dsyevx.o dsyevd.o dstebz.o dstein.o dormtr.o zheev.o lsame.o zlanhe.o zlascl.o zhetrd.o zungtr.o zsteqr.o zlassq.o zlatrd.o zhetd2.o zungql.o zungqr.o zlasr.o zlaset.o zlacgv.o zlarfg.o zung2l.o zlarft.o zlarfb.o zung2r.o dlapy3.o zladiv.o zlarf.o dgesvd.o dgebrd.o dgebd2.o dlabrd.o dorgbr.o dbdsqr.o dgeqrf.o dormbr.o dgelqf.o dorglq.o dlas2.o dlasq1.o dlasv2.o dgelq2.o dorgl2.o dlasq2.o dormlq.o dlasq3.o dlasq4.o dlasq5.o dorml2.o dlasq6.o dgesv.o dgetrs.o dlaswp.o dgetrf.o dgetf2.o dsysv.o dsytrs.o dsytrf.o dlasyf.o dsytf2.o dgelsd.o dlalsd.o dlasdq.o dlasda.o dlalsa.o dlasd6.o dlals0.o dlasdt.o dlasd7.o dlasd8.o dlasd4.o dlasd5.o dgelsy.o dlaic1.o dtzrzf.o dormrz.o dlarzt.o dlarzb.o dlatrz.o dormr3.o dgeqp3.o dlarz.o dlaqps.o dlaqp2.o dspevx.o dsyevr.o dstegr.o dlarrv.o dlarre.o dlarrb.o dlar1v.o dlarrf.o dggev.o dhgeqz.o dgghrd.o dtgevc.o dggbak.o dggbal.o dlag2.o disnan.o dlaisnan.o dlarfp.o dstemr.o dlarra.o dlarrc.o dlarrd.o dlarrj.o dlarrk.o dlarrr.o dlaneg.o dlaqr0.o dlaqr1.o dlaqr2.o dlaqr3.o dlaqr4.o dlaqr5.o dlahr2.o dormhr.o dtrexc.o dlaexc.o dlasy2.o iparmq.o iladlc.o iladlr.o ar: creating lapack.a a - dsyev.o a - dsygv.o a - dlansy.o a - dsytrd.o a - dorgtr.o a - dsteqr.o a - dsterf.o a - dlascl.o a - dlamch.o a - ilaenv.o a - dlassq.o a - dsytd2.o a - dlatrd.o a - dorgql.o a - dorgqr.o a - dlasrt.o a - dlaset.o a - dlanst.o a - dlaev2.o a - dlasr.o a - dlapy2.o a - dlartg.o a - dlae2.o a - dorg2r.o a - dlarft.o a - dlarfb.o a - dorg2l.o a - dlarfg.o a - dlarf.o a - dspev.o a - dlansp.o a - dsptrd.o a - dopgtr.o a - dppsv.o a - dspsv.o a - dgeev.o a - dsptrs.o a - dsptrf.o a - dpptrs.o a - dpptrf.o a - dgebak.o a - dtrevc.o a - dlacpy.o a - dhseqr.o a - dorghr.o a - dgehrd.o a - dgebal.o a - dlange.o a - dlabad.o a - dlahqr.o a - dlarfx.o a - dlanhs.o a - dlaln2.o a - dgehd2.o a - dlahrd.o a - dlanv2.o a - dladiv.o a - dgerq2.o a - dorm2r.o a - dlarnv.o a - dgeqr2.o a - dlaruv.o a - dspevd.o a - dstedc.o a - dopmtr.o a - dlaed0.o a - dlaed1.o a - dlaed7.o a - dlaeda.o a - dlaed8.o a - dlaed9.o a - dlamrg.o a - dlaed2.o a - dlaed3.o a - dpotrs.o a - dpotrf.o a - dsygst.o a - dpotf2.o a - dsygs2.o a - dposv.o a - dlaebz.o a - dlagtf.o a - dlagts.o a - dormqr.o a - dormql.o a - dorm2l.o a - dlaed4.o a - dlaed5.o a - dlaed6.o a - ieeeck.o a - dsyevx.o a - dsyevd.o a - dstebz.o a - dstein.o a - dormtr.o a - zheev.o a - lsame.o a - zlanhe.o a - zlascl.o a - zhetrd.o a - zungtr.o a - zsteqr.o a - zlassq.o a - zlatrd.o a - zhetd2.o a - zungql.o a - zungqr.o a - zlasr.o a - zlaset.o a - zlacgv.o a - zlarfg.o a - zung2l.o a - zlarft.o a - zlarfb.o a - zung2r.o a - dlapy3.o a - zladiv.o a - zlarf.o a - dgesvd.o a - dgebrd.o a - dgebd2.o a - dlabrd.o a - dorgbr.o a - dbdsqr.o a - dgeqrf.o a - dormbr.o a - dgelqf.o a - dorglq.o a - dlas2.o a - dlasq1.o a - dlasv2.o a - dgelq2.o a - dorgl2.o a - dlasq2.o a - dormlq.o a - dlasq3.o a - dlasq4.o a - dlasq5.o a - dorml2.o a - dlasq6.o a - dgesv.o a - dgetrs.o a - dlaswp.o a - dgetrf.o a - dgetf2.o a - dsysv.o a - dsytrs.o a - dsytrf.o a - dlasyf.o a - dsytf2.o a - dgelsd.o a - dlalsd.o a - dlasdq.o a - dlasda.o a - dlalsa.o a - dlasd6.o a - dlals0.o a - dlasdt.o a - dlasd7.o a - dlasd8.o a - dlasd4.o a - dlasd5.o a - dgelsy.o a - dlaic1.o a - dtzrzf.o a - dormrz.o a - dlarzt.o a - dlarzb.o a - dlatrz.o a - dormr3.o a - dgeqp3.o a - dlarz.o a - dlaqps.o a - dlaqp2.o a - dspevx.o a - dsyevr.o a - dstegr.o a - dlarrv.o a - dlarre.o a - dlarrb.o a - dlar1v.o a - dlarrf.o a - dggev.o a - dhgeqz.o a - dgghrd.o a - dtgevc.o a - dggbak.o a - dggbal.o a - dlag2.o a - disnan.o a - dlaisnan.o a - dlarfp.o a - dstemr.o a - dlarra.o a - dlarrc.o a - dlarrd.o a - dlarrj.o a - dlarrk.o a - dlarrr.o a - dlaneg.o a - dlaqr0.o a - dlaqr1.o a - dlaqr2.o a - dlaqr3.o a - dlaqr4.o a - dlaqr5.o a - dlahr2.o a - dormhr.o a - dtrexc.o a - dlaexc.o a - dlasy2.o a - iparmq.o a - iladlc.o a - iladlr.o ranlib lapack.a mv lapack.a /usr/local/apps/amber/11-1.5/amber11/lib make[1]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/lapack' (cd blas && make install ) make[1]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/blas' cpp -traditional -P -DBINTRAJ dasum.f > _dasum.f cpp -traditional -P -DBINTRAJ daxpy.f > _daxpy.f cpp -traditional -P -DBINTRAJ dcabs1.f > _dcabs1.f cpp -traditional -P -DBINTRAJ dcopy.f > _dcopy.f cpp -traditional -P -DBINTRAJ ddot.f > _ddot.f cpp -traditional -P -DBINTRAJ dgbmv.f > _dgbmv.f cpp -traditional -P -DBINTRAJ dgemm.f > _dgemm.f cpp -traditional -P -DBINTRAJ dgemv.f > _dgemv.f gfortran -c -O3 -mtune=generic -o dasum.o _dasum.f gfortran -c -O3 -mtune=generic -o dcopy.o _dcopy.f gfortran -c -O3 -mtune=generic -o dgemm.o _dgemm.f gfortran -c -O3 -mtune=generic -o ddot.o _ddot.f gfortran -c -O3 -mtune=generic -o daxpy.o _daxpy.f gfortran -c -O3 -mtune=generic -o dgbmv.o _dgbmv.f gfortran -c -O3 -mtune=generic -o dgemv.o _dgemv.f gfortran -c -O3 -mtune=generic -o dcabs1.o _dcabs1.f cpp -traditional -P -DBINTRAJ dger.f > _dger.f gfortran -c -O3 -mtune=generic -o dger.o _dger.f cpp -traditional -P -DBINTRAJ dnrm2.f > _dnrm2.f cpp -traditional -P -DBINTRAJ drot.f > _drot.f cpp -traditional -P -DBINTRAJ drotg.f > _drotg.f gfortran -c -O3 -mtune=generic -o dnrm2.o _dnrm2.f cpp -traditional -P -DBINTRAJ dsbmv.f > _dsbmv.f gfortran -c -O3 -mtune=generic -o drot.o _drot.f gfortran -c -O3 -mtune=generic -o drotg.o _drotg.f gfortran -c -O3 -mtune=generic -o dsbmv.o _dsbmv.f cpp -traditional -P -DBINTRAJ dscal.f > _dscal.f cpp -traditional -P -DBINTRAJ dspmv.f > _dspmv.f gfortran -c -O3 -mtune=generic -o dscal.o _dscal.f cpp -traditional -P -DBINTRAJ dspr.f > _dspr.f cpp -traditional -P -DBINTRAJ dspr2.f > _dspr2.f gfortran -c -O3 -mtune=generic -o dspmv.o _dspmv.f gfortran -c -O3 -mtune=generic -o dspr.o _dspr.f gfortran -c -O3 -mtune=generic -o dspr2.o _dspr2.f cpp -traditional -P -DBINTRAJ dswap.f > _dswap.f gfortran -c -O3 -mtune=generic -o dswap.o _dswap.f cpp -traditional -P -DBINTRAJ dsymm.f > _dsymm.f gfortran -c -O3 -mtune=generic -o dsymm.o _dsymm.f cpp -traditional -P -DBINTRAJ dsymv.f > _dsymv.f gfortran -c -O3 -mtune=generic -o dsymv.o _dsymv.f cpp -traditional -P -DBINTRAJ dsyr.f > _dsyr.f cpp -traditional -P -DBINTRAJ dsyr2.f > _dsyr2.f gfortran -c -O3 -mtune=generic -o dsyr.o _dsyr.f cpp -traditional -P -DBINTRAJ dsyr2k.f > _dsyr2k.f gfortran -c -O3 -mtune=generic -o dsyr2.o _dsyr2.f cpp -traditional -P -DBINTRAJ dsyrk.f > _dsyrk.f gfortran -c -O3 -mtune=generic -o dsyr2k.o _dsyr2k.f gfortran -c -O3 -mtune=generic -o dsyrk.o _dsyrk.f cpp -traditional -P -DBINTRAJ dtbmv.f > _dtbmv.f cpp -traditional -P -DBINTRAJ dtbsv.f > _dtbsv.f gfortran -c -O3 -mtune=generic -o dtbmv.o _dtbmv.f gfortran -c -O3 -mtune=generic -o dtbsv.o _dtbsv.f cpp -traditional -P -DBINTRAJ dtpmv.f > _dtpmv.f cpp -traditional -P -DBINTRAJ dtpsv.f > _dtpsv.f gfortran -c -O3 -mtune=generic -o dtpmv.o _dtpmv.f gfortran -c -O3 -mtune=generic -o dtpsv.o _dtpsv.f cpp -traditional -P -DBINTRAJ dtrmm.f > _dtrmm.f gfortran -c -O3 -mtune=generic -o dtrmm.o _dtrmm.f cpp -traditional -P -DBINTRAJ dtrmv.f > _dtrmv.f gfortran -c -O3 -mtune=generic -o dtrmv.o _dtrmv.f cpp -traditional -P -DBINTRAJ dtrsm.f > _dtrsm.f gfortran -c -O3 -mtune=generic -o dtrsm.o _dtrsm.f cpp -traditional -P -DBINTRAJ dtrsv.f > _dtrsv.f gfortran -c -O3 -mtune=generic -o dtrsv.o _dtrsv.f cpp -traditional -P -DBINTRAJ dummy.f > _dummy.f cpp -traditional -P -DBINTRAJ dzasum.f > _dzasum.f gfortran -c -O3 -mtune=generic -o dummy.o _dummy.f gfortran -c -O3 -mtune=generic -o dzasum.o _dzasum.f cpp -traditional -P -DBINTRAJ dznrm2.f > _dznrm2.f gfortran -c -O3 -mtune=generic -o dznrm2.o _dznrm2.f cpp -traditional -P -DBINTRAJ idamax.f > _idamax.f gfortran -c -O3 -mtune=generic -o idamax.o _idamax.f cpp -traditional -P -DBINTRAJ isamax.f > _isamax.f gfortran -c -O3 -mtune=generic -o isamax.o _isamax.f cpp -traditional -P -DBINTRAJ lsame.f > _lsame.f cpp -traditional -P -DBINTRAJ xerbla.f > _xerbla.f gfortran -c -O3 -mtune=generic -o lsame.o _lsame.f gfortran -c -O3 -mtune=generic -o xerbla.o _xerbla.f cpp -traditional -P -DBINTRAJ scopy.f > _scopy.f cpp -traditional -P -DBINTRAJ sswap.f > _sswap.f gfortran -c -O3 -mtune=generic -o sswap.o _sswap.f gfortran -c -O3 -mtune=generic -o scopy.o _scopy.f cpp -traditional -P -DBINTRAJ sscal.f > _sscal.f cpp -traditional -P -DBINTRAJ sasum.f > _sasum.f cpp -traditional -P -DBINTRAJ snrm2.f > _snrm2.f gfortran -c -O3 -mtune=generic -o sscal.o _sscal.f gfortran -c -O3 -mtune=generic -o sasum.o _sasum.f gfortran -c -O3 -mtune=generic -o snrm2.o _snrm2.f cpp -traditional -P -DBINTRAJ sdot.f > _sdot.f cpp -traditional -P -DBINTRAJ ssyr2k.f > _ssyr2k.f gfortran -c -O3 -mtune=generic -o sdot.o _sdot.f cpp -traditional -P -DBINTRAJ saxpy.f > _saxpy.f cpp -traditional -P -DBINTRAJ sgemv.f > _sgemv.f cpp -traditional -P -DBINTRAJ ssyr2.f > _ssyr2.f gfortran -c -O3 -mtune=generic -o ssyr2k.o _ssyr2k.f gfortran -c -O3 -mtune=generic -o saxpy.o _saxpy.f cpp -traditional -P -DBINTRAJ ssymv.f > _ssymv.f gfortran -c -O3 -mtune=generic -o ssyr2.o _ssyr2.f gfortran -c -O3 -mtune=generic -o sgemv.o _sgemv.f gfortran -c -O3 -mtune=generic -o ssymv.o _ssymv.f cpp -traditional -P -DBINTRAJ sgemm.f > _sgemm.f gfortran -c -O3 -mtune=generic -o sgemm.o _sgemm.f cpp -traditional -P -DBINTRAJ strmm.f > _strmm.f gfortran -c -O3 -mtune=generic -o strmm.o _strmm.f cpp -traditional -P -DBINTRAJ strmv.f > _strmv.f gfortran -c -O3 -mtune=generic -o strmv.o _strmv.f cpp -traditional -P -DBINTRAJ sger.f > _sger.f cpp -traditional -P -DBINTRAJ zher2k.f > _zher2k.f cpp -traditional -P -DBINTRAJ zswap.f > _zswap.f gfortran -c -O3 -mtune=generic -o zher2k.o _zher2k.f gfortran -c -O3 -mtune=generic -o sger.o _sger.f gfortran -c -O3 -mtune=generic -o zswap.o _zswap.f cpp -traditional -P -DBINTRAJ zgemv.f > _zgemv.f gfortran -c -O3 -mtune=generic -o zgemv.o _zgemv.f cpp -traditional -P -DBINTRAJ zhemv.f > _zhemv.f gfortran -c -O3 -mtune=generic -o zhemv.o _zhemv.f cpp -traditional -P -DBINTRAJ zscal.f > _zscal.f gfortran -c -O3 -mtune=generic -o zscal.o _zscal.f cpp -traditional -P -DBINTRAJ zdotc.f > _zdotc.f gfortran -c -O3 -mtune=generic -o zdotc.o _zdotc.f cpp -traditional -P -DBINTRAJ zaxpy.f > _zaxpy.f cpp -traditional -P -DBINTRAJ zher2.f > _zher2.f gfortran -c -O3 -mtune=generic -o zaxpy.o _zaxpy.f gfortran -c -O3 -mtune=generic -o zher2.o _zher2.f cpp -traditional -P -DBINTRAJ zdscal.f > _zdscal.f cpp -traditional -P -DBINTRAJ ztrmv.f > _ztrmv.f gfortran -c -O3 -mtune=generic -o zdscal.o _zdscal.f gfortran -c -O3 -mtune=generic -o ztrmv.o _ztrmv.f cpp -traditional -P -DBINTRAJ zcopy.f > _zcopy.f cpp -traditional -P -DBINTRAJ ztrmm.f > _ztrmm.f gfortran -c -O3 -mtune=generic -o zcopy.o _zcopy.f cpp -traditional -P -DBINTRAJ zgemm.f > _zgemm.f gfortran -c -O3 -mtune=generic -o ztrmm.o _ztrmm.f gfortran -c -O3 -mtune=generic -o zgemm.o _zgemm.f cpp -traditional -P -DBINTRAJ zgerc.f > _zgerc.f gfortran -c -O3 -mtune=generic -o zgerc.o _zgerc.f ar rv blas.a dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dgbmv.o dgemm.o dgemv.o dger.o dnrm2.o drot.o drotg.o dsbmv.o dscal.o dspmv.o dspr.o dspr2.o dswap.o dsymm.o dsymv.o dsyr.o dsyr2.o dsyr2k.o dsyrk.o dtbmv.o dtbsv.o dtpmv.o dtpsv.o dtrmm.o dtrmv.o dtrsm.o dtrsv.o dummy.o dzasum.o dznrm2.o idamax.o isamax.o lsame.o xerbla.o scopy.o sswap.o sscal.o sasum.o snrm2.o sdot.o ssyr2k.o saxpy.o sgemv.o ssyr2.o ssymv.o sgemm.o strmm.o strmv.o sger.o zher2k.o zswap.o zgemv.o zhemv.o zscal.o zdotc.o zaxpy.o zher2.o zdscal.o ztrmv.o zcopy.o ztrmm.o zgemm.o zgerc.o ar: creating blas.a a - dasum.o a - daxpy.o a - dcabs1.o a - dcopy.o a - ddot.o a - dgbmv.o a - dgemm.o a - dgemv.o a - dger.o a - dnrm2.o a - drot.o a - drotg.o a - dsbmv.o a - dscal.o a - dspmv.o a - dspr.o a - dspr2.o a - dswap.o a - dsymm.o a - dsymv.o a - dsyr.o a - dsyr2.o a - dsyr2k.o a - dsyrk.o a - dtbmv.o a - dtbsv.o a - dtpmv.o a - dtpsv.o a - dtrmm.o a - dtrmv.o a - dtrsm.o a - dtrsv.o a - dummy.o a - dzasum.o a - dznrm2.o a - idamax.o a - isamax.o a - lsame.o a - xerbla.o a - scopy.o a - sswap.o a - sscal.o a - sasum.o a - snrm2.o a - sdot.o a - ssyr2k.o a - saxpy.o a - sgemv.o a - ssyr2.o a - ssymv.o a - sgemm.o a - strmm.o a - strmv.o a - sger.o a - zher2k.o a - zswap.o a - zgemv.o a - zhemv.o a - zscal.o a - zdotc.o a - zaxpy.o a - zher2.o a - zdscal.o a - ztrmv.o a - zcopy.o a - ztrmm.o a - zgemm.o a - zgerc.o ranlib blas.a mv blas.a /usr/local/apps/amber/11-1.5/amber11/lib make[1]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/blas' (cd c9x-complex && make skip ) make[1]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/c9x-complex' using built-in (C99) complex.h functionality make[1]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/c9x-complex' (cd etc && make install ) make[1]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/etc' cpp -traditional -P -DBINTRAJ ambpdb.f90 > _ambpdb.f90 cpp -traditional -P -DBINTRAJ forFIRSTtype.f90 > _forFIRSTtype.f90 cpp -traditional -P -DBINTRAJ forFIRSTbond.f90 > _forFIRSTbond.f90 cpp -traditional -P -DBINTRAJ forFIRSThbond.f90 > _forFIRSThbond.f90 cpp -traditional -P -DBINTRAJ forFIRSTteth.f90 > _forFIRSTteth.f90 cpp -traditional -P -DBINTRAJ forFIRSToutp.f90 > _forFIRSToutp.f90 cpp -traditional -P -DBINTRAJ forFIRSTsugar.f90 > _forFIRSTsugar.f90 cd ../lib && make sys2.a make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/lib' cpp -traditional -P -DBINTRAJ sys.f > _sys.f gfortran -c -ffree-form -O0 -o forFIRSThbond.o _forFIRSThbond.f90 gfortran -c -ffree-form -O0 -o forFIRSToutp.o _forFIRSToutp.f90 gfortran -c -ffree-form -O0 -o forFIRSTbond.o _forFIRSTbond.f90 gfortran -c -ffree-form -O0 -o ambpdb.o _ambpdb.f90 gfortran -c -ffree-form -O0 -o forFIRSTsugar.o _forFIRSTsugar.f90 gfortran -c -ffree-form -O0 -o forFIRSTteth.o _forFIRSTteth.f90 gfortran -c -ffree-form -O0 -o forFIRSTtype.o _forFIRSTtype.f90 gfortran -c -O0 -o sys.o _sys.f gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o wallclock.o wallclock.c cpp -traditional -P -DBINTRAJ random.f > _random.f cpp -traditional -P -DBINTRAJ veclib.f > _veclib.f gfortran -c -ffree-form -O0 -o random.o _random.f cpp -traditional -P -DBINTRAJ amopen.f > _amopen.f gfortran -c -ffree-form -O0 -o veclib.o _veclib.f gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o elsize.o elsize.c gfortran -c -O0 -o amopen.o _amopen.f gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o molsurf.o molsurf.c cpp -traditional -P -DBINTRAJ mexit.f > _mexit.f gfortran -c -O0 -o mexit.o _mexit.f cpp -traditional -P -DBINTRAJ add_pdb.f90 > _add_pdb.f90 cpp -traditional -P -DBINTRAJ lapack.f > _lapack.f cpp -traditional -P -DBINTRAJ nxtsec.f > _nxtsec.f gfortran -c -ffree-form -O0 -o add_pdb.o _add_pdb.f90 gfortran -c -O0 -o nxtsec.o _nxtsec.f gfortran -c -O0 -o lapack.o _lapack.f cpp -traditional -P -DBINTRAJ rgroup.f > _rgroup.f cpp -traditional -P -DBINTRAJ resp.f > _resp.f gfortran -c -O0 -o rgroup.o _rgroup.f gfortran -c -O0 -o resp.o _resp.f cpp -traditional -P -DBINTRAJ rfree.f > _rfree.f gfortran -c -O0 -o rfree.o _rfree.f gfortran -o calcpka calcpka.f90 ./py_setup.sh Using system python cpp -traditional -P -DBINTRAJ matinv.f > _matinv.f gfortran -c -O0 -o matinv.o _matinv.f gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o elsize elsize.o -lm ar rv sys2.a sys.o wallclock.o random.o veclib.o amopen.o mexit.o nxtsec.o rgroup.o rfree.o matinv.o ar: creating sys2.a a - sys.o a - wallclock.o a - random.o a - veclib.o a - amopen.o a - mexit.o a - nxtsec.o a - rgroup.o a - rfree.o a - matinv.o ranlib sys2.a make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/lib' gfortran -o add_pdb \ add_pdb.o ../lib/sys2.a gfortran -o ambpdb \ ambpdb.o forFIRSTtype.o forFIRSTbond.o forFIRSThbond.o forFIRSTteth.o forFIRSToutp.o forFIRSTsugar.o ../lib/sys2.a gfortran \ lapack.o resp.o -o resp gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o molsurf molsurf.o -lm /bin/mv ambpdb elsize molsurf add_pdb resp calcpka /usr/local/apps/amber/11-1.5/amber11/bin /bin/cp lmodprmtop process_mdout.perl process_minout.perl /usr/local/apps/amber/11-1.5/amber11/bin /bin/cp convert_charmm_lipid_builder_pdb_to_amber.x /usr/local/apps/amber/11-1.5/amber11/bin /bin/cp cpinutil softcore_setup.py extractFrcmod.py /usr/local/apps/amber/11-1.5/amber11/bin make[1]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/etc' (cd chamber && make install ) make[1]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/chamber' make chamber make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/chamber' cpp -traditional -P -DBINTRAJ psf_strings.f > _psf_strings.f cpp -traditional -P -DBINTRAJ cmap.f > _cmap.f gfortran -c -O3 -mtune=generic -ffree-form -o cmap.o _cmap.f gfortran -c -O3 -mtune=generic -ffree-form -o psf_strings.o _psf_strings.f cpp -traditional -P -DBINTRAJ psfprm.f > _psfprm.f gfortran -c -O3 -mtune=generic -ffree-form -o psfprm.o _psfprm.f cpp -traditional -P -DBINTRAJ molnt.f > _molnt.f cpp -traditional -P -DBINTRAJ sort.f > _sort.f gfortran -c -O3 -mtune=generic -ffree-form -o molnt.o _molnt.f gfortran -c -O3 -mtune=generic -ffree-form -o sort.o _sort.f cpp -traditional -P -DBINTRAJ mkexcl.f > _mkexcl.f gfortran -c -O3 -mtune=generic -ffree-form -o mkexcl.o _mkexcl.f cpp -traditional -P -DBINTRAJ write_prmtop.f > _write_prmtop.f cpp -traditional -P -DBINTRAJ gbradii.f > _gbradii.f gfortran -c -O3 -mtune=generic -ffree-form -o gbradii.o _gbradii.f gfortran -c -O3 -mtune=generic -ffree-form -o write_prmtop.o _write_prmtop.f cpp -traditional -P -DBINTRAJ main.f > _main.f gfortran -c -O3 -mtune=generic -ffree-form -o main.o _main.f gfortran -ffree-form -o chamber main.o psfprm.o psf_strings.o write_prmtop.o gbradii.o sort.o mkexcl.o cmap.o molnt.o \ make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/chamber' mv chamber /usr/local/apps/amber/11-1.5/amber11/bin make[1]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/chamber' (cd pbsa && make install ) make[1]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/pbsa' cpp -traditional -P -DBINTRAJ dsvdc.f > _dsvdc.f cpp -traditional -P -DBINTRAJ egb.f > _egb.f cpp -traditional -P -DBINTRAJ timer.f > _timer.f cpp -traditional -P -DBINTRAJ decomp.f > _decomp.f cpp -traditional -P -DBINTRAJ pb_nlsolver.f > _pb_nlsolver.f cpp -traditional -P -DBINTRAJ pb_lsolver.f > _pb_lsolver.f cpp -traditional -P -DBINTRAJ IIM.f > _IIM.f cpp -traditional -P -DBINTRAJ getcoor.f > _getcoor.f gfortran -c -O3 -mtune=generic -ffree-form -o egb.o _egb.f gfortran -c -O3 -mtune=generic -ffree-form -o dsvdc.o _dsvdc.f gfortran -c -O3 -mtune=generic -ffree-form -o timer.o _timer.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_nlsolver.o _pb_nlsolver.f gfortran -c -O3 -mtune=generic -ffree-form -o decomp.o _decomp.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_lsolver.o _pb_lsolver.f gfortran -c -O3 -mtune=generic -ffree-form -o getcoor.o _getcoor.f gfortran -c -O3 -mtune=generic -ffree-form -o IIM.o _IIM.f cpp -traditional -P -DBINTRAJ runmd.f > _runmd.f gfortran -c -O3 -mtune=generic -ffree-form -o runmd.o _runmd.f cpp -traditional -P -DBINTRAJ runmin.f > _runmin.f gfortran -c -O3 -mtune=generic -ffree-form -o runmin.o _runmin.f cpp -traditional -P -DBINTRAJ pb_mpfrc.f > _pb_mpfrc.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_mpfrc.o _pb_mpfrc.f cpp -traditional -P -DBINTRAJ ene.f > _ene.f gfortran -c -O3 -mtune=generic -ffree-form -o ene.o _ene.f cpp -traditional -P -DBINTRAJ locmem.f > _locmem.f gfortran -c -O3 -mtune=generic -ffree-form -o locmem.o _locmem.f cpp -traditional -P -DBINTRAJ myopen.f > _myopen.f gfortran -c -O3 -mtune=generic -ffree-form -o myopen.o _myopen.f cpp -traditional -P -DBINTRAJ rdparm.f > _rdparm.f gfortran -c -O3 -mtune=generic -ffree-form -o rdparm.o _rdparm.f cpp -traditional -P -DBINTRAJ rgroup.f > _rgroup.f gfortran -c -O3 -mtune=generic -ffree-form -o rgroup.o _rgroup.f cpp -traditional -P -DBINTRAJ rfree.f > _rfree.f gfortran -c -O3 -mtune=generic -ffree-form -o rfree.o _rfree.f cpp -traditional -P -DBINTRAJ debug.f > _debug.f gfortran -c -O3 -mtune=generic -ffree-form -o debug.o _debug.f cpp -traditional -P -DBINTRAJ coed20.f > _coed20.f gfortran -c -O3 -mtune=generic -ffree-form -o coed20.o _coed20.f cpp -traditional -P -DBINTRAJ indexg.f > _indexg.f gfortran -c -O3 -mtune=generic -ffree-form -o indexg.o _indexg.f cpp -traditional -P -DBINTRAJ irre32.f > _irre32.f gfortran -c -O3 -mtune=generic -ffree-form -o irre32.o _irre32.f cpp -traditional -P -DBINTRAJ phidev.f > _phidev.f gfortran -c -O3 -mtune=generic -ffree-form -o phidev.o _phidev.f cpp -traditional -P -DBINTRAJ project.f > _project.f gfortran -c -O3 -mtune=generic -ffree-form -o project.o _project.f cpp -traditional -P -DBINTRAJ qld.f > _qld.f gfortran -c -O3 -mtune=generic -ffree-form -o qld.o _qld.f cpp -traditional -P -DBINTRAJ coed6.f > _coed6.f gfortran -c -O3 -mtune=generic -ffree-form -o coed6.o _coed6.f cpp -traditional -P -DBINTRAJ irre31.f > _irre31.f gfortran -c -O3 -mtune=generic -ffree-form -o irre31.o _irre31.f cpp -traditional -P -DBINTRAJ miniop.f > _miniop.f gfortran -c -O3 -mtune=generic -ffree-form -o miniop.o _miniop.f cpp -traditional -P -DBINTRAJ prodis.f > _prodis.f cpp -traditional -P -DBINTRAJ qint.f > _qint.f gfortran -c -O3 -mtune=generic -ffree-form -o prodis.o _prodis.f gfortran -c -O3 -mtune=generic -ffree-form -o qint.o _qint.f cpp -traditional -P -DBINTRAJ wint.f > _wint.f cpp -traditional -P -DBINTRAJ transf.f > _transf.f gfortran -c -O3 -mtune=generic -ffree-form -o wint.o _wint.f gfortran -c -O3 -mtune=generic -ffree-form -o transf.o _transf.f cpp -traditional -P -DBINTRAJ curv.f > _curv.f gfortran -c -O3 -mtune=generic -ffree-form -o curv.o _curv.f cpp -traditional -P -DBINTRAJ GrToPr.f > _GrToPr.f cpp -traditional -P -DBINTRAJ jumps.f > _jumps.f gfortran -c -O3 -mtune=generic -ffree-form -o GrToPr.o _GrToPr.f gfortran -c -O3 -mtune=generic -ffree-form -o jumps.o _jumps.f cpp -traditional -P -DBINTRAJ regular.f > _regular.f gfortran -c -O3 -mtune=generic -ffree-form -o regular.o _regular.f cpp -traditional -P -DBINTRAJ ctime.f > _ctime.f cpp -traditional -P -DBINTRAJ gmres.f > _gmres.f gfortran -c -O3 -mtune=generic -ffree-form -o ctime.o _ctime.f gfortran -c -O3 -mtune=generic -ffree-form -o gmres.o _gmres.f cpp -traditional -P -DBINTRAJ daxpy.f > _daxpy.f gfortran -c -O3 -mtune=generic -ffree-form -o daxpy.o _daxpy.f cpp -traditional -P -DBINTRAJ ddot.f > _ddot.f cpp -traditional -P -DBINTRAJ dheqr.f > _dheqr.f gfortran -c -O3 -mtune=generic -ffree-form -o ddot.o _ddot.f gfortran -c -O3 -mtune=generic -ffree-form -o dheqr.o _dheqr.f cpp -traditional -P -DBINTRAJ dpigmr.f > _dpigmr.f gfortran -c -O3 -mtune=generic -ffree-form -o dpigmr.o _dpigmr.f cpp -traditional -P -DBINTRAJ dscal.f > _dscal.f gfortran -c -O3 -mtune=generic -ffree-form -o dscal.o _dscal.f cpp -traditional -P -DBINTRAJ dslui2.f > _dslui2.f gfortran -c -O3 -mtune=generic -ffree-form -o dslui2.o _dslui2.f cpp -traditional -P -DBINTRAJ dxlcal.f > _dxlcal.f gfortran -c -O3 -mtune=generic -ffree-form -o dxlcal.o _dxlcal.f cpp -traditional -P -DBINTRAJ dchkw.f > _dchkw.f gfortran -c -O3 -mtune=generic -ffree-form -o dchkw.o _dchkw.f cpp -traditional -P -DBINTRAJ dgmres.f > _dgmres.f cpp -traditional -P -DBINTRAJ dnrm2.f > _dnrm2.f gfortran -c -O3 -mtune=generic -ffree-form -o dgmres.o _dgmres.f cpp -traditional -P -DBINTRAJ drlcal.f > _drlcal.f gfortran -c -O3 -mtune=generic -ffree-form -o dnrm2.o _dnrm2.f gfortran -c -O3 -mtune=generic -ffree-form -o drlcal.o _drlcal.f _dnrm2.f:88.23: 10 ASSIGN 30 TO NEXT 1 Warning: Deleted feature: ASSIGN statement at (1) _dnrm2.f:95.19: 20 GO TO NEXT,(30, 50, 70, 110) 1 Warning: Deleted feature: Assigned GOTO statement at (1) _dnrm2.f:97.23: ASSIGN 50 TO NEXT 1 Warning: Deleted feature: ASSIGN statement at (1) _dnrm2.f:107.23: ASSIGN 70 TO NEXT 1 Warning: Deleted feature: ASSIGN statement at (1) _dnrm2.f:113.24: ASSIGN 110 TO NEXT 1 Warning: Deleted feature: ASSIGN statement at (1) cpp -traditional -P -DBINTRAJ dsilus.f > _dsilus.f gfortran -c -O3 -mtune=generic -ffree-form -o dsilus.o _dsilus.f cpp -traditional -P -DBINTRAJ dslui.f > _dslui.f gfortran -c -O3 -mtune=generic -ffree-form -o dslui.o _dslui.f cpp -traditional -P -DBINTRAJ isdgmr.f > _isdgmr.f cpp -traditional -P -DBINTRAJ dcopy.f > _dcopy.f gfortran -c -O3 -mtune=generic -ffree-form -o isdgmr.o _isdgmr.f cpp -traditional -P -DBINTRAJ dhels.f > _dhels.f gfortran -c -O3 -mtune=generic -ffree-form -o dcopy.o _dcopy.f cpp -traditional -P -DBINTRAJ dorth.f > _dorth.f gfortran -c -O3 -mtune=generic -ffree-form -o dhels.o _dhels.f gfortran -c -O3 -mtune=generic -ffree-form -o dorth.o _dorth.f cpp -traditional -P -DBINTRAJ ds2y.f > _ds2y.f gfortran -c -O3 -mtune=generic -ffree-form -o ds2y.o _ds2y.f cpp -traditional -P -DBINTRAJ dslugm.f > _dslugm.f cpp -traditional -P -DBINTRAJ dsmv.f > _dsmv.f gfortran -c -O3 -mtune=generic -ffree-form -o dslugm.o _dslugm.f gfortran -c -O3 -mtune=generic -ffree-form -o dsmv.o _dsmv.f cpp -traditional -P -DBINTRAJ qs2i1d.f > _qs2i1d.f gfortran -c -O3 -mtune=generic -ffree-form -o qs2i1d.o _qs2i1d.f cpp -traditional -P -DBINTRAJ d1mach.f > _d1mach.f gfortran -c -O3 -mtune=generic -ffree-form -o d1mach.o _d1mach.f cpp -traditional -P -DBINTRAJ fdump.f > _fdump.f gfortran -c -O3 -mtune=generic -ffree-form -o fdump.o _fdump.f cpp -traditional -P -DBINTRAJ i1mach.f > _i1mach.f cpp -traditional -P -DBINTRAJ j4save.f > _j4save.f cpp -traditional -P -DBINTRAJ xercnt.f > _xercnt.f gfortran -c -O3 -mtune=generic -ffree-form -o i1mach.o _i1mach.f gfortran -c -O3 -mtune=generic -ffree-form -o j4save.o _j4save.f cpp -traditional -P -DBINTRAJ xerhlt.f > _xerhlt.f gfortran -c -O3 -mtune=generic -ffree-form -o xercnt.o _xercnt.f gfortran -c -O3 -mtune=generic -ffree-form -o xerhlt.o _xerhlt.f cpp -traditional -P -DBINTRAJ xermsg.f > _xermsg.f cpp -traditional -P -DBINTRAJ xerprn.f > _xerprn.f cpp -traditional -P -DBINTRAJ xersve.f > _xersve.f cpp -traditional -P -DBINTRAJ xgetua.f > _xgetua.f gfortran -c -O3 -mtune=generic -ffree-form -o xermsg.o _xermsg.f gfortran -c -O3 -mtune=generic -ffree-form -o xersve.o _xersve.f cpp -traditional -P -DBINTRAJ amg.f > _amg.f gfortran -c -O3 -mtune=generic -ffree-form -o xerprn.o _xerprn.f gfortran -c -O3 -mtune=generic -ffree-form -o xgetua.o _xgetua.f gfortran -c -O3 -mtune=generic -ffree-form -o amg.o _amg.f cpp -traditional -P -DBINTRAJ aux1r5.f > _aux1r5.f gfortran -c -O3 -mtune=generic -ffree-form -o aux1r5.o _aux1r5.f cpp -traditional -P -DBINTRAJ amg1r5.f > _amg1r5.f gfortran -c -O3 -mtune=generic -ffree-form -o amg1r5.o _amg1r5.f cpp -traditional -P -DBINTRAJ bicg.f > _bicg.f cpp -traditional -P -DBINTRAJ dbcg.f > _dbcg.f gfortran -c -O3 -mtune=generic -ffree-form -o bicg.o _bicg.f gfortran -c -O3 -mtune=generic -ffree-form -o dbcg.o _dbcg.f cpp -traditional -P -DBINTRAJ dslui4.f > _dslui4.f gfortran -c -O3 -mtune=generic -ffree-form -o dslui4.o _dslui4.f _amg1r5.f:1204.16: ifg,a(jtrst),time,ndjtr,ium,mdjtr) 1 Warning: Type mismatch in argument 'jtr' at (1); passed REAL(8) to INTEGER(4) _amg1r5.f:1217.58: call pcol(k-1,ierr,ia,ja,iw,imin,imax,imaxw,icg,ifg,u(irst), & 1 Warning: Type mismatch in argument 'ir' at (1); passed REAL(8) to INTEGER(4) _amg1r5.f:1224.26: imaxw,ifg,icg,u(irst),time,ierr,irow0,ncolx, & 1 Warning: Type mismatch in argument 'ncolor' at (1); passed REAL(8) to INTEGER(4) _amg1r5.f:1232.16: ifg,u(irst),nstcol,ncolx,time,nda,ndja,ium, & 1 Warning: Type mismatch in argument 'ncolor' at (1); passed REAL(8) to INTEGER(4) _amg1r5.f:3029.45: ja(jlo),a(jlo),f(ilo),u(ilo),nsp,a(jhi+1),a(jhi+1), & 1 Warning: Type mismatch in argument 'isp' at (1); passed REAL(8) to INTEGER(4) _amg1r5.f:3095.45: ja(jlo),a(jlo),f(ilo),u(ilo),nsp,a(jhi+1),a(jhi+1), & 1 Warning: Type mismatch in argument 'isp' at (1); passed REAL(8) to INTEGER(4) cpp -traditional -P -DBINTRAJ dsluti.f > _dsluti.f gfortran -c -O3 -mtune=generic -ffree-form -o dsluti.o _dsluti.f cpp -traditional -P -DBINTRAJ dsmtv.f > _dsmtv.f gfortran -c -O3 -mtune=generic -ffree-form -o dsmtv.o _dsmtv.f cpp -traditional -P -DBINTRAJ dslubc.f > _dslubc.f gfortran -c -O3 -mtune=generic -ffree-form -o dslubc.o _dslubc.f cpp -traditional -P -DBINTRAJ isdbcg.f > _isdbcg.f gfortran -c -O3 -mtune=generic -ffree-form -o isdbcg.o _isdbcg.f cpp -traditional -P -DBINTRAJ svdcmp.f > _svdcmp.f gfortran -c -O3 -mtune=generic -ffree-form -o svdcmp.o _svdcmp.f cpp -traditional -P -DBINTRAJ svbksb.f > _svbksb.f _svdcmp.f:240.56: if(its.eq.30) pause 'no convergence in svdcmp' 1 Warning: Deleted feature: PAUSE statement at (1) cpp -traditional -P -DBINTRAJ pythag.f > _pythag.f gfortran -c -O3 -mtune=generic -ffree-form -o svbksb.o _svbksb.f gfortran -c -O3 -mtune=generic -ffree-form -o pythag.o _pythag.f cd ../lib && make nxtsec.o random.o cd ../lapack && make install make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/lib' make[2]: `nxtsec.o' is up to date. make[2]: `random.o' is up to date. make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/lib' cpp -traditional -P -DBINTRAJ pbsa.f > _pbsa.f cpp -traditional -P -DBINTRAJ sa_driver.f > _sa_driver.f make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/lapack' ar rv lapack.a dsyev.o dsygv.o dlansy.o dsytrd.o dorgtr.o dsteqr.o dsterf.o dlascl.o dlamch.o ilaenv.o dlassq.o dsytd2.o dlatrd.o dorgql.o dorgqr.o dlasrt.o dlaset.o dlanst.o dlaev2.o dlasr.o dlapy2.o dlartg.o dlae2.o dorg2r.o dlarft.o dlarfb.o dorg2l.o dlarfg.o dlarf.o dspev.o dlansp.o dsptrd.o dopgtr.o dppsv.o dspsv.o dgeev.o dsptrs.o dsptrf.o dpptrs.o dpptrf.o dgebak.o dtrevc.o dlacpy.o dhseqr.o dorghr.o dgehrd.o dgebal.o dlange.o dlabad.o dlahqr.o dlarfx.o dlanhs.o dlaln2.o dgehd2.o dlahrd.o dlanv2.o dladiv.o dgerq2.o dorm2r.o dlarnv.o dgeqr2.o dlaruv.o dspevd.o dstedc.o dopmtr.o dlaed0.o dlaed1.o dlaed7.o dlaeda.o dlaed8.o dlaed9.o dlamrg.o dlaed2.o dlaed3.o dpotrs.o dpotrf.o dsygst.o dpotf2.o dsygs2.o dposv.o dlaebz.o dlagtf.o dlagts.o dormqr.o dormql.o dorm2l.o dlaed4.o dlaed5.o dlaed6.o ieeeck.o dsyevx.o dsyevd.o dstebz.o dstein.o dormtr.o zheev.o lsame.o zlanhe.o zlascl.o zhetrd.o zungtr.o zsteqr.o zlassq.o zlatrd.o zhetd2.o zungql.o zungqr.o zlasr.o zlaset.o zlacgv.o zlarfg.o zung2l.o zlarft.o zlarfb.o zung2r.o dlapy3.o zladiv.o zlarf.o dgesvd.o dgebrd.o dgebd2.o dlabrd.o dorgbr.o dbdsqr.o dgeqrf.o dormbr.o dgelqf.o dorglq.o dlas2.o dlasq1.o dlasv2.o dgelq2.o dorgl2.o dlasq2.o dormlq.o dlasq3.o dlasq4.o dlasq5.o dorml2.o dlasq6.o dgesv.o dgetrs.o dlaswp.o dgetrf.o dgetf2.o dsysv.o dsytrs.o dsytrf.o dlasyf.o dsytf2.o dgelsd.o dlalsd.o dlasdq.o dlasda.o dlalsa.o dlasd6.o dlals0.o dlasdt.o dlasd7.o dlasd8.o dlasd4.o dlasd5.o dgelsy.o dlaic1.o dtzrzf.o dormrz.o dlarzt.o dlarzb.o dlatrz.o dormr3.o dgeqp3.o dlarz.o dlaqps.o dlaqp2.o dspevx.o dsyevr.o dstegr.o dlarrv.o dlarre.o dlarrb.o dlar1v.o dlarrf.o dggev.o dhgeqz.o dgghrd.o dtgevc.o dggbak.o dggbal.o dlag2.o disnan.o dlaisnan.o dlarfp.o dstemr.o dlarra.o dlarrc.o dlarrd.o dlarrj.o dlarrk.o dlarrr.o dlaneg.o dlaqr0.o dlaqr1.o dlaqr2.o dlaqr3.o dlaqr4.o dlaqr5.o dlahr2.o dormhr.o dtrexc.o dlaexc.o dlasy2.o iparmq.o iladlc.o iladlr.o gfortran -c -O3 -mtune=generic -ffree-form -o pbsa.o _pbsa.f ar: creating lapack.a gfortran -c -O3 -mtune=generic -ffree-form -o sa_driver.o _sa_driver.f cpp -traditional -P -DBINTRAJ pb_iimdrv.f > _pb_iimdrv.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_iimdrv.o _pb_iimdrv.f a - dsyev.o a - dsygv.o a - dlansy.o a - dsytrd.o a - dorgtr.o a - dsteqr.o a - dsterf.o a - dlascl.o a - dlamch.o a - ilaenv.o a - dlassq.o a - dsytd2.o a - dlatrd.o a - dorgql.o a - dorgqr.o a - dlasrt.o a - dlaset.o a - dlanst.o a - dlaev2.o a - dlasr.o a - dlapy2.o a - dlartg.o a - dlae2.o a - dorg2r.o a - dlarft.o a - dlarfb.o a - dorg2l.o a - dlarfg.o a - dlarf.o a - dspev.o a - dlansp.o a - dsptrd.o a - dopgtr.o a - dppsv.o a - dspsv.o a - dgeev.o a - dsptrs.o a - dsptrf.o a - dpptrs.o a - dpptrf.o a - dgebak.o a - dtrevc.o a - dlacpy.o a - dhseqr.o a - dorghr.o a - dgehrd.o a - dgebal.o a - dlange.o a - dlabad.o a - dlahqr.o a - dlarfx.o a - dlanhs.o a - dlaln2.o a - dgehd2.o a - dlahrd.o a - dlanv2.o a - dladiv.o a - dgerq2.o a - dorm2r.o a - dlarnv.o a - dgeqr2.o a - dlaruv.o a - dspevd.o a - dstedc.o a - dopmtr.o a - dlaed0.o a - dlaed1.o a - dlaed7.o a - dlaeda.o a - dlaed8.o a - dlaed9.o a - dlamrg.o a - dlaed2.o a - dlaed3.o a - dpotrs.o a - dpotrf.o a - dsygst.o a - dpotf2.o a - dsygs2.o a - dposv.o a - dlaebz.o a - dlagtf.o a - dlagts.o a - dormqr.o a - dormql.o a - dorm2l.o a - dlaed4.o a - dlaed5.o a - dlaed6.o a - ieeeck.o a - dsyevx.o a - dsyevd.o a - dstebz.o a - dstein.o a - dormtr.o a - zheev.o a - lsame.o a - zlanhe.o a - zlascl.o a - zhetrd.o a - zungtr.o a - zsteqr.o a - zlassq.o a - zlatrd.o a - zhetd2.o a - zungql.o a - zungqr.o a - zlasr.o a - zlaset.o a - zlacgv.o a - zlarfg.o a - zung2l.o a - zlarft.o a - zlarfb.o a - zung2r.o a - dlapy3.o a - zladiv.o a - zlarf.o a - dgesvd.o a - dgebrd.o a - dgebd2.o a - dlabrd.o a - dorgbr.o a - dbdsqr.o a - dgeqrf.o a - dormbr.o a - dgelqf.o a - dorglq.o a - dlas2.o a - dlasq1.o a - dlasv2.o a - dgelq2.o a - dorgl2.o a - dlasq2.o a - dormlq.o a - dlasq3.o a - dlasq4.o a - dlasq5.o a - dorml2.o a - dlasq6.o a - dgesv.o a - dgetrs.o a - dlaswp.o a - dgetrf.o a - dgetf2.o a - dsysv.o a - dsytrs.o a - dsytrf.o a - dlasyf.o a - dsytf2.o a - dgelsd.o a - dlalsd.o a - dlasdq.o a - dlasda.o a - dlalsa.o a - dlasd6.o a - dlals0.o a - dlasdt.o a - dlasd7.o a - dlasd8.o a - dlasd4.o a - dlasd5.o a - dgelsy.o a - dlaic1.o a - dtzrzf.o a - dormrz.o a - dlarzt.o a - dlarzb.o a - dlatrz.o a - dormr3.o a - dgeqp3.o a - dlarz.o a - dlaqps.o a - dlaqp2.o a - dspevx.o a - dsyevr.o a - dstegr.o a - dlarrv.o a - dlarre.o a - dlarrb.o a - dlar1v.o a - dlarrf.o a - dggev.o a - dhgeqz.o a - dgghrd.o a - dtgevc.o a - dggbak.o a - dggbal.o a - dlag2.o a - disnan.o a - dlaisnan.o a - dlarfp.o a - dstemr.o a - dlarra.o a - dlarrc.o a - dlarrd.o a - dlarrj.o a - dlarrk.o a - dlarrr.o a - dlaneg.o a - dlaqr0.o a - dlaqr1.o a - dlaqr2.o a - dlaqr3.o a - dlaqr4.o a - dlaqr5.o a - dlahr2.o a - dormhr.o a - dtrexc.o a - dlaexc.o a - dlasy2.o a - iparmq.o a - iladlc.o a - iladlr.o ranlib lapack.a mv lapack.a /usr/local/apps/amber/11-1.5/amber11/lib make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/lapack' cd ../blas && make install make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/blas' ar rv blas.a dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dgbmv.o dgemm.o dgemv.o dger.o dnrm2.o drot.o drotg.o dsbmv.o dscal.o dspmv.o dspr.o dspr2.o dswap.o dsymm.o dsymv.o dsyr.o dsyr2.o dsyr2k.o dsyrk.o dtbmv.o dtbsv.o dtpmv.o dtpsv.o dtrmm.o dtrmv.o dtrsm.o dtrsv.o dummy.o dzasum.o dznrm2.o idamax.o isamax.o lsame.o xerbla.o scopy.o sswap.o sscal.o sasum.o snrm2.o sdot.o ssyr2k.o saxpy.o sgemv.o ssyr2.o ssymv.o sgemm.o strmm.o strmv.o sger.o zher2k.o zswap.o zgemv.o zhemv.o zscal.o zdotc.o zaxpy.o zher2.o zdscal.o ztrmv.o zcopy.o ztrmm.o zgemm.o zgerc.o ar: creating blas.a a - dasum.o a - daxpy.o a - dcabs1.o a - dcopy.o a - ddot.o a - dgbmv.o a - dgemm.o a - dgemv.o a - dger.o a - dnrm2.o a - drot.o a - drotg.o a - dsbmv.o a - dscal.o a - dspmv.o a - dspr.o a - dspr2.o a - dswap.o a - dsymm.o a - dsymv.o a - dsyr.o a - dsyr2.o a - dsyr2k.o a - dsyrk.o a - dtbmv.o a - dtbsv.o a - dtpmv.o a - dtpsv.o a - dtrmm.o a - dtrmv.o a - dtrsm.o a - dtrsv.o a - dummy.o a - dzasum.o a - dznrm2.o a - idamax.o a - isamax.o a - lsame.o a - xerbla.o a - scopy.o a - sswap.o a - sscal.o a - sasum.o a - snrm2.o a - sdot.o a - ssyr2k.o a - saxpy.o a - sgemv.o a - ssyr2.o a - ssymv.o a - sgemm.o a - strmm.o a - strmv.o a - sger.o a - zher2k.o a - zswap.o a - zgemv.o a - zhemv.o a - zscal.o a - zdotc.o a - zaxpy.o a - zher2.o a - zdscal.o a - ztrmv.o a - zcopy.o a - ztrmm.o a - zgemm.o a - zgerc.o ranlib blas.a mv blas.a /usr/local/apps/amber/11-1.5/amber11/lib make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/blas' cd ../arpack && make install make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/arpack' ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o ar: creating arpack.a a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - dsarpack.o a - wallclock.o ranlib arpack.a mv arpack.a /usr/local/apps/amber/11-1.5/amber11/lib make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/arpack' cpp -traditional -P -DBINTRAJ pb_fddrv.f > _pb_fddrv.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_fddrv.o _pb_fddrv.f cpp -traditional -P -DBINTRAJ pb_force.f > _pb_force.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_force.o _pb_force.f cpp -traditional -P -DBINTRAJ np_force.f > _np_force.f cpp -traditional -P -DBINTRAJ pb_exmol.f > _pb_exmol.f cpp -traditional -P -DBINTRAJ pb_direct.f > _pb_direct.f cpp -traditional -P -DBINTRAJ pb_list.f > _pb_list.f cpp -traditional -P -DBINTRAJ problem.f > _problem.f cpp -traditional -P -DBINTRAJ pb_chkfrc.f > _pb_chkfrc.f gfortran -c -O3 -mtune=generic -ffree-form -o problem.o _problem.f gfortran -c -O3 -mtune=generic -ffree-form -o np_force.o _np_force.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_chkfrc.o _pb_chkfrc.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_list.o _pb_list.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_exmol.o _pb_exmol.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_direct.o _pb_direct.f cpp -traditional -P -DBINTRAJ pb_read.f > _pb_read.f cpp -traditional -P -DBINTRAJ pb_write.f > _pb_write.f cpp -traditional -P -DBINTRAJ force.f > _force.f cpp -traditional -P -DBINTRAJ pb_init.f > _pb_init.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_read.o _pb_read.f gfortran -c -O3 -mtune=generic -ffree-form -o force.o _force.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_write.o _pb_write.f gfortran -c -O0 -ffree-form -o pb_init.o _pb_init.f gfortran -ffree-form -o pbsa dsvdc.o pbsa.o pb_read.o pb_write.o getcoor.o runmd.o runmin.o force.o pb_init.o sa_driver.o np_force.o pb_force.o pb_fddrv.o pb_iimdrv.o pb_nlsolver.o pb_exmol.o pb_mpfrc.o pb_direct.o pb_list.o timer.o egb.o ene.o locmem.o myopen.o rdparm.o pb_lsolver.o decomp.o rgroup.o rfree.o debug.o coed20.o indexg.o irre32.o phidev.o project.o qld.o coed6.o irre31.o miniop.o prodis.o qint.o wint.o transf.o curv.o GrToPr.o jumps.o problem.o IIM.o regular.o ctime.o gmres.o daxpy.o ddot.o dheqr.o dpigmr.o dscal.o dslui2.o dxlcal.o dchkw.o dgmres.o dnrm2.o drlcal.o dsilus.o dslui.o isdgmr.o dcopy.o dhels.o dorth.o ds2y.o dslugm.o dsmv.o qs2i1d.o d1mach.o fdump.o i1mach.o j4save.o xercnt.o xerhlt.o xermsg.o xerprn.o xersve.o xgetua.o amg.o aux1r5.o amg1r5.o bicg.o dbcg.o dslui4.o dsluti.o dsmtv.o dslubc.o isdbcg.o pb_chkfrc.o svdcmp.o svbksb.o pythag.o \ ../lib/nxtsec.o ../lib/random.o \ /usr/local/apps/amber/11-1.5/amber11/lib/arpack.a /usr/local/apps/amber/11-1.5/amber11/lib/lapack.a /usr/local/apps/amber/11-1.5/amber11/lib/blas.a /bin/mv pbsa /usr/local/apps/amber/11-1.5/amber11/bin make[1]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/pbsa' (cd antechamber && make install ) make[1]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/antechamber' gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o am1bcc.o am1bcc.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o acdoctor.o acdoctor.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o antechamber.o antechamber.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o atomtype.o atomtype.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o bondtype.o bondtype.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ncsu-penalties.o ncsu-penalties.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o charmmgen.o charmmgen.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o crdgrow.o crdgrow.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o database.o database.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o espgen.o espgen.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o parmcal.o parmcal.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o parmchk.o parmchk.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o prepgen.o prepgen.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o residuegen.o residuegen.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o respgen.o respgen.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o translate.o translate.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o top2ff.o top2ff.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o top2mol2.o top2mol2.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ am1bcc.o -lm -o am1bcc gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ atomtype.o -lm -o atomtype gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ ncsu-penalties.o bondtype.o -lm -o bondtype gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ charmmgen.o -lm -o charmmgen gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ crdgrow.o -lm -o crdgrow gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ database.o -lm -o database gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ espgen.o -o espgen gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ parmcal.o -lm -o parmcal gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ residuegen.o -lm -o residuegen gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ respgen.o -lm -o respgen gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ top2ff.o -lm -o top2ff gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ top2mol2.o -lm -o top2mol2 gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ acdoctor.o -lm -o acdoctor gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ prepgen.o -lm -o prepgen gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ antechamber.o -lm -o antechamber gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ parmchk.o -lm -o parmchk gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ translate.o -lm -o translate mv -f am1bcc acdoctor antechamber atomtype bondtype charmmgen crdgrow database espgen parmcal parmchk prepgen residuegen respgen translate top2ff top2mol2 /usr/local/apps/amber/11-1.5/amber11/bin make[1]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/antechamber' (cd sqm && make install ) make[1]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/sqm' cpp -traditional -P -DBINTRAJ constants.f > _constants.f cpp -traditional -P -DBINTRAJ findmask.f > _findmask.f gcc -c -DSQM -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o xminC.o ../sff/xminC.c cpp -traditional -P -DBINTRAJ amopen.f > _amopen.f cpp -traditional -P -DBINTRAJ mexit.f > _mexit.f cpp -traditional -P -DBINTRAJ assert.f > _assert.f cpp -traditional -P -DBINTRAJ timer_dummy.f > _timer_dummy.f cpp -traditional -P -DBINTRAJ nmlsrc.f > _nmlsrc.f gfortran -c -O3 -mtune=generic -ffree-form -o constants.o _constants.f gfortran -c -O0 -ffree-form -o amopen.o _amopen.f gfortran -c -O0 -ffree-form -o assert.o _assert.f gfortran -c -O0 -ffree-form -o findmask.o _findmask.f gfortran -c -O0 -ffree-form -o mexit.o _mexit.f gfortran -c -O0 -ffree-form -o timer_dummy.o _timer_dummy.f gfortran -c -O0 -ffree-form -o nmlsrc.o _nmlsrc.f cpp -traditional -P -DBINTRAJ qm2_dihed.f > _qm2_dihed.f cpp -traditional -P -DBINTRAJ qm2_smallest_number.f > _qm2_smallest_number.f cpp -traditional -P -DBINTRAJ qm2_dftb_gamma.f > _qm2_dftb_gamma.f cpp -traditional -P -DBINTRAJ qm2_dftb_gammamat.f > _qm2_dftb_gammamat.f cpp -traditional -P -DBINTRAJ qm2_dftb_self.f > _qm2_dftb_self.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dihed.o _qm2_dihed.f cpp -traditional -P -DBINTRAJ qm2_dftb_slktrafo.f > _qm2_dftb_slktrafo.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_gamma.o _qm2_dftb_gamma.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_gammamat.o _qm2_dftb_gammamat.f gfortran -c -O0 -ffree-form -o qm2_smallest_number.o _qm2_smallest_number.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_self.o _qm2_dftb_self.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_slktrafo.o _qm2_dftb_slktrafo.f cd ../lapack; make install make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/lapack' ar rv lapack.a dsyev.o dsygv.o dlansy.o dsytrd.o dorgtr.o dsteqr.o dsterf.o dlascl.o dlamch.o ilaenv.o dlassq.o dsytd2.o dlatrd.o dorgql.o dorgqr.o dlasrt.o dlaset.o dlanst.o dlaev2.o dlasr.o dlapy2.o dlartg.o dlae2.o dorg2r.o dlarft.o dlarfb.o dorg2l.o dlarfg.o dlarf.o dspev.o dlansp.o dsptrd.o dopgtr.o dppsv.o dspsv.o dgeev.o dsptrs.o dsptrf.o dpptrs.o dpptrf.o dgebak.o dtrevc.o dlacpy.o dhseqr.o dorghr.o dgehrd.o dgebal.o dlange.o dlabad.o dlahqr.o dlarfx.o dlanhs.o dlaln2.o dgehd2.o dlahrd.o dlanv2.o dladiv.o dgerq2.o dorm2r.o dlarnv.o dgeqr2.o dlaruv.o dspevd.o dstedc.o dopmtr.o dlaed0.o dlaed1.o dlaed7.o dlaeda.o dlaed8.o dlaed9.o dlamrg.o dlaed2.o dlaed3.o dpotrs.o dpotrf.o dsygst.o dpotf2.o dsygs2.o dposv.o dlaebz.o dlagtf.o dlagts.o dormqr.o dormql.o dorm2l.o dlaed4.o dlaed5.o dlaed6.o ieeeck.o dsyevx.o dsyevd.o dstebz.o dstein.o dormtr.o zheev.o lsame.o zlanhe.o zlascl.o zhetrd.o zungtr.o zsteqr.o zlassq.o zlatrd.o zhetd2.o zungql.o zungqr.o zlasr.o zlaset.o zlacgv.o zlarfg.o zung2l.o zlarft.o zlarfb.o zung2r.o dlapy3.o zladiv.o zlarf.o dgesvd.o dgebrd.o dgebd2.o dlabrd.o dorgbr.o dbdsqr.o dgeqrf.o dormbr.o dgelqf.o dorglq.o dlas2.o dlasq1.o dlasv2.o dgelq2.o dorgl2.o dlasq2.o dormlq.o dlasq3.o dlasq4.o dlasq5.o dorml2.o dlasq6.o dgesv.o dgetrs.o dlaswp.o dgetrf.o dgetf2.o dsysv.o dsytrs.o dsytrf.o dlasyf.o dsytf2.o dgelsd.o dlalsd.o dlasdq.o dlasda.o dlalsa.o dlasd6.o dlals0.o dlasdt.o dlasd7.o dlasd8.o dlasd4.o dlasd5.o dgelsy.o dlaic1.o dtzrzf.o dormrz.o dlarzt.o dlarzb.o dlatrz.o dormr3.o dgeqp3.o dlarz.o dlaqps.o dlaqp2.o dspevx.o dsyevr.o dstegr.o dlarrv.o dlarre.o dlarrb.o dlar1v.o dlarrf.o dggev.o dhgeqz.o dgghrd.o dtgevc.o dggbak.o dggbal.o dlag2.o disnan.o dlaisnan.o dlarfp.o dstemr.o dlarra.o dlarrc.o dlarrd.o dlarrj.o dlarrk.o dlarrr.o dlaneg.o dlaqr0.o dlaqr1.o dlaqr2.o dlaqr3.o dlaqr4.o dlaqr5.o dlahr2.o dormhr.o dtrexc.o dlaexc.o dlasy2.o iparmq.o iladlc.o iladlr.o ar: creating lapack.a cd ../lib; make sys.a make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/lib' ar rv sys.a sys.o wallclock.o random.o veclib.o ar: creating sys.a a - sys.o a - wallclock.o a - random.o a - veclib.o ranlib sys.a make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/lib' cpp -traditional -P -DBINTRAJ qmmm_qmtheorymodule.f > _qmmm_qmtheorymodule.f cpp -traditional -P -DBINTRAJ xmin.f > _xmin.f a - dsyev.o a - dsygv.o a - dlansy.o a - dsytrd.o a - dorgtr.o a - dsteqr.o a - dsterf.o a - dlascl.o a - dlamch.o a - ilaenv.o a - dlassq.o a - dsytd2.o a - dlatrd.o a - dorgql.o a - dorgqr.o a - dlasrt.o a - dlaset.o a - dlanst.o a - dlaev2.o a - dlasr.o a - dlapy2.o a - dlartg.o a - dlae2.o a - dorg2r.o a - dlarft.o a - dlarfb.o a - dorg2l.o a - dlarfg.o a - dlarf.o a - dspev.o a - dlansp.o a - dsptrd.o a - dopgtr.o a - dppsv.o a - dspsv.o a - dgeev.o a - dsptrs.o a - dsptrf.o a - dpptrs.o a - dpptrf.o a - dgebak.o a - dtrevc.o a - dlacpy.o a - dhseqr.o a - dorghr.o a - dgehrd.o a - dgebal.o a - dlange.o a - dlabad.o a - dlahqr.o a - dlarfx.o a - dlanhs.o a - dlaln2.o a - dgehd2.o a - dlahrd.o a - dlanv2.o a - dladiv.o a - dgerq2.o a - dorm2r.o a - dlarnv.o a - dgeqr2.o a - dlaruv.o a - dspevd.o a - dstedc.o a - dopmtr.o a - dlaed0.o a - dlaed1.o a - dlaed7.o a - dlaeda.o a - dlaed8.o a - dlaed9.o a - dlamrg.o a - dlaed2.o a - dlaed3.o a - dpotrs.o a - dpotrf.o a - dsygst.o a - dpotf2.o a - dsygs2.o a - dposv.o a - dlaebz.o a - dlagtf.o a - dlagts.o a - dormqr.o a - dormql.o a - dorm2l.o a - dlaed4.o a - dlaed5.o a - dlaed6.o a - ieeeck.o a - dsyevx.o a - dsyevd.o a - dstebz.o a - dstein.o a - dormtr.o a - zheev.o a - lsame.o a - zlanhe.o a - zlascl.o a - zhetrd.o a - zungtr.o a - zsteqr.o a - zlassq.o a - zlatrd.o a - zhetd2.o a - zungql.o a - zungqr.o a - zlasr.o a - zlaset.o a - zlacgv.o a - zlarfg.o a - zung2l.o a - zlarft.o a - zlarfb.o a - zung2r.o a - dlapy3.o a - zladiv.o a - zlarf.o a - dgesvd.o a - dgebrd.o a - dgebd2.o a - dlabrd.o a - dorgbr.o a - dbdsqr.o a - dgeqrf.o a - dormbr.o a - dgelqf.o a - dorglq.o a - dlas2.o a - dlasq1.o a - dlasv2.o a - dgelq2.o a - dorgl2.o a - dlasq2.o a - dormlq.o a - dlasq3.o a - dlasq4.o a - dlasq5.o a - dorml2.o a - dlasq6.o a - dgesv.o a - dgetrs.o a - dlaswp.o a - dgetrf.o a - dgetf2.o a - dsysv.o a - dsytrs.o a - dsytrf.o a - dlasyf.o a - dsytf2.o a - dgelsd.o a - dlalsd.o a - dlasdq.o a - dlasda.o a - dlalsa.o a - dlasd6.o a - dlals0.o a - dlasdt.o a - dlasd7.o a - dlasd8.o a - dlasd4.o a - dlasd5.o a - dgelsy.o a - dlaic1.o a - dtzrzf.o a - dormrz.o a - dlarzt.o a - dlarzb.o a - dlatrz.o a - dormr3.o a - dgeqp3.o a - dlarz.o a - dlaqps.o a - dlaqp2.o a - dspevx.o a - dsyevr.o a - dstegr.o a - dlarrv.o a - dlarre.o a - dlarrb.o a - dlar1v.o a - dlarrf.o a - dggev.o a - dhgeqz.o a - dgghrd.o a - dtgevc.o a - dggbak.o a - dggbal.o a - dlag2.o a - disnan.o a - dlaisnan.o a - dlarfp.o a - dstemr.o a - dlarra.o a - dlarrc.o a - dlarrd.o a - dlarrj.o a - dlarrk.o a - dlarrr.o a - dlaneg.o a - dlaqr0.o a - dlaqr1.o a - dlaqr2.o a - dlaqr3.o a - dlaqr4.o a - dlaqr5.o a - dlahr2.o a - dormhr.o a - dtrexc.o a - dlaexc.o a - dlasy2.o a - iparmq.o a - iladlc.o a - iladlr.o ranlib lapack.a gfortran -c -O0 -ffree-form -o qmmm_qmtheorymodule.o _qmmm_qmtheorymodule.f gfortran -c -O0 -ffree-form -o xmin.o _xmin.f mv lapack.a /usr/local/apps/amber/11-1.5/amber11/lib make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/lapack' cd ../blas; make install make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/blas' ar rv blas.a dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dgbmv.o dgemm.o dgemv.o dger.o dnrm2.o drot.o drotg.o dsbmv.o dscal.o dspmv.o dspr.o dspr2.o dswap.o dsymm.o dsymv.o dsyr.o dsyr2.o dsyr2k.o dsyrk.o dtbmv.o dtbsv.o dtpmv.o dtpsv.o dtrmm.o dtrmv.o dtrsm.o dtrsv.o dummy.o dzasum.o dznrm2.o idamax.o isamax.o lsame.o xerbla.o scopy.o sswap.o sscal.o sasum.o snrm2.o sdot.o ssyr2k.o saxpy.o sgemv.o ssyr2.o ssymv.o sgemm.o strmm.o strmv.o sger.o zher2k.o zswap.o zgemv.o zhemv.o zscal.o zdotc.o zaxpy.o zher2.o zdscal.o ztrmv.o zcopy.o ztrmm.o zgemm.o zgerc.o ar: creating blas.a a - dasum.o a - daxpy.o a - dcabs1.o a - dcopy.o a - ddot.o a - dgbmv.o a - dgemm.o a - dgemv.o a - dger.o a - dnrm2.o a - drot.o a - drotg.o a - dsbmv.o a - dscal.o a - dspmv.o a - dspr.o a - dspr2.o a - dswap.o a - dsymm.o a - dsymv.o a - dsyr.o a - dsyr2.o a - dsyr2k.o a - dsyrk.o a - dtbmv.o a - dtbsv.o a - dtpmv.o a - dtpsv.o a - dtrmm.o a - dtrmv.o a - dtrsm.o a - dtrsv.o a - dummy.o a - dzasum.o a - dznrm2.o a - idamax.o a - isamax.o a - lsame.o a - xerbla.o a - scopy.o a - sswap.o a - sscal.o a - sasum.o a - snrm2.o a - sdot.o a - ssyr2k.o a - saxpy.o a - sgemv.o a - ssyr2.o a - ssymv.o a - sgemm.o a - strmm.o a - strmv.o a - sger.o a - zher2k.o a - zswap.o a - zgemv.o a - zhemv.o a - zscal.o a - zdotc.o a - zaxpy.o a - zher2.o a - zdscal.o a - ztrmv.o a - zcopy.o a - ztrmm.o a - zgemm.o a - zgerc.o ranlib blas.a cpp -traditional -P -DBINTRAJ qmmm_module.f > _qmmm_module.f mv blas.a /usr/local/apps/amber/11-1.5/amber11/lib make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/blas' cd ../arpack && make install gfortran -c -O3 -mtune=generic -ffree-form -o qmmm_module.o _qmmm_module.f make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/arpack' ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o ar: creating arpack.a a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - dsarpack.o a - wallclock.o ranlib arpack.a mv arpack.a /usr/local/apps/amber/11-1.5/amber11/lib make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/arpack' cpp -traditional -P -DBINTRAJ qm2_pm6_hof_module.f > _qm2_pm6_hof_module.f cpp -traditional -P -DBINTRAJ -DSQM qm_print_info.f > _qm_print_info.SQM.f cpp -traditional -P -DBINTRAJ -DSQM qm2_read_nm_and_alloc.f > _qm2_read_nm_and_alloc.SQM.f cpp -traditional -P -DBINTRAJ qm2_iterator_mod.f > _qm2_iterator_mod.f cpp -traditional -P -DBINTRAJ qm2_dftb_module.f > _qm2_dftb_module.f cpp -traditional -P -DBINTRAJ qm2_allocate_e_repul.f > _qm2_allocate_e_repul.f cpp -traditional -P -DBINTRAJ qm2_calc_charges.f > _qm2_calc_charges.f gfortran -c -O0 -ffree-form -o qm2_pm6_hof_module.o _qm2_pm6_hof_module.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_allocate_e_repul.o _qm2_allocate_e_repul.f gfortran -c -O3 -mtune=generic -ffree-form -o qm_print_info.SQM.o _qm_print_info.SQM.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_calc_charges.o _qm2_calc_charges.f gfortran -c -O0 -ffree-form -o qm2_iterator_mod.o _qm2_iterator_mod.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_read_nm_and_alloc.SQM.o _qm2_read_nm_and_alloc.SQM.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_module.o _qm2_dftb_module.f cpp -traditional -P -DBINTRAJ qm2_calc_rij_and_eqns.f > _qm2_calc_rij_and_eqns.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_calc_rij_and_eqns.o _qm2_calc_rij_and_eqns.f cpp -traditional -P -DBINTRAJ qm2_fock.f > _qm2_fock.f cpp -traditional -P -DBINTRAJ qm2_get_qmmm_forces.f > _qm2_get_qmmm_forces.f cpp -traditional -P -DBINTRAJ qm2_h1elec.f > _qm2_h1elec.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_fock.o _qm2_fock.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_get_qmmm_forces.o _qm2_get_qmmm_forces.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_h1elec.o _qm2_h1elec.f cpp -traditional -P -DBINTRAJ qm2_hcore_qmqm.f > _qm2_hcore_qmqm.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_hcore_qmqm.o _qm2_hcore_qmqm.f cpp -traditional -P -DBINTRAJ qm2_hcore_qmmm.f > _qm2_hcore_qmmm.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_hcore_qmmm.o _qm2_hcore_qmmm.f cpp -traditional -P -DBINTRAJ qm2_identify_peptide_links.f > _qm2_identify_peptide_links.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_identify_peptide_links.o _qm2_identify_peptide_links.f cpp -traditional -P -DBINTRAJ qm2_load_params_and_allocate.f > _qm2_load_params_and_allocate.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_load_params_and_allocate.o _qm2_load_params_and_allocate.f cpp -traditional -P -DBINTRAJ qm2_repp.f > _qm2_repp.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_repp.o _qm2_repp.f cpp -traditional -P -DBINTRAJ qm2_rotate_qmqm.f > _qm2_rotate_qmqm.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_rotate_qmqm.o _qm2_rotate_qmqm.f cpp -traditional -P -DBINTRAJ qm2_core_core_repulsion.f > _qm2_core_core_repulsion.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_core_core_repulsion.o _qm2_core_core_repulsion.f cpp -traditional -P -DBINTRAJ qm2_core_core_repulsion_dxyz.f > _qm2_core_core_repulsion_dxyz.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_core_core_repulsion_dxyz.o _qm2_core_core_repulsion_dxyz.f cpp -traditional -P -DBINTRAJ qm2_setup_orb_exp.f > _qm2_setup_orb_exp.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_setup_orb_exp.o _qm2_setup_orb_exp.f cpp -traditional -P -DBINTRAJ qm2_fock_predict.f > _qm2_fock_predict.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_fock_predict.o _qm2_fock_predict.f cpp -traditional -P -DBINTRAJ qm_gb.f > _qm_gb.f gfortran -c -O3 -mtune=generic -ffree-form -o qm_gb.o _qm_gb.f cpp -traditional -P -DBINTRAJ qm_zero_charges.f > _qm_zero_charges.f gfortran -c -O3 -mtune=generic -ffree-form -o qm_zero_charges.o _qm_zero_charges.f cpp -traditional -P -DBINTRAJ qm_assign_atom_types.f > _qm_assign_atom_types.f gfortran -c -O3 -mtune=generic -ffree-form -o qm_assign_atom_types.o _qm_assign_atom_types.f cpp -traditional -P -DBINTRAJ qm_link_atoms.f > _qm_link_atoms.f gfortran -c -O3 -mtune=generic -ffree-form -o qm_link_atoms.o _qm_link_atoms.f cpp -traditional -P -DBINTRAJ qm2_print_charges.f > _qm2_print_charges.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_print_charges.o _qm2_print_charges.f cpp -traditional -P -DBINTRAJ qm2_dftb_broyden.f > _qm2_dftb_broyden.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_broyden.o _qm2_dftb_broyden.f cpp -traditional -P -DBINTRAJ qm2_dftb_dispersion_egr.f > _qm2_dftb_dispersion_egr.f gfortran -c -O0 -ffree-form -o qm2_dftb_dispersion_egr.o _qm2_dftb_dispersion_egr.f cpp -traditional -P -DBINTRAJ qm2_dftb_dispersion_params.f > _qm2_dftb_dispersion_params.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_dispersion_params.o _qm2_dftb_dispersion_params.f cpp -traditional -P -DBINTRAJ qm2_dftb_dispersionread.f > _qm2_dftb_dispersionread.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_dispersionread.o _qm2_dftb_dispersionread.f cpp -traditional -P -DBINTRAJ qm2_dftb_energy.f > _qm2_dftb_energy.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_energy.o _qm2_dftb_energy.f cpp -traditional -P -DBINTRAJ qm2_dftb_ewevge.f > _qm2_dftb_ewevge.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_ewevge.o _qm2_dftb_ewevge.f cpp -traditional -P -DBINTRAJ qm2_dftb_externalshift.f > _qm2_dftb_externalshift.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_externalshift.o _qm2_dftb_externalshift.f cpp -traditional -P -DBINTRAJ qm2_dftb_fermi.f > _qm2_dftb_fermi.f cpp -traditional -P -DBINTRAJ qm2_dftb_get_qm_forces.f > _qm2_dftb_get_qm_forces.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_fermi.o _qm2_dftb_fermi.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_get_qm_forces.o _qm2_dftb_get_qm_forces.f cpp -traditional -P -DBINTRAJ qm2_dftb_get_qmmm_forces.f > _qm2_dftb_get_qmmm_forces.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_get_qmmm_forces.o _qm2_dftb_get_qmmm_forces.f cpp -traditional -P -DBINTRAJ qm2_dftb_gettab.f > _qm2_dftb_gettab.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_gettab.o _qm2_dftb_gettab.f cpp -traditional -P -DBINTRAJ qm2_dftb_load_params.f > _qm2_dftb_load_params.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_load_params.o _qm2_dftb_load_params.f cpp -traditional -P -DBINTRAJ qm2_dftb_mulliken.f > _qm2_dftb_mulliken.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_mulliken.o _qm2_dftb_mulliken.f cpp -traditional -P -DBINTRAJ qm2_dftb_repulsiv.f > _qm2_dftb_repulsiv.f cpp -traditional -P -DBINTRAJ qm2_dftb_shift.f > _qm2_dftb_shift.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_repulsiv.o _qm2_dftb_repulsiv.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_shift.o _qm2_dftb_shift.f cpp -traditional -P -DBINTRAJ qm2_dftb_skpar.f > _qm2_dftb_skpar.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_skpar.o _qm2_dftb_skpar.f cpp -traditional -P -DBINTRAJ qm2_dftb_slkode.f > _qm2_dftb_slkode.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_slkode.o _qm2_dftb_slkode.f cpp -traditional -P -DBINTRAJ qm2_dftb_read_cm3.f > _qm2_dftb_read_cm3.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_read_cm3.o _qm2_dftb_read_cm3.f cpp -traditional -P -DBINTRAJ qm2_dftb_cm3.f > _qm2_dftb_cm3.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_cm3.o _qm2_dftb_cm3.f cpp -traditional -P -DBINTRAJ qm2_dftb_gb.f > _qm2_dftb_gb.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_gb.o _qm2_dftb_gb.f cpp -traditional -P -DBINTRAJ qm2_dftb_3rd_order.f > _qm2_dftb_3rd_order.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_3rd_order.o _qm2_dftb_3rd_order.f cpp -traditional -P -DBINTRAJ sqm.f > _sqm.f cpp -traditional -P -DBINTRAJ -DSQM qm2_energy.f > _qm2_energy.SQM.f gfortran -c -O0 -ffree-form -o sqm.o _sqm.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_energy.SQM.o _qm2_energy.SQM.f cpp -traditional -P -DBINTRAJ -DSQM qm2_scf.f > _qm2_scf.SQM.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_scf.SQM.o _qm2_scf.SQM.f cpp -traditional -P -DBINTRAJ -DSQM qm2_dftb_scf.f > _qm2_dftb_scf.SQM.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_scf.SQM.o _qm2_dftb_scf.SQM.f cpp -traditional -P -DBINTRAJ qm2_get_qm_forces.f > _qm2_get_qm_forces.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_get_qm_forces.o _qm2_get_qm_forces.f _qm2_scf.SQM.f:1507.13: qmmm_scratch%mat_diag_workspace(1,1),qm2_struct%norbs,smallsum, & 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'eigen' at (1) _qm2_scf.SQM.f:1283.10: qmmm_scratch%mat_diag_workspace(1,1), & 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'e' at (1) _qm2_scf.SQM.f:1400.10: qmmm_scratch%mat_diag_workspace(1,1), & 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'e' at (1) _qm2_get_qm_forces.f:182.55: CALL qm2_deriv_qm_analyt(ii,jj,loop_count,qm2_struct%qm_qm_e_repul 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'qm_qm_e_repul' at (1) _qm2_get_qm_forces.f:207.23: qm2_params%atom_orb_zz_sxs_over_sas(1,1,qmitype,qmjtype) 1 Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'zz_sxs_over_sas' at (1) gfortran -ffree-form -o sqm constants.o findmask.o sqm.o xmin.o xminC.o amopen.o mexit.o assert.o timer_dummy.o nmlsrc.o qm_print_info.SQM.o qm2_energy.SQM.o qm2_read_nm_and_alloc.SQM.o qm2_scf.SQM.o qm2_dftb_scf.SQM.o qm2_allocate_e_repul.o qm2_calc_charges.o qm2_calc_rij_and_eqns.o qm2_dihed.o qm2_fock.o qm2_get_qm_forces.o qm2_get_qmmm_forces.o qm2_h1elec.o qm2_hcore_qmqm.o qm2_hcore_qmmm.o qm2_identify_peptide_links.o qm2_load_params_and_allocate.o qm2_repp.o qm2_rotate_qmqm.o qm2_core_core_repulsion.o qm2_core_core_repulsion_dxyz.o qm2_iterator_mod.o qm2_setup_orb_exp.o qm2_smallest_number.o qm2_fock_predict.o qm_gb.o qm_zero_charges.o qm_assign_atom_types.o qm_link_atoms.o qm2_print_charges.o qmmm_qmtheorymodule.o qm2_pm6_hof_module.o qm2_dftb_module.o qm2_dftb_broyden.o qm2_dftb_dispersion_egr.o qm2_dftb_dispersion_params.o qm2_dftb_dispersionread.o qm2_dftb_energy.o qm2_dftb_ewevge.o qm2_dftb_externalshift.o qm2_dftb_fermi.o qm2_dftb_get_qm_forces.o qm2_dftb_gamma.o qm2_dftb_gammamat.o qm2_dftb_get_qmmm_forces.o qm2_dftb_gettab.o qm2_dftb_load_params.o qm2_dftb_mulliken.o qm2_dftb_repulsiv.o qm2_dftb_self.o qm2_dftb_shift.o qm2_dftb_skpar.o qm2_dftb_slkode.o qm2_dftb_slktrafo.o qm2_dftb_read_cm3.o qm2_dftb_cm3.o qm2_dftb_gb.o qm2_dftb_3rd_order.o qmmm_module.o \ /usr/local/apps/amber/11-1.5/amber11/lib/arpack.a /usr/local/apps/amber/11-1.5/amber11/lib/lapack.a /usr/local/apps/amber/11-1.5/amber11/lib/blas.a ../lib/sys.a mv sqm /usr/local/apps/amber/11-1.5/amber11/bin make[1]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/sqm' (cd ptraj && make install ) make[1]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/ptraj' cd pdb && make gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o main.o main.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o rdparm.o rdparm.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o dispatch.o dispatch.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o help.o help.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o utility.o utility.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o second.o second.c make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/ptraj/pdb' gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdbrun.o pdbrun.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_read.o pdb_read.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_sprntf.o pdb_sprntf.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o io.o io.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_sscanf.o pdb_sscanf.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_write.o pdb_write.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o ms.o ms.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o trajectory.o trajectory.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o netcdf_ptraj.o netcdf_ptraj.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o parallel_ptraj.o parallel_ptraj.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o evec.o evec.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o torsion.o torsion.c ar rv libpdb.a pdbrun.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o ms.o gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o mask.o mask.c ar: creating libpdb.a a - pdbrun.o a - pdb_read.o a - pdb_sprntf.o a - pdb_sscanf.o a - pdb_write.o a - ms.o ranlib libpdb.a gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o rms.o rms.c mv libpdb.a /usr/local/apps/amber/11-1.5/amber11/lib make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/ptraj/pdb' cd ../arpack && make make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/arpack' ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o ar: creating arpack.a a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - dsarpack.o a - wallclock.o ranlib arpack.a mv arpack.a /usr/local/apps/amber/11-1.5/amber11/lib make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/arpack' gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o display.o display.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o interface.o interface.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o energy.o energy.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o experimental.o experimental.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ptraj.o ptraj.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o actions.o actions.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o analyze.o analyze.c gfortran -c -ffree-form -O3 -mtune=generic -o thermo.o thermo.f gfortran -c -ffree-form -O3 -mtune=generic -o pubfft.o pubfft.f pubfft.f:73.37: call cfftb1 (n,c,wsave,wsave(iw1),wsave(iw2)) 1 Warning: Type mismatch in argument 'ifac' at (1); passed REAL(8) to INTEGER(4) pubfft.f:157.37: call cfftf1 (n,c,wsave,wsave(iw1),wsave(iw2)) 1 Warning: Type mismatch in argument 'ifac' at (1); passed REAL(8) to INTEGER(4) pubfft.f:268.29: call cffti1 (n,wsave(iw1),wsave(iw2)) 1 Warning: Type mismatch in argument 'ifac' at (1); passed REAL(8) to INTEGER(4) pubfft.f:1038.41: if ( isign == -1) call cfftf(n1,work,table(1,1)) 1 Warning: Type mismatch in argument 'c' at (1); passed COMPLEX(8) to REAL(8) pubfft.f:1039.40: if ( isign == 1) call cfftb(n1,work,table(1,1)) 1 Warning: Type mismatch in argument 'c' at (1); passed COMPLEX(8) to REAL(8) pubfft.f:1053.41: if ( isign == -1) call cfftf(n2,work,table(1,2)) 1 Warning: Type mismatch in argument 'c' at (1); passed COMPLEX(8) to REAL(8) pubfft.f:1054.40: if ( isign == 1) call cfftb(n2,work,table(1,2)) 1 Warning: Type mismatch in argument 'c' at (1); passed COMPLEX(8) to REAL(8) pubfft.f:1068.41: if ( isign == -1) call cfftf(n3,work,table(1,3)) 1 Warning: Type mismatch in argument 'c' at (1); passed COMPLEX(8) to REAL(8) pubfft.f:1069.40: if ( isign == 1) call cfftb(n3,work,table(1,3)) 1 Warning: Type mismatch in argument 'c' at (1); passed COMPLEX(8) to REAL(8) gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o cluster.o cluster.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o clusterLib.o clusterLib.c cd ../lapack && make install make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/lapack' ar rv lapack.a dsyev.o dsygv.o dlansy.o dsytrd.o dorgtr.o dsteqr.o dsterf.o dlascl.o dlamch.o ilaenv.o dlassq.o dsytd2.o dlatrd.o dorgql.o dorgqr.o dlasrt.o dlaset.o dlanst.o dlaev2.o dlasr.o dlapy2.o dlartg.o dlae2.o dorg2r.o dlarft.o dlarfb.o dorg2l.o dlarfg.o dlarf.o dspev.o dlansp.o dsptrd.o dopgtr.o dppsv.o dspsv.o dgeev.o dsptrs.o dsptrf.o dpptrs.o dpptrf.o dgebak.o dtrevc.o dlacpy.o dhseqr.o dorghr.o dgehrd.o dgebal.o dlange.o dlabad.o dlahqr.o dlarfx.o dlanhs.o dlaln2.o dgehd2.o dlahrd.o dlanv2.o dladiv.o dgerq2.o dorm2r.o dlarnv.o dgeqr2.o dlaruv.o dspevd.o dstedc.o dopmtr.o dlaed0.o dlaed1.o dlaed7.o dlaeda.o dlaed8.o dlaed9.o dlamrg.o dlaed2.o dlaed3.o dpotrs.o dpotrf.o dsygst.o dpotf2.o dsygs2.o dposv.o dlaebz.o dlagtf.o dlagts.o dormqr.o dormql.o dorm2l.o dlaed4.o dlaed5.o dlaed6.o ieeeck.o dsyevx.o dsyevd.o dstebz.o dstein.o dormtr.o zheev.o lsame.o zlanhe.o zlascl.o zhetrd.o zungtr.o zsteqr.o zlassq.o zlatrd.o zhetd2.o zungql.o zungqr.o zlasr.o zlaset.o zlacgv.o zlarfg.o zung2l.o zlarft.o zlarfb.o zung2r.o dlapy3.o zladiv.o zlarf.o dgesvd.o dgebrd.o dgebd2.o dlabrd.o dorgbr.o dbdsqr.o dgeqrf.o dormbr.o dgelqf.o dorglq.o dlas2.o dlasq1.o dlasv2.o dgelq2.o dorgl2.o dlasq2.o dormlq.o dlasq3.o dlasq4.o dlasq5.o dorml2.o dlasq6.o dgesv.o dgetrs.o dlaswp.o dgetrf.o dgetf2.o dsysv.o dsytrs.o dsytrf.o dlasyf.o dsytf2.o dgelsd.o dlalsd.o dlasdq.o dlasda.o dlalsa.o dlasd6.o dlals0.o dlasdt.o dlasd7.o dlasd8.o dlasd4.o dlasd5.o dgelsy.o dlaic1.o dtzrzf.o dormrz.o dlarzt.o dlarzb.o dlatrz.o dormr3.o dgeqp3.o dlarz.o dlaqps.o dlaqp2.o dspevx.o dsyevr.o dstegr.o dlarrv.o dlarre.o dlarrb.o dlar1v.o dlarrf.o dggev.o dhgeqz.o dgghrd.o dtgevc.o dggbak.o dggbal.o dlag2.o disnan.o dlaisnan.o dlarfp.o dstemr.o dlarra.o dlarrc.o dlarrd.o dlarrj.o dlarrk.o dlarrr.o dlaneg.o dlaqr0.o dlaqr1.o dlaqr2.o dlaqr3.o dlaqr4.o dlaqr5.o dlahr2.o dormhr.o dtrexc.o dlaexc.o dlasy2.o iparmq.o iladlc.o iladlr.o ar: creating lapack.a a - dsyev.o a - dsygv.o a - dlansy.o a - dsytrd.o a - dorgtr.o a - dsteqr.o a - dsterf.o a - dlascl.o a - dlamch.o a - ilaenv.o a - dlassq.o a - dsytd2.o a - dlatrd.o a - dorgql.o a - dorgqr.o a - dlasrt.o a - dlaset.o a - dlanst.o a - dlaev2.o a - dlasr.o a - dlapy2.o a - dlartg.o a - dlae2.o a - dorg2r.o a - dlarft.o a - dlarfb.o a - dorg2l.o a - dlarfg.o a - dlarf.o a - dspev.o a - dlansp.o a - dsptrd.o a - dopgtr.o a - dppsv.o a - dspsv.o a - dgeev.o a - dsptrs.o a - dsptrf.o a - dpptrs.o a - dpptrf.o a - dgebak.o a - dtrevc.o a - dlacpy.o a - dhseqr.o a - dorghr.o a - dgehrd.o a - dgebal.o a - dlange.o a - dlabad.o a - dlahqr.o a - dlarfx.o a - dlanhs.o a - dlaln2.o a - dgehd2.o a - dlahrd.o a - dlanv2.o a - dladiv.o a - dgerq2.o a - dorm2r.o a - dlarnv.o a - dgeqr2.o a - dlaruv.o a - dspevd.o a - dstedc.o a - dopmtr.o a - dlaed0.o a - dlaed1.o a - dlaed7.o a - dlaeda.o a - dlaed8.o a - dlaed9.o a - dlamrg.o a - dlaed2.o a - dlaed3.o a - dpotrs.o a - dpotrf.o a - dsygst.o a - dpotf2.o a - dsygs2.o a - dposv.o a - dlaebz.o a - dlagtf.o a - dlagts.o a - dormqr.o a - dormql.o a - dorm2l.o a - dlaed4.o a - dlaed5.o a - dlaed6.o a - ieeeck.o a - dsyevx.o a - dsyevd.o a - dstebz.o a - dstein.o a - dormtr.o a - zheev.o a - lsame.o a - zlanhe.o a - zlascl.o a - zhetrd.o a - zungtr.o a - zsteqr.o a - zlassq.o a - zlatrd.o a - zhetd2.o a - zungql.o a - zungqr.o a - zlasr.o a - zlaset.o a - zlacgv.o a - zlarfg.o a - zung2l.o a - zlarft.o a - zlarfb.o a - zung2r.o a - dlapy3.o a - zladiv.o a - zlarf.o a - dgesvd.o a - dgebrd.o a - dgebd2.o a - dlabrd.o a - dorgbr.o a - dbdsqr.o a - dgeqrf.o a - dormbr.o a - dgelqf.o a - dorglq.o a - dlas2.o a - dlasq1.o a - dlasv2.o a - dgelq2.o a - dorgl2.o a - dlasq2.o a - dormlq.o a - dlasq3.o a - dlasq4.o a - dlasq5.o a - dorml2.o a - dlasq6.o a - dgesv.o a - dgetrs.o a - dlaswp.o a - dgetrf.o a - dgetf2.o a - dsysv.o a - dsytrs.o a - dsytrf.o a - dlasyf.o a - dsytf2.o a - dgelsd.o a - dlalsd.o a - dlasdq.o a - dlasda.o a - dlalsa.o a - dlasd6.o a - dlals0.o a - dlasdt.o a - dlasd7.o a - dlasd8.o a - dlasd4.o a - dlasd5.o a - dgelsy.o a - dlaic1.o a - dtzrzf.o a - dormrz.o a - dlarzt.o a - dlarzb.o a - dlatrz.o a - dormr3.o a - dgeqp3.o a - dlarz.o a - dlaqps.o a - dlaqp2.o a - dspevx.o a - dsyevr.o a - dstegr.o a - dlarrv.o a - dlarre.o a - dlarrb.o a - dlar1v.o a - dlarrf.o a - dggev.o a - dhgeqz.o a - dgghrd.o a - dtgevc.o a - dggbak.o a - dggbal.o a - dlag2.o a - disnan.o a - dlaisnan.o a - dlarfp.o a - dstemr.o a - dlarra.o a - dlarrc.o a - dlarrd.o a - dlarrj.o a - dlarrk.o a - dlarrr.o a - dlaneg.o a - dlaqr0.o a - dlaqr1.o a - dlaqr2.o a - dlaqr3.o a - dlaqr4.o a - dlaqr5.o a - dlahr2.o a - dormhr.o a - dtrexc.o a - dlaexc.o a - dlasy2.o a - iparmq.o a - iladlc.o a - iladlr.o ranlib lapack.a mv lapack.a /usr/local/apps/amber/11-1.5/amber11/lib make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/lapack' cd ../blas && make install make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/blas' ar rv blas.a dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dgbmv.o dgemm.o dgemv.o dger.o dnrm2.o drot.o drotg.o dsbmv.o dscal.o dspmv.o dspr.o dspr2.o dswap.o dsymm.o dsymv.o dsyr.o dsyr2.o dsyr2k.o dsyrk.o dtbmv.o dtbsv.o dtpmv.o dtpsv.o dtrmm.o dtrmv.o dtrsm.o dtrsv.o dummy.o dzasum.o dznrm2.o idamax.o isamax.o lsame.o xerbla.o scopy.o sswap.o sscal.o sasum.o snrm2.o sdot.o ssyr2k.o saxpy.o sgemv.o ssyr2.o ssymv.o sgemm.o strmm.o strmv.o sger.o zher2k.o zswap.o zgemv.o zhemv.o zscal.o zdotc.o zaxpy.o zher2.o zdscal.o ztrmv.o zcopy.o ztrmm.o zgemm.o zgerc.o ar: creating blas.a a - dasum.o a - daxpy.o a - dcabs1.o a - dcopy.o a - ddot.o a - dgbmv.o a - dgemm.o a - dgemv.o a - dger.o a - dnrm2.o a - drot.o a - drotg.o a - dsbmv.o a - dscal.o a - dspmv.o a - dspr.o a - dspr2.o a - dswap.o a - dsymm.o a - dsymv.o a - dsyr.o a - dsyr2.o a - dsyr2k.o a - dsyrk.o a - dtbmv.o a - dtbsv.o a - dtpmv.o a - dtpsv.o a - dtrmm.o a - dtrmv.o a - dtrsm.o a - dtrsv.o a - dummy.o a - dzasum.o a - dznrm2.o a - idamax.o a - isamax.o a - lsame.o a - xerbla.o a - scopy.o a - sswap.o a - sscal.o a - sasum.o a - snrm2.o a - sdot.o a - ssyr2k.o a - saxpy.o a - sgemv.o a - ssyr2.o a - ssymv.o a - sgemm.o a - strmm.o a - strmv.o a - sger.o a - zher2k.o a - zswap.o a - zgemv.o a - zhemv.o a - zscal.o a - zdotc.o a - zaxpy.o a - zher2.o a - zdscal.o a - ztrmv.o a - zcopy.o a - ztrmm.o a - zgemm.o a - zgerc.o ranlib blas.a mv blas.a /usr/local/apps/amber/11-1.5/amber11/lib make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/blas' gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ \ -o rdparm main.o rdparm.o dispatch.o help.o utility.o second.o io.o trajectory.o netcdf_ptraj.o parallel_ptraj.o evec.o torsion.o mask.o rms.o display.o interface.o energy.o experimental.o ptraj.o actions.o analyze.o thermo.o pubfft.o cluster.o clusterLib.o /usr/local/apps/amber/11-1.5/amber11/lib/libpdb.a /usr/local/apps/amber/11-1.5/amber11/lib/arpack.a /usr/local/apps/amber/11-1.5/amber11/lib/lapack.a /usr/local/apps/amber/11-1.5/amber11/lib/blas.a -lgfortran /usr/local/apps/amber/11-1.5/amber11/lib/libnetcdf.a -lm gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ \ -o ptraj main.o rdparm.o dispatch.o help.o utility.o second.o io.o trajectory.o netcdf_ptraj.o parallel_ptraj.o evec.o torsion.o mask.o rms.o display.o interface.o energy.o experimental.o ptraj.o actions.o analyze.o thermo.o pubfft.o cluster.o clusterLib.o /usr/local/apps/amber/11-1.5/amber11/lib/libpdb.a /usr/local/apps/amber/11-1.5/amber11/lib/arpack.a /usr/local/apps/amber/11-1.5/amber11/lib/lapack.a /usr/local/apps/amber/11-1.5/amber11/lib/blas.a -lgfortran /usr/local/apps/amber/11-1.5/amber11/lib/libnetcdf.a -lm /bin/mv rdparm ptraj /usr/local/apps/amber/11-1.5/amber11/bin make[1]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/ptraj' (cd cpptraj && make yes) make[1]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/cpptraj' cd src && make -f Makefile_at install make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/cpptraj/src' g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o main.o main.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AmberNetcdf.o AmberNetcdf.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AmberParm.o AmberParm.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AmberTraj.o AmberTraj.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TrajFile.o TrajFile.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Frame.o Frame.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o PtrajState.o PtrajState.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ArgList.o ArgList.cpp gcc -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ptrajmask.o ptrajmask.c g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Distance.o Action_Distance.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ParmFileList.o ParmFileList.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TrajinList.o TrajinList.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TrajoutList.o TrajoutList.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ReferenceList.o ReferenceList.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CoordFileList.o CoordFileList.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o PtrajActionList.o PtrajActionList.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DataSet.o DataSet.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DataSetList.o DataSetList.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o vectormath.o vectormath.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o FrameList.o FrameList.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Rmsd.o Action_Rmsd.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Dihedral.o Action_Dihedral.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DataFile.o DataFile.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DataFileList.o DataFileList.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o PDBfile.o PDBfile.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o PtrajFile.o PtrajFile.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o PDBfileRoutines.o PDBfileRoutines.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AtomMap.o AtomMap.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o BaseFileIO.o BaseFileIO.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StdFile.o StdFile.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o GzipFile.o GzipFile.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AmberRestart.o AmberRestart.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Angle.o Action_Angle.cpp gcc -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o PtrajMpi.o PtrajMpi.c g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o MpiFile.o MpiFile.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Strip.o Action_Strip.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action.o Action.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o RemdTraj.o RemdTraj.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AtomMask.o AtomMask.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o mapDataSet.o mapDataSet.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_DSSP.o Action_DSSP.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o stringDataSet.o stringDataSet.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Center.o Action_Center.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Bzip2File.o Bzip2File.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Hbond.o Action_Hbond.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o intDataSet.o intDataSet.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Image.o Action_Image.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Surf.o Action_Surf.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Radgyr.o Action_Radgyr.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Conflib.o Conflib.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Mask.o Action_Mask.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Closest.o Action_Closest.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o NetcdfRoutines.o NetcdfRoutines.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AmberRestartNC.o AmberRestartNC.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CpptrajStdio.o CpptrajStdio.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Mol2File.o Mol2File.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Mol2FileRoutines.o Mol2FileRoutines.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_NAstruct.o Action_NAstruct.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DistRoutines.o DistRoutines.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AxisType.o AxisType.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TorsionRoutines.o TorsionRoutines.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Pucker.o Action_Pucker.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Range.o Range.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Outtraj.o Action_Outtraj.cpp g++ -c -I/usr/local/apps/amber/11-1.5/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Rms2d.o Action_Rms2d.cpp g++ -o cpptraj main.o AmberNetcdf.o AmberParm.o AmberTraj.o TrajFile.o Frame.o PtrajState.o ArgList.o ptrajmask.o Action_Distance.o ParmFileList.o TrajinList.o TrajoutList.o ReferenceList.o CoordFileList.o PtrajActionList.o DataSet.o DataSetList.o vectormath.o FrameList.o Action_Rmsd.o Action_Dihedral.o DataFile.o DataFileList.o PDBfile.o PtrajFile.o PDBfileRoutines.o AtomMap.o BaseFileIO.o StdFile.o GzipFile.o AmberRestart.o Action_Angle.o PtrajMpi.o MpiFile.o Action_Strip.o Action.o RemdTraj.o AtomMask.o mapDataSet.o Action_DSSP.o stringDataSet.o Action_Center.o Bzip2File.o Action_Hbond.o intDataSet.o Action_Image.o Action_Surf.o Action_Radgyr.o Conflib.o Action_Mask.o Action_Closest.o NetcdfRoutines.o AmberRestartNC.o CpptrajStdio.o Mol2File.o Mol2FileRoutines.o Action_NAstruct.o DistRoutines.o AxisType.o TorsionRoutines.o Action_Pucker.o Range.o Action_Outtraj.o Action_Rms2d.o /usr/local/apps/amber/11-1.5/amber11/lib/libnetcdf.a -lz -lbz2 mv cpptraj /usr/local/apps/amber/11-1.5/amber11/bin/ make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/cpptraj/src' make[1]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/cpptraj' (cd reduce && make install ) make[1]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/reduce' installing ./toolclasses... make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/reduce/toolclasses' g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c UseCount.cpp -o UseCount.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c Point3d.cpp -o Point3d.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c Stringclass.cpp -o Stringclass.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c Hash.cpp -o Hash.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c utility.cpp -o utility.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c column_sprintf.cpp -o column_sprintf.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c column_sscanf.cpp -o column_sscanf.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c DisjointSets.cpp -o DisjointSets.o Loading libtoolclasses.a ... done make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/reduce/toolclasses' installing ./libpdb... make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/reduce/libpdb' g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_read.cpp -o pdb_read.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_sprntf.cpp -o pdb_sprntf.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_sscanf.cpp -o pdb_sscanf.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_chars.cpp -o pdb_chars.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_type.cpp -o pdb_type.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb++.cpp -o pdb++.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdbinput.cpp -o pdbinput.o Loading libpdb++.a ... done make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/reduce/libpdb' installing ./reduce_src... make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/reduce/reduce_src' g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/apps/amber/11-1.5/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o GraphToHoldScores.o GraphToHoldScores.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/apps/amber/11-1.5/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o reduce.o reduce.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/apps/amber/11-1.5/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o CTab.o CTab.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/apps/amber/11-1.5/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o ElementInfo.o ElementInfo.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/apps/amber/11-1.5/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o StdResH.o StdResH.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/apps/amber/11-1.5/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o ResBlk.o ResBlk.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/apps/amber/11-1.5/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o AtomConn.o AtomConn.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/apps/amber/11-1.5/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o AtomPositions.o AtomPositions.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/apps/amber/11-1.5/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o DotSph.o DotSph.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/apps/amber/11-1.5/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o Mover.o Mover.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/apps/amber/11-1.5/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o RotMethyl.o RotMethyl.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/apps/amber/11-1.5/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o RotDonor.o RotDonor.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/apps/amber/11-1.5/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o FlipMemo.o FlipMemo.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/apps/amber/11-1.5/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o CliqueList.o CliqueList.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/apps/amber/11-1.5/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o AtomDescr.o AtomDescr.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/apps/amber/11-1.5/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o PDBrec.o PDBrec.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/apps/amber/11-1.5/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o MoveableNode.o MoveableNode.cpp gcc -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/usr/local/apps/amber/11-1.5/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -c -o hybrid_36_c.o hybrid_36_c.c g++ -o reduce GraphToHoldScores.o reduce.o CTab.o ElementInfo.o StdResH.o ResBlk.o AtomConn.o AtomPositions.o DotSph.o Mover.o RotMethyl.o RotDonor.o FlipMemo.o CliqueList.o AtomDescr.o PDBrec.o MoveableNode.o hybrid_36_c.o -L../libpdb -lpdb++ -L../toolclasses -ltoolclasses -lm mv reduce /usr/local/apps/amber/11-1.5/amber11/bin gunzip -c -d ../reduce_wwPDB_het_dict.txt.gz > /usr/local/apps/amber/11-1.5/amber11/dat/reduce_wwPDB_het_dict.txt make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/reduce/reduce_src' make[1]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/reduce' (cd leap && make install ) make[1]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/leap' Compiling basic programs cd src/leap && make installteLeap make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/leap/src/leap' gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o basics.o basics.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o sysdepend.o sysdepend.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o stringExtra.o stringExtra.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o varArray.o varArray.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o getline.o getline.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o avl.o avl.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_format.o pdb_format.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_read.o pdb_read.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_sprntf.o pdb_sprntf.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_sscanf.o pdb_sscanf.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_write.o pdb_write.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o vector.o vector.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o zMatrix.o zMatrix.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o sort.o sort.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o bag.o bag.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o hash.o hash.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o dictionary.o dictionary.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o database.o database.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o nVector.o nVector.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o ring.o ring.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o matrix.o matrix.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o fortran.o fortran.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o displayer.o displayer.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o assoc.o assoc.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o atom.o atom.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o byteArray.o byteArray.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o collection.o collection.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o container.o container.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o internal.o internal.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o list.o list.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o loop.o loop.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o molecule.o molecule.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o oDouble.o oDouble.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o oInteger.o oInteger.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o oString.o oString.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o objekt.o objekt.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o parmSet.o parmSet.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o residue.o residue.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o unit.o unit.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o unitio.o unitio.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o tripos.o tripos.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o graphUtil.o graphUtil.c residue.c: In function ‘ResidueConnect’: residue.c:336:17: warning: passing argument 1 of ‘AtomBondTo’ from incompatible pointer type [enabled by default] atom.h:300:25: note: expected ‘ATOM’ but argument is of type ‘OBJEKT’ residue.c:336:17: warning: passing argument 2 of ‘AtomBondTo’ from incompatible pointer type [enabled by default] atom.h:300:25: note: expected ‘ATOM’ but argument is of type ‘OBJEKT’ residue.c: In function ‘ResidueMutate’: residue.c:464:5: warning: passing argument 1 of ‘BuildFixInternals’ from incompatible pointer type [enabled by default] build.h:57:14: note: expected ‘UNIT’ but argument is of type ‘RESIDUE’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o select.o select.c graphUtil.c: In function ‘GraphUtilFindAllSmallestRingsAndRingGroups’: graphUtil.c:675:5: warning: passing argument 1 of ‘SortByInteger’ from incompatible pointer type [enabled by default] sort.h:46:13: note: expected ‘GENP’ but argument is of type ‘struct RINGSORTt *’ graphUtil.c:675:5: warning: passing argument 4 of ‘SortByInteger’ from incompatible pointer type [enabled by default] sort.h:46:13: note: expected ‘GENP’ but argument is of type ‘int *’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o amber.o amber.c unitio.c: In function ‘zUnitIOSaveAmberParmFormat’: unitio.c:4066:27: warning: passing argument 1 of ‘SortByInteger’ from incompatible pointer type [enabled by default] sort.h:46:13: note: expected ‘GENP’ but argument is of type ‘int *’ unitio.c:4066:27: warning: passing argument 4 of ‘SortByInteger’ from incompatible pointer type [enabled by default] sort.h:46:13: note: expected ‘GENP’ but argument is of type ‘int *’ unitio.c: In function ‘zUnitIOSaveAmberParmFormat_old’: unitio.c:6137:33: warning: passing argument 1 of ‘SortByInteger’ from incompatible pointer type [enabled by default] sort.h:46:13: note: expected ‘GENP’ but argument is of type ‘int *’ unitio.c:6137:33: warning: passing argument 4 of ‘SortByInteger’ from incompatible pointer type [enabled by default] sort.h:46:13: note: expected ‘GENP’ but argument is of type ‘int *’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o build.o build.c amber.c: In function ‘uAmberReadUnitFromPrep’: amber.c:1039:25: warning: passing argument 1 of ‘SortByInteger’ from incompatible pointer type [enabled by default] sort.h:46:13: note: expected ‘GENP’ but argument is of type ‘struct INPUTLINEt *’ amber.c:1039:25: warning: passing argument 4 of ‘SortByInteger’ from incompatible pointer type [enabled by default] sort.h:46:13: note: expected ‘GENP’ but argument is of type ‘int *’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o elements.o elements.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o library.o library.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o chirality.o chirality.c build.c: In function ‘bBuildFlipChiralityFor’: build.c:1902:4: warning: passing argument 1 of ‘SortByInteger’ from incompatible pointer type [enabled by default] sort.h:46:13: note: expected ‘GENP’ but argument is of type ‘struct COUNTATOMSt *’ build.c:1902:4: warning: passing argument 4 of ‘SortByInteger’ from incompatible pointer type [enabled by default] sort.h:46:13: note: expected ‘GENP’ but argument is of type ‘int *’ build.c:1908:5: warning: passing argument 1 of ‘GraphUtilFindAllSmallestRings’ from incompatible pointer type [enabled by default] graphUtil.h:59:13: note: expected ‘UNIT’ but argument is of type ‘CONTAINER’ build.c: In function ‘BuildInternalsForSimpleRings’: build.c:2186:5: warning: passing argument 1 of ‘GraphUtilFindAllSmallestRingsAndRingGroups’ from incompatible pointer type [enabled by default] graphUtil.h:56:13: note: expected ‘UNIT’ but argument is of type ‘CONTAINER’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o minimizer.o minimizer.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o model.o model.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o parmLib.o parmLib.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdbFile.o pdbFile.c model.c: In function ‘zModelOrderAtoms’: model.c:499:3: warning: passing argument 1 of ‘Sift’ from incompatible pointer type [enabled by default] sort.h:55:13: note: expected ‘GENP’ but argument is of type ‘struct MODELATOMt *’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o mol2File.o mol2File.c pdbFile.c: In function ‘zPdbBuildCoordinatesForContainer’: pdbFile.c:1071:5: warning: passing argument 1 of ‘BuildFixInternals’ from incompatible pointer type [enabled by default] build.h:57:14: note: expected ‘UNIT’ but argument is of type ‘CONTAINER’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o tools.o tools.c pdbFile.c: In function ‘zPdbAddAtom’: pdbFile.c:1190:9: warning: passing argument 1 of ‘BuildInternalsForContainer’ from incompatible pointer type [enabled by default] build.h:54:14: note: expected ‘CONTAINER’ but argument is of type ‘UNIT’ pdbFile.c: In function ‘writeTER’: pdbFile.c:1744:25: warning: initialization from incompatible pointer type [enabled by default] gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o variables.o variables.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o parser.o parser.c tools.c: In function ‘iToolDistanceSearch’: tools.c:1648:9: warning: passing argument 1 of ‘SortByDouble’ from incompatible pointer type [enabled by default] sort.h:48:13: note: expected ‘GENP’ but argument is of type ‘struct PAIRt *’ tools.c:1648:9: warning: passing argument 4 of ‘SortByDouble’ from incompatible pointer type [enabled by default] sort.h:48:13: note: expected ‘GENP’ but argument is of type ‘double *’ tools.c: In function ‘ToolOrientPrincipleAxisAlongCoordinateAxis’: tools.c:1719:5: warning: passing argument 2 of ‘MathOpDiagonalize’ from incompatible pointer type [enabled by default] mathop.h:48:13: note: expected ‘VECTORASPTR’ but argument is of type ‘struct VECTOR *’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o help.o help.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o utilMakeHelp.o utilMakeHelp.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o octree.o octree.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o commands.o commands.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o mathop.o mathop.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o block.o block.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o restraint.o restraint.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o hybrid.o hybrid.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o tLeap.o tLeap.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o utilMakeHelp basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o utilMakeHelp.o -lm ./utilMakeHelp helptext.text helptext.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o helptext.o helptext.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ \ -o teLeap basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o assoc.o atom.o byteArray.o collection.o container.o internal.o list.o loop.o molecule.o oDouble.o oInteger.o oString.o objekt.o parmSet.o residue.o unit.o unitio.o tripos.o graphUtil.o select.o amber.o build.o elements.o library.o chirality.o minimizer.o model.o parmLib.o pdbFile.o mol2File.o tools.o variables.o parser.o help.o helptext.o octree.o commands.o mathop.o block.o restraint.o hybrid.o tLeap.o -lm mv teLeap /usr/local/apps/amber/11-1.5/amber11/bin make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/leap/src/leap' Copying shell script cp tleap /usr/local/apps/amber/11-1.5/amber11/bin/tleap chmod +x /usr/local/apps/amber/11-1.5/amber11/bin/tleap make install_xleap make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/leap' cd src/Wc && make make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/leap/src/Wc' gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o MapAg.o MapAg.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcActCB.o WcActCB.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcConvert.o WcConvert.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcCreate.o WcCreate.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcInvoke.o WcInvoke.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcLateBind.o WcLateBind.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcLoadRes.o WcLoadRes.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcName.o WcName.c MapAg.c: In function ‘MapAg_FirstGuessAtHashAlgorithm’: MapAg.c:191:17: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:210:17: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:227:17: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c: In function ‘MapAg_ReHashUnderCollisionLimit’: MapAg.c:290:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:290:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:290:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:309:26: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:309:26: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:309:26: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c: In function ‘MapAg_ReHash’: MapAg.c:349:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:349:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:349:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c: In function ‘MapAg_Find_Normal’: MapAg.c:455:29: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:455:29: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:455:29: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c: In function ‘MapAg_Define_Initial’: MapAg.c:492:19: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:492:19: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:492:19: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c: In function ‘MapAg_Define_Normal’: MapAg.c:505:11: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:505:11: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:505:11: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:527:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:527:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:527:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:532:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:532:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:532:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c: In function ‘MapAg_Forget_Normal’: MapAg.c:608:16: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:608:16: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:608:16: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] WcLateBind.c: In function ‘WcxLateBinder_BindFromRegistration’: WcLateBind.c:394:13: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcLateBind.c:394:13: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcLateBind.c:400:13: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcLateBind.c: In function ‘WcxFindObject_DefaultSearch’: WcLateBind.c:434:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcConvert.c: In function ‘WcxClosureFromSeg’: WcConvert.c:504:12: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcConvert.c:510:6: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcCreate.c: In function ‘WcxCreateFromQuark’: WcConvert.c: In function ‘WcxBuildCallbackList’: WcConvert.c:592:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcCreate.c:321:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcCreate.c:323:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcCreate.c:350:14: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcCreate.c:352:14: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcCreate.c:354:14: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcLoadRes.c: In function ‘WcLoadResourceFile’: WcLoadRes.c:145:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcLoadRes.c:150:5: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcReg.o WcReg.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcRegXt.o WcRegXt.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcSetValue.o WcSetValue.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcTemplate.o WcTemplate.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcWarn.o WcWarn.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcNameWidget.o WcNameWidget.c WcReg.c: In function ‘WcRegisterClassPtr’: WcReg.c:47:5: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcReg.c: In function ‘WcRegisterClassName’: WcReg.c:55:5: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcReg.c: In function ‘WcRegisterConstructor’: WcReg.c:69:5: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcReg.c: In function ‘WcRegisterDynamicLibs’: WcReg.c:125:2: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcReg.c: In function ‘WcRegisterCallback’: WcReg.c:169:5: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcReg.c: In function ‘WcRegisterMethod’: WcReg.c:203:5: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcReg.c:203:5: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcReg.c: In function ‘WcAttachThisToWidget’: WcReg.c:227:5: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcReg.c: In function ‘WcDetachThisFromWidget’: WcReg.c:239:5: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcTemplate.c: In function ‘WcxDumpEntry’: WcTemplate.c:285:29: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] WcTemplate.c:288:28: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] WcTemplate.c: In function ‘WcTemplateInitialize’: WcTemplate.c:476:9: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcTemplate.c:476:9: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] WcTemplate.c:493:6: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcTemplate.c:507:6: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcTemplate.c: In function ‘WcApplyTemplate’: WcTemplate.c:645:31: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] ar rv libWcLeap.a MapAg.o WcActCB.o WcConvert.o WcCreate.o WcInvoke.o WcLateBind.o WcLoadRes.o WcName.o WcReg.o WcRegXt.o WcSetValue.o WcTemplate.o WcWarn.o WcNameWidget.o ar: creating libWcLeap.a a - MapAg.o a - WcActCB.o a - WcConvert.o a - WcCreate.o a - WcInvoke.o a - WcLateBind.o a - WcLoadRes.o a - WcName.o a - WcReg.o a - WcRegXt.o a - WcSetValue.o a - WcTemplate.o a - WcWarn.o a - WcNameWidget.o ranlib libWcLeap.a make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/leap/src/Wc' cd src/Xmu && make make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/leap/src/Xmu' gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AllCmap.o AllCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Atoms.o Atoms.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ClientWin.o ClientWin.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Clip.o Clip.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CloseHook.o CloseHook.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CmapAlloc.o CmapAlloc.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CrCmap.o CrCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CrPixFBit.o CrPixFBit.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CursorName.o CursorName.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CvtCache.o CvtCache.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CvtStdSel.o CvtStdSel.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DefErrMsg.o DefErrMsg.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DelCmap.o DelCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DisplayQue.o DisplayQue.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Distinct.o Distinct.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DrawLogo.o DrawLogo.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DrRndRect.o DrRndRect.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o EditresCom.o EditresCom.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ExtAgent.o ExtAgent.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o FToCback.o FToCback.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o GetHost.o GetHost.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o GrayPixmap.o GrayPixmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Initer.o Initer.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o LocBitmap.o LocBitmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Lookup.o Lookup.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o LookupCmap.o LookupCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Lower.o Lower.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o RdBitF.o RdBitF.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ScrOfWin.o ScrOfWin.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ShapeWidg.o ShapeWidg.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StdCmap.o StdCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToBS.o StrToBS.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToBmap.o StrToBmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToCurs.o StrToCurs.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToGrav.o StrToGrav.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToJust.o StrToJust.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToLong.o StrToLong.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToOrnt.o StrToOrnt.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToShap.o StrToShap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToWidg.o StrToWidg.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o UpdMapHint.o UpdMapHint.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o VisCmap.o VisCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WidgetNode.o WidgetNode.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Xct.o Xct.c ar rv libXmu.a AllCmap.o Atoms.o ClientWin.o Clip.o CloseHook.o CmapAlloc.o CrCmap.o CrPixFBit.o CursorName.o CvtCache.o CvtStdSel.o DefErrMsg.o DelCmap.o DisplayQue.o Distinct.o DrawLogo.o DrRndRect.o EditresCom.o ExtAgent.o FToCback.o GetHost.o GrayPixmap.o Initer.o LocBitmap.o Lookup.o LookupCmap.o Lower.o RdBitF.o ScrOfWin.o ShapeWidg.o StdCmap.o StrToBS.o StrToBmap.o StrToCurs.o StrToGrav.o StrToJust.o StrToLong.o StrToOrnt.o StrToShap.o StrToWidg.o UpdMapHint.o VisCmap.o WidgetNode.o Xct.o ar: creating libXmu.a a - AllCmap.o a - Atoms.o a - ClientWin.o a - Clip.o a - CloseHook.o a - CmapAlloc.o a - CrCmap.o a - CrPixFBit.o a - CursorName.o a - CvtCache.o a - CvtStdSel.o a - DefErrMsg.o a - DelCmap.o a - DisplayQue.o a - Distinct.o a - DrawLogo.o a - DrRndRect.o a - EditresCom.o a - ExtAgent.o a - FToCback.o a - GetHost.o a - GrayPixmap.o a - Initer.o a - LocBitmap.o a - Lookup.o a - LookupCmap.o a - Lower.o a - RdBitF.o a - ScrOfWin.o a - ShapeWidg.o a - StdCmap.o a - StrToBS.o a - StrToBmap.o a - StrToCurs.o a - StrToGrav.o a - StrToJust.o a - StrToLong.o a - StrToOrnt.o a - StrToShap.o a - StrToWidg.o a - UpdMapHint.o a - VisCmap.o a - WidgetNode.o a - Xct.o ranlib libXmu.a make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/leap/src/Xmu' cd src/Xpm && make make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/leap/src/Xpm' gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o data.o data.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o create.o create.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o misc.o misc.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o rgb.o rgb.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o scan.o scan.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o parse.o parse.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o hashtable.o hashtable.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrBufFrI.o XpmCrBufFrI.c parse.c: In function ‘ParseColors’: parse.c:317:47: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] parse.c:399:47: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] parse.c: In function ‘ParsePixels’: parse.c:526:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrDataFrP.o XpmCrDataFrP.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrPFrBuf.o XpmCrPFrBuf.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmRdFToI.o XpmRdFToI.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmWrFFrI.o XpmWrFFrI.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrBufFrP.o XpmCrBufFrP.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrIFrBuf.o XpmCrIFrBuf.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrPFrData.o XpmCrPFrData.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmRdFToP.o XpmRdFToP.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmWrFFrP.o XpmWrFFrP.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrDataFrI.o XpmCrDataFrI.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrIFrData.o XpmCrIFrData.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmRdFToData.o XpmRdFToData.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmWrFFrData.o XpmWrFFrData.c ar rv libXpm.a data.o create.o misc.o rgb.o scan.o parse.o hashtable.o XpmCrBufFrI.o XpmCrDataFrP.o XpmCrPFrBuf.o XpmRdFToI.o XpmWrFFrI.o XpmCrBufFrP.o XpmCrIFrBuf.o XpmCrPFrData.o XpmRdFToP.o XpmWrFFrP.o XpmCrDataFrI.o XpmCrIFrData.o XpmRdFToData.o XpmWrFFrData.o ar: creating libXpm.a a - data.o a - create.o a - misc.o a - rgb.o a - scan.o a - parse.o a - hashtable.o a - XpmCrBufFrI.o a - XpmCrDataFrP.o a - XpmCrPFrBuf.o a - XpmRdFToI.o a - XpmWrFFrI.o a - XpmCrBufFrP.o a - XpmCrIFrBuf.o a - XpmCrPFrData.o a - XpmRdFToP.o a - XpmWrFFrP.o a - XpmCrDataFrI.o a - XpmCrIFrData.o a - XpmRdFToData.o a - XpmWrFFrData.o ranlib libXpm.a make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/leap/src/Xpm' cd src/Xraw && make make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/leap/src/Xraw' gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o 3d.o 3d.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AllWidgets.o AllWidgets.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Arrow.o Arrow.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AsciiSink.o AsciiSink.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AsciiSrc.o AsciiSrc.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AsciiText.o AsciiText.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Box.o Box.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Clock.o Clock.c Clock.c:48:12: warning: conflicting types for built-in function ‘round’ [enabled by default] AsciiSrc.c: In function ‘MyStrncpy’: AsciiSrc.c:1181:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] AsciiSrc.c:1181:26: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] AsciiSrc.c:1181:38: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] AsciiSrc.c:1181:51: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] AsciiSrc.c:1185:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] AsciiSrc.c:1185:27: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] AsciiSrc.c:1185:38: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] AsciiSrc.c:1185:48: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] AsciiSrc.c:1192:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] AsciiSrc.c:1192:27: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] AsciiSrc.c:1192:38: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] AsciiSrc.c:1192:48: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Command.o Command.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o color.o color.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Container.o Container.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Dialog.o Dialog.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Form.o Form.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Frame.o Frame.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Grip.o Grip.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Label.o Label.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o List.o List.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Logo.o Logo.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o MenuButton.o MenuButton.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Paned.o Paned.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Panner.o Panner.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Porthole.o Porthole.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Repeater.o Repeater.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Scrollbar.o Scrollbar.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ScrolledTable.o ScrolledTable.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Separator.o Separator.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Simple.o Simple.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o SimpleMenu.o SimpleMenu.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Sme.o Sme.c Scrollbar.c: In function ‘Release’: Scrollbar.c:1333:5: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o SmeBSB.o SmeBSB.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o SmeLine.o SmeLine.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StripChart.o StripChart.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o table.o table.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Table2.o Table2.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Text.o Text.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextSink.o TextSink.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextSrc.o TextSrc.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextAction.o TextAction.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextPop.o TextPop.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextTr.o TextTr.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Toggle.o Toggle.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Tree.o Tree.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Vendor.o Vendor.c TextPop.c: In function ‘DoSearch’: TextPop.c:794:31: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] TextPop.c: In function ‘Replace’: TextPop.c:924:31: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] Toggle.c: In function ‘Notify’: Toggle.c:422:35: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Viewport.o Viewport.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XawInit.o XawInit.c ar rv libXaw.a 3d.o AllWidgets.o Arrow.o AsciiSink.o AsciiSrc.o AsciiText.o Box.o Clock.o Command.o color.o Container.o Dialog.o Form.o Frame.o Grip.o Label.o List.o Logo.o MenuButton.o Paned.o Panner.o Porthole.o Repeater.o Scrollbar.o ScrolledTable.o Separator.o Simple.o SimpleMenu.o Sme.o SmeBSB.o SmeLine.o StripChart.o table.o Table2.o Text.o TextSink.o TextSrc.o TextAction.o TextPop.o TextTr.o Toggle.o Tree.o Vendor.o Viewport.o XawInit.o ar: creating libXaw.a a - 3d.o a - AllWidgets.o a - Arrow.o a - AsciiSink.o a - AsciiSrc.o a - AsciiText.o a - Box.o a - Clock.o a - Command.o a - color.o a - Container.o a - Dialog.o a - Form.o a - Frame.o a - Grip.o a - Label.o a - List.o a - Logo.o a - MenuButton.o a - Paned.o a - Panner.o a - Porthole.o a - Repeater.o a - Scrollbar.o a - ScrolledTable.o a - Separator.o a - Simple.o a - SimpleMenu.o a - Sme.o a - SmeBSB.o a - SmeLine.o a - StripChart.o a - table.o a - Table2.o a - Text.o a - TextSink.o a - TextSrc.o a - TextAction.o a - TextPop.o a - TextTr.o a - Toggle.o a - Tree.o a - Vendor.o a - Viewport.o a - XawInit.o ranlib libXaw.a make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/leap/src/Xraw' cd src/leap && make install make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/leap/src/leap' gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ \ -o teLeap basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o assoc.o atom.o byteArray.o collection.o container.o internal.o list.o loop.o molecule.o oDouble.o oInteger.o oString.o objekt.o parmSet.o residue.o unit.o unitio.o tripos.o graphUtil.o select.o amber.o build.o elements.o library.o chirality.o minimizer.o model.o parmLib.o pdbFile.o mol2File.o tools.o variables.o parser.o help.o helptext.o octree.o commands.o mathop.o block.o restraint.o hybrid.o tLeap.o -lm gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xTank.o xTank.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xAction.o xAction.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o x3d.o x3d.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xBasics.o xBasics.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaLeapc.o xaLeapc.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaUnitEditor.o xaUnitEditor.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaTable.o xaTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaAtomTable.o xaAtomTable.c xAction.c: In function ‘zActionTwistTorsions’: xAction.c:1112:41: warning: passing argument 1 of ‘BuildRotateAroundBondFromTo’ from incompatible pointer type [enabled by default] build.h:68:14: note: expected ‘CONTAINER’ but argument is of type ‘UNIT’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o XrawRegistr.o XrawRegistr.c xaUnitEditor.c: In function ‘XAUEAddHydrogensAndBuildExternals’: xaUnitEditor.c:888:5: warning: passing argument 1 of ‘BuildInternalsForSimpleRings’ from incompatible pointer type [enabled by default] build.h:75:14: note: expected ‘CONTAINER’ but argument is of type ‘UNIT’ xaUnitEditor.c: In function ‘XAUESelectedAtomsFlipChirality’: xaUnitEditor.c:1335:6: warning: passing argument 1 of ‘bBuildFlipChiralityFor’ from incompatible pointer type [enabled by default] build.h:71:14: note: expected ‘CONTAINER’ but argument is of type ‘UNIT’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaCommand.o xaCommand.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaTools.o xaTools.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaAtomParmTable.o xaAtomParmTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaBondParmTable.o xaBondParmTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaAngleParmTable.o xaAngleParmTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaParmEditor.o xaParmEditor.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaTorsionParmTable.o xaTorsionParmTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaImproperParmTable.o xaImproperParmTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaHBondParmTable.o xaHBondParmTable.c m4 xaLeap.rm4 > XaLeap_wcl gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ \ -o xaLeap basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o assoc.o atom.o byteArray.o collection.o container.o internal.o list.o loop.o molecule.o oDouble.o oInteger.o oString.o objekt.o parmSet.o residue.o unit.o unitio.o tripos.o graphUtil.o select.o amber.o build.o elements.o library.o chirality.o minimizer.o model.o parmLib.o pdbFile.o mol2File.o tools.o variables.o parser.o help.o helptext.o octree.o commands.o mathop.o block.o restraint.o hybrid.o xTank.o xAction.o x3d.o xBasics.o xaLeapc.o xaUnitEditor.o xaTable.o xaAtomTable.o XrawRegistr.o xaCommand.o xaTools.o xaAtomParmTable.o xaBondParmTable.o xaAngleParmTable.o xaParmEditor.o xaTorsionParmTable.o xaImproperParmTable.o xaHBondParmTable.o ../Xraw/libXaw.a ../Wc/libWcLeap.a ../Xpm/libXpm.a ../Xmu/libXmu.a -L/usr/X11R6/lib64 -L/usr/X11R6/lib -lXt -lXext -lSM -lICE -lX11 -lXau -lXdmcp -lm -lpthread ../Xraw/libXaw.a(AsciiSrc.o): In function `InitStringOrFile': AsciiSrc.c:(.text+0x1353): warning: the use of `tmpnam' is dangerous, better use `mkstemp' mv teLeap xaLeap /usr/local/apps/amber/11-1.5/amber11/bin mv XaLeap_wcl /usr/local/apps/amber/11-1.5/amber11/dat make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/leap/src/leap' Copying shell script cp xleap /usr/local/apps/amber/11-1.5/amber11/bin/xleap chmod +x /usr/local/apps/amber/11-1.5/amber11/bin/xleap Copying pixmaps mkdir /usr/local/apps/amber/11-1.5/amber11/dat/pixmap mkdir: cannot create directory `/usr/local/apps/amber/11-1.5/amber11/dat/pixmap': File exists make[2]: [install_xleap] Error 1 (ignored) cd pixmap; /bin/cp * /usr/local/apps/amber/11-1.5/amber11/dat/pixmap Finished with the install of LEaP make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/leap' make[1]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/leap' (cd gleap && make install ) make[1]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap' cd freelib && make make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/freelib' cd readline && make make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/freelib/readline' gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o bind.o bind.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o callback.o callback.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o compat.o compat.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o complete.o complete.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o display.o display.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o funmap.o funmap.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o histexpand.o histexpand.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o histfile.o histfile.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o history.o history.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o histsearch.o histsearch.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o input.o input.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o isearch.o isearch.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o keymaps.o keymaps.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o kill.o kill.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o macro.o macro.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o mbutil.o mbutil.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o misc.o misc.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o nls.o nls.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o parens.o parens.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o readline.o readline.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o rltty.o rltty.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o savestring.o savestring.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o search.o search.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o shell.o shell.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o signals.o signals.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o termcap.o termcap.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o terminal.o terminal.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o text.o text.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o tilde.o tilde.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o tparam.o tparam.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o undo.o undo.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o util.o util.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o version.o version.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o vi_mode.o vi_mode.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o xmalloc.o xmalloc.c rm -f libreadline.a ar cqs libreadline.a bind.o callback.o compat.o complete.o display.o funmap.o histexpand.o histfile.o history.o histsearch.o input.o isearch.o keymaps.o kill.o macro.o mbutil.o misc.o nls.o parens.o readline.o rltty.o savestring.o search.o shell.o signals.o termcap.o terminal.o text.o tilde.o tparam.o undo.o util.o version.o vi_mode.o xmalloc.o make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/freelib/readline' make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/freelib' cd mortsrc && make make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc' cd common && make make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/common' g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -o numvec.o numvec.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -o matrix.o matrix.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -o pertab.o pertab.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -o fortran.o fortran.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -o stralgo.o stralgo.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -o crdalgo.o crdalgo.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -o funstack.o funstack.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -o geometry.o geometry.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -o hashcode.o hashcode.cpp ../../freelib/boost/numeric/ublas/storage.hpp: In function ‘void mort::jacobi(mort::matrix&, mort::numvec&, mort::matrix&)’: ../../freelib/boost/numeric/ublas/storage.hpp:183:28: warning: ‘*((void*)& vZ +16)’ may be used uninitialized in this function [-Wuninitialized] matrix.cpp:78:27: note: ‘*((void*)& vZ +16)’ was declared here ../../freelib/boost/numeric/ublas/storage.hpp:183:28: warning: ‘*((void*)& vB +16)’ may be used uninitialized in this function [-Wuninitialized] matrix.cpp:78:16: note: ‘*((void*)& vB +16)’ was declared here ../../freelib/boost/numeric/ublas/storage.hpp: In function ‘mort::numvec mort::impose(std::vector >, const std::vector >&, const numvec&)’: ../../freelib/boost/numeric/ublas/storage.hpp:183:28: warning: ‘*((void*)& temporary +16)’ may be used uninitialized in this function [-Wuninitialized] ../../freelib/boost/numeric/ublas/vector.hpp:168:23: note: ‘*((void*)& temporary +16)’ was declared here ../../freelib/boost/numeric/ublas/storage.hpp:183:28: warning: ‘*((void*)& temporary +16)’ may be used uninitialized in this function [-Wuninitialized] ../../freelib/boost/numeric/ublas/vector.hpp:168:23: note: ‘*((void*)& temporary +16)’ was declared here rm -f libcommon.a ar cqs libcommon.a numvec.o matrix.o pertab.o fortran.o stralgo.o crdalgo.o funstack.o geometry.o hashcode.o make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/common' cd object && make make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/object' g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o atom.o atom.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o angl.o angl.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o bond.o bond.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o dihe.o dihe.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o impr.o impr.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o resd.o resd.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o atmv.o atmv.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o rela.o rela.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o data.o data.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o comp.o comp.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o root.o root.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o mole.o mole.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o morf.o morf.cpp data.cpp: In member function ‘void mort::mcmpdata_t::resize_parm()’: data.cpp:913:54: warning: variable ‘ve’ set but not used [-Wunused-but-set-variable] make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/object' cd objfun && make make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/objfun' g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o wrapper.o wrapper.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o atomfun.o atomfun.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o bondfun.o bondfun.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o fixbond.o fixbond.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o geomfun.o geomfun.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o hydrfun.o hydrfun.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o merge.o merge.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o parmfun.o parmfun.cpp fixbond.cpp:471:9: warning: unused parameter ‘atms’ [-Wunused-parameter] make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/objfun' cd ambfmt && make make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/ambfmt' g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o ambfrc-amoeba.o ambfrc-amoeba.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o amboff.o amboff.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o chain.o chain.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o energee.o energee.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o exclude.o exclude.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o extent.o extent.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o les.o les.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o parm.o parm.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o parmset.o parmset.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o prep.o prep.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o prmtop-amoeba.o prmtop-amoeba.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o prmtop.o prmtop.cpp make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/ambfmt' cd atmask && make make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/atmask' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o atom.o atom.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o condition.o condition.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o dist.o dist.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o logic.o logic.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o mask.o mask.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o paren.o paren.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o resd.o resd.cpp paren.cpp:14:23: warning: unused parameter ‘mol’ [-Wunused-parameter] mask.cpp: In constructor ‘mort::atmask::node_i::node_i(bool)’: mask.cpp:43:17: warning: the address of ‘std::vector* insts()’ will never be NULL [-Waddress] make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/atmask' cd capbox && make make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/capbox' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o addions.o addions.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o octree.o octree.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o shaper.o shaper.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o solute.o solute.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o solvate.o solvate.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o solvent.o solvent.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o region.o region.cpp solvate.cpp: In function ‘void mort::solvate(mort::solute_i&, const mort::molecule_t&, const mort::region_i&)’: solvate.cpp:68:16: warning: unused variable ‘svt_maxrad’ [-Wunused-variable] ../../freelib/boost/numeric/ublas/storage.hpp: In constructor ‘mort::capbox::octree_t::octree_t(const numvec&, int, double)’: ../../freelib/boost/numeric/ublas/storage.hpp:183:28: warning: ‘*((void*)& temporary +16)’ may be used uninitialized in this function [-Wuninitialized] ../../freelib/boost/numeric/ublas/vector.hpp:168:23: note: ‘*((void*)& temporary +16)’ was declared here ../../freelib/boost/numeric/ublas/storage.hpp: In constructor ‘mort::shl_solute::shl_solute(mort::solute_i&, double, double)’: ../../freelib/boost/numeric/ublas/storage.hpp:183:28: warning: ‘*((void*)& temporary +16)’ may be used uninitialized in this function [-Wuninitialized] ../../freelib/boost/numeric/ublas/vector.hpp:168:23: note: ‘*((void*)& temporary +16)’ was declared here ../../freelib/boost/numeric/ublas/storage.hpp: In constructor ‘mort::and_region::and_region(const mort::region_i&, const mort::region_i&)’: ../../freelib/boost/numeric/ublas/storage.hpp:183:28: warning: ‘*((void*)& temporary +16)’ may be used uninitialized in this function [-Wuninitialized] ../../freelib/boost/numeric/ublas/vector.hpp:168:23: note: ‘*((void*)& temporary +16)’ was declared here make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/capbox' cd enefrc && make make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/enefrc' g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o bonding.o bonding.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o ctrlparm.o ctrlparm.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o nonbond-lst.o nonbond-lst.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o nonbond-egb.o nonbond-egb.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o nonbond-pbc.o nonbond-pbc.cpp make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/enefrc' cd guilib && make make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/guilib' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o command.o command.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o console.o console.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o control.o control.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o grammar.o grammar.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o leaplog.o leaplog.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o mainwin.o mainwin.cpp make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/guilib' cd format && make make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/format' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o mol.o mol.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o mdb.o mdb.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o ext.o ext.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o frc.o frc.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o top.o top.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o sdf.o sdf.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o xyz.o xyz.cpp make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/format' cd smarts && make make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/smarts' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o parse.o parse.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o reader.o reader.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o status.o status.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o finder.o finder.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o atomexpr.o atomexpr.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o tyrule.o tyrule.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o ring.o ring.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o subst.o subst.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o smarts.o smarts.cpp make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/smarts' cd tripos && make make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/tripos' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o atom.o atom.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o bond.o bond.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o head.o head.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o resd.o resd.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o sect.o sect.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o mol2.o mol2.cpp make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/tripos' cd pdbent && make make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/pdbent' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o atom.o atom.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o bond.o bond.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o resd.o resd.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o mdlize.o mdlize.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o second.o second.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o pdbent.o pdbent.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o namemap.o namemap.cpp make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc/pdbent' rm -f libmort.a ar cqs libmort.a ambfmt/ambfrc-amoeba.o ambfmt/amboff.o ambfmt/chain.o ambfmt/energee.o ambfmt/exclude.o ambfmt/extent.o ambfmt/les.o ambfmt/parm.o ambfmt/parmset.o ambfmt/prep.o ambfmt/prmtop-amoeba.o ambfmt/prmtop.o atmask/atom.o atmask/condition.o atmask/dist.o atmask/logic.o atmask/mask.o atmask/paren.o atmask/resd.o capbox/addions.o capbox/octree.o capbox/shaper.o capbox/solute.o capbox/solvate.o capbox/solvent.o capbox/region.o common/numvec.o common/matrix.o common/pertab.o common/fortran.o common/stralgo.o common/crdalgo.o common/funstack.o common/geometry.o common/hashcode.o enefrc/bonding.o enefrc/ctrlparm.o enefrc/nonbond-lst.o enefrc/nonbond-egb.o enefrc/nonbond-pbc.o format/mol.o format/mdb.o format/ext.o format/frc.o format/top.o format/sdf.o format/xyz.o guilib/command.o guilib/console.o guilib/control.o guilib/grammar.o guilib/leaplog.o guilib/mainwin.o guilib/leaplog.o object/atom.o object/angl.o object/bond.o object/dihe.o object/impr.o object/resd.o object/atmv.o object/rela.o object/data.o object/comp.o object/root.o object/mole.o object/morf.o objfun/wrapper.o objfun/atomfun.o objfun/bondfun.o objfun/fixbond.o objfun/geomfun.o objfun/hydrfun.o objfun/merge.o objfun/parmfun.o pdbent/atom.o pdbent/bond.o pdbent/resd.o pdbent/mdlize.o pdbent/second.o pdbent/pdbent.o pdbent/namemap.o smarts/parse.o smarts/reader.o smarts/status.o smarts/finder.o smarts/atomexpr.o smarts/tyrule.o smarts/ring.o smarts/subst.o smarts/smarts.o tripos/atom.o tripos/bond.o tripos/head.o tripos/resd.o tripos/sect.o tripos/mol2.o make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/mortsrc' cd plugins && make make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/plugins' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o add.o add.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o addmap.o addmap.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o addions.o addions.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o bond.o bond.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o center.o center.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o charge.o charge.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o check.o check.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o copy.o copy.cpp check.cpp: In member function ‘virtual mort::command_ptr amber::check_command::clone(const std::vector >&) const’: check.cpp:294:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o create.o create.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o desc.o desc.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o delete.o delete.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o energy.o energy.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o geom.o geom.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o help.o help.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o impose.o impose.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o list.o list.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadcrd.o loadcrd.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadfrc.o loadfrc.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadmol2.o loadmol2.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadoff.o loadoff.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadpdb.o loadpdb.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadprep.o loadprep.cpp ../freelib/boost/numeric/ublas/storage.hpp: In function ‘void amber::impose_dist(const atomvec_t&, double)’: ../freelib/boost/numeric/ublas/storage.hpp:183:28: warning: ‘*((void*)& temporary +16)’ may be used uninitialized in this function [-Wuninitialized] ../freelib/boost/numeric/ublas/vector.hpp:168:23: note: ‘*((void*)& temporary +16)’ was declared here ../freelib/boost/numeric/ublas/storage.hpp:183:28: warning: ‘*((void*)& temporary +16)’ may be used uninitialized in this function [-Wuninitialized] ../freelib/boost/numeric/ublas/vector.hpp:168:23: note: ‘*((void*)& temporary +16)’ was declared here g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadsdf.o loadsdf.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o measure.o measure.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o merge.o merge.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o moloper.o moloper.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o savemol2.o savemol2.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o saveoff.o saveoff.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o savepdb.o savepdb.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o saveprm.o saveprm.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o savesdf.o savesdf.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o set.o set.cpp merge.cpp:103:15: warning: unused parameter ‘prev’ [-Wunused-parameter] g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o shell.o shell.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o solvate.o solvate.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o source.o source.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o transform.o transform.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o zmatrix.o zmatrix.cpp rm -f libplugins.a ar cqs libplugins.a add.o addmap.o addions.o bond.o center.o charge.o check.o copy.o create.o desc.o delete.o energy.o geom.o help.o impose.o list.o loadcrd.o loadfrc.o loadmol2.o loadoff.o loadpdb.o loadprep.o loadsdf.o measure.o merge.o moloper.o savemol2.o saveoff.o savepdb.o saveprm.o savesdf.o set.o shell.o solvate.o source.o transform.o zmatrix.o make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/plugins' cd leapsrc && make install make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/leapsrc' g++ -c -O2 -Wall -W -D_REENTRANT -I../mortsrc -I../mortsrc/guilib -I../plugins -I../freelib -I. -o strmain.o strmain.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../mortsrc -I../mortsrc/guilib -I../plugins -I../freelib -I. -o strbuff.o strbuff.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../mortsrc -I../mortsrc/guilib -I../plugins -I../freelib -I. -o plugins.o plugins.cpp g++ -static-libgcc -o sleap strmain.o strbuff.o plugins.o ../freelib/readline/libreadline.a -lm ../plugins/libplugins.a ../mortsrc/libmort.a mv sleap /usr/local/apps/amber/11-1.5/amber11/bin make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap/leapsrc' make[1]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/gleap' (cd rism && make install ) make[1]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/rism' cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism_report_c.f > _rism_report_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ constants.f > _constants.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ quaternion.f > _quaternion.f cpp -traditional -P -DBINTRAJ rism_nxtsec.f > _rism_nxtsec.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ blend.f > _blend.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ timer_c.f > _timer_c.f if [ "-L/usr/local/apps/amber/11-1.5/amber11/lib -ldrfftw -ldfftw" = '-lfftw2xf_gnu' ]; then\ cd /interfaces/fftw2xf && make lib \ compiler=gnu PRECISION=MKL_DOUBLE \ INSTALL_DIR=/usr/local/apps/amber/11-1.5/amber11/lib; \ else \ cd ../fftw-2.1.5 && make install; \ fi if [ "-L/usr/local/apps/amber/11-1.5/amber11/lib -ldrfftw -ldfftw" = '-lfftw2xf_gnu' ]; then\ cd /interfaces/fftw2xf && make lib \ compiler=gnu PRECISION=MKL_DOUBLE \ INSTALL_DIR=/usr/local/apps/amber/11-1.5/amber11/lib; \ else \ cd ../fftw-2.1.5 && make install; \ fi make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5' make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5' gfortran -c -O0 -ffree-form -o timer_c.o _timer_c.f gfortran -c -O3 -mtune=generic -ffree-form -o constants.o _constants.f gfortran -c -O3 -mtune=generic -ffree-form -o quaternion.o _quaternion.f gfortran -c -O3 -mtune=generic -ffree-form -o rism_report_c.o _rism_report_c.f Making install in fftw gfortran -c -o rism_nxtsec.o _rism_nxtsec.f Making install in fftw gfortran -c -O3 -mtune=generic -ffree-form -o blend.o _blend.f if [ "-L/usr/local/apps/amber/11-1.5/amber11/lib -ldrfftw -ldfftw" = '-lfftw2xf_gnu' ]; then\ cd /interfaces/fftw2xf && make lib \ compiler=gnu PRECISION=MKL_DOUBLE \ INSTALL_DIR=/usr/local/apps/amber/11-1.5/amber11/lib; \ else \ cd ../fftw-2.1.5 && make install; \ fi cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ pubfft.f > _pubfft.f make[2]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5' make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/fftw' make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/fftw' gfortran -c -O0 -ffree-form -o pubfft.o _pubfft.f Making install in fftw if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_1.lo -MD -MP -MF ".deps/fn_1.Tpo" \ -c -o fn_1.lo `test -f 'fn_1.c' || echo './'`fn_1.c; \ then mv ".deps/fn_1.Tpo" ".deps/fn_1.Plo"; \ else rm -f ".deps/fn_1.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_1.lo -MD -MP -MF ".deps/fn_1.Tpo" \ -c -o fn_1.lo `test -f 'fn_1.c' || echo './'`fn_1.c; \ then mv ".deps/fn_1.Tpo" ".deps/fn_1.Plo"; \ else rm -f ".deps/fn_1.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_2.lo -MD -MP -MF ".deps/fn_2.Tpo" \ -c -o fn_2.lo `test -f 'fn_2.c' || echo './'`fn_2.c; \ then mv ".deps/fn_2.Tpo" ".deps/fn_2.Plo"; \ else rm -f ".deps/fn_2.Tpo"; exit 1; \ fi make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/fftw' _pubfft.f:1648.29: CALL RFFTI1 (N,WSAVE(N+1),WSAVE(2*N+1)) 1 Warning: Type mismatch in argument 'ifac' at (1); passed REAL(8) to INTEGER(4) _pubfft.f:1726.46: CALL SINT1(N,X,WSAVE,WSAVE(IW1),WSAVE(IW2),WSAVE(IW3)) 1 Warning: Type mismatch in argument 'ifac' at (1); passed REAL(8) to INTEGER(4) if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_1.lo -MD -MP -MF ".deps/fn_1.Tpo" \ -c -o fn_1.lo `test -f 'fn_1.c' || echo './'`fn_1.c; \ then mv ".deps/fn_1.Tpo" ".deps/fn_1.Plo"; \ else rm -f ".deps/fn_1.Tpo"; exit 1; \ fi _pubfft.f:144.37: call cfftb1 (n,c,wsave,wsave(iw1),wsave(iw2)) 1 Warning: Type mismatch in argument 'ifac' at (1); passed REAL(8) to INTEGER(4) _pubfft.f:233.37: call cfftf1 (n,c,wsave,wsave(iw1),wsave(iw2)) 1 Warning: Type mismatch in argument 'ifac' at (1); passed REAL(8) to INTEGER(4) _pubfft.f:347.29: call cffti1 (n,wsave(iw1),wsave(iw2)) 1 Warning: Type mismatch in argument 'ifac' at (1); passed REAL(8) to INTEGER(4) _pubfft.f:1150.41: if ( isign == -1) call cfftf(n1,work,table(1,1)) 1 Warning: Type mismatch in argument 'c' at (1); passed COMPLEX(8) to REAL(8) _pubfft.f:1151.40: if ( isign == 1) call cfftb(n1,work,table(1,1)) 1 Warning: Type mismatch in argument 'c' at (1); passed COMPLEX(8) to REAL(8) _pubfft.f:1165.41: if ( isign == -1) call cfftf(n2,work,table(1,2)) 1 Warning: Type mismatch in argument 'c' at (1); passed COMPLEX(8) to REAL(8) _pubfft.f:1166.40: if ( isign == 1) call cfftb(n2,work,table(1,2)) 1 Warning: Type mismatch in argument 'c' at (1); passed COMPLEX(8) to REAL(8) _pubfft.f:1180.41: if ( isign == -1) call cfftf(n3,work,table(1,3)) 1 Warning: Type mismatch in argument 'c' at (1); passed COMPLEX(8) to REAL(8) _pubfft.f:1181.40: if ( isign == 1) call cfftb(n3,work,table(1,3)) 1 Warning: Type mismatch in argument 'c' at (1); passed COMPLEX(8) to REAL(8) if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_2.lo -MD -MP -MF ".deps/fn_2.Tpo" \ -c -o fn_2.lo `test -f 'fn_2.c' || echo './'`fn_2.c; \ then mv ".deps/fn_2.Tpo" ".deps/fn_2.Plo"; \ else rm -f ".deps/fn_2.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_1.lo -MD -MP -MF .deps/fn_1.Tpo -c fn_1.c -o fn_1.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_1.lo -MD -MP -MF .deps/fn_1.Tpo -c fn_1.c -o fn_1.o if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_3.lo -MD -MP -MF ".deps/fn_3.Tpo" \ -c -o fn_3.lo `test -f 'fn_3.c' || echo './'`fn_3.c; \ then mv ".deps/fn_3.Tpo" ".deps/fn_3.Plo"; \ else rm -f ".deps/fn_3.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_2.lo -MD -MP -MF .deps/fn_2.Tpo -c fn_2.c -o fn_2.o echo timestamp > fn_1.lo gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_1.lo -MD -MP -MF .deps/fn_1.Tpo -c fn_1.c -o fn_1.o cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ erfcfun.f > _erfcfun.f echo timestamp > fn_1.lo mv: cannot stat `.deps/fn_1.Tpo': No such file or directory make[3]: *** [fn_1.lo] Error 1 make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/fftw' make[2]: *** [install-recursive] Error 1 make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5' make[1]: *** [-ldrfftw] Error 2 make[1]: *** Waiting for unfinished jobs.... if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_4.lo -MD -MP -MF ".deps/fn_4.Tpo" \ -c -o fn_4.lo `test -f 'fn_4.c' || echo './'`fn_4.c; \ then mv ".deps/fn_4.Tpo" ".deps/fn_4.Plo"; \ else rm -f ".deps/fn_4.Tpo"; exit 1; \ fi gfortran -c -O3 -mtune=generic -ffree-form -o erfcfun.o _erfcfun.f echo timestamp > fn_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_3.lo -MD -MP -MF ".deps/fn_3.Tpo" \ -c -o fn_3.lo `test -f 'fn_3.c' || echo './'`fn_3.c; \ then mv ".deps/fn_3.Tpo" ".deps/fn_3.Plo"; \ else rm -f ".deps/fn_3.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_2.lo -MD -MP -MF .deps/fn_2.Tpo -c fn_2.c -o fn_2.o echo timestamp > fn_1.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_5.lo -MD -MP -MF ".deps/fn_5.Tpo" \ -c -o fn_5.lo `test -f 'fn_5.c' || echo './'`fn_5.c; \ then mv ".deps/fn_5.Tpo" ".deps/fn_5.Plo"; \ else rm -f ".deps/fn_5.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_3.lo -MD -MP -MF .deps/fn_3.Tpo -c fn_3.c -o fn_3.o if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_4.lo -MD -MP -MF ".deps/fn_4.Tpo" \ -c -o fn_4.lo `test -f 'fn_4.c' || echo './'`fn_4.c; \ then mv ".deps/fn_4.Tpo" ".deps/fn_4.Plo"; \ else rm -f ".deps/fn_4.Tpo"; exit 1; \ fi echo timestamp > fn_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_6.lo -MD -MP -MF ".deps/fn_6.Tpo" \ -c -o fn_6.lo `test -f 'fn_6.c' || echo './'`fn_6.c; \ then mv ".deps/fn_6.Tpo" ".deps/fn_6.Plo"; \ else rm -f ".deps/fn_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_4.lo -MD -MP -MF .deps/fn_4.Tpo -c fn_4.c -o fn_4.o echo timestamp > fn_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_5.lo -MD -MP -MF ".deps/fn_5.Tpo" \ -c -o fn_5.lo `test -f 'fn_5.c' || echo './'`fn_5.c; \ then mv ".deps/fn_5.Tpo" ".deps/fn_5.Plo"; \ else rm -f ".deps/fn_5.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_3.lo -MD -MP -MF .deps/fn_3.Tpo -c fn_3.c -o fn_3.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_5.lo -MD -MP -MF .deps/fn_5.Tpo -c fn_5.c -o fn_5.o echo timestamp > fn_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_6.lo -MD -MP -MF ".deps/fn_6.Tpo" \ -c -o fn_6.lo `test -f 'fn_6.c' || echo './'`fn_6.c; \ then mv ".deps/fn_6.Tpo" ".deps/fn_6.Plo"; \ else rm -f ".deps/fn_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_4.lo -MD -MP -MF .deps/fn_4.Tpo -c fn_4.c -o fn_4.o echo timestamp > fn_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_7.lo -MD -MP -MF ".deps/fn_7.Tpo" \ -c -o fn_7.lo `test -f 'fn_7.c' || echo './'`fn_7.c; \ then mv ".deps/fn_7.Tpo" ".deps/fn_7.Plo"; \ else rm -f ".deps/fn_7.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_6.lo -MD -MP -MF .deps/fn_6.Tpo -c fn_6.c -o fn_6.o echo timestamp > fn_5.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_8.lo -MD -MP -MF ".deps/fn_8.Tpo" \ -c -o fn_8.lo `test -f 'fn_8.c' || echo './'`fn_8.c; \ then mv ".deps/fn_8.Tpo" ".deps/fn_8.Plo"; \ else rm -f ".deps/fn_8.Tpo"; exit 1; \ fi echo timestamp > fn_4.lo gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_5.lo -MD -MP -MF .deps/fn_5.Tpo -c fn_5.c -o fn_5.o if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_7.lo -MD -MP -MF ".deps/fn_7.Tpo" \ -c -o fn_7.lo `test -f 'fn_7.c' || echo './'`fn_7.c; \ then mv ".deps/fn_7.Tpo" ".deps/fn_7.Plo"; \ else rm -f ".deps/fn_7.Tpo"; exit 1; \ fi echo timestamp > fn_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_8.lo -MD -MP -MF ".deps/fn_8.Tpo" \ -c -o fn_8.lo `test -f 'fn_8.c' || echo './'`fn_8.c; \ then mv ".deps/fn_8.Tpo" ".deps/fn_8.Plo"; \ else rm -f ".deps/fn_8.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_6.lo -MD -MP -MF .deps/fn_6.Tpo -c fn_6.c -o fn_6.o echo timestamp > fn_5.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_9.lo -MD -MP -MF ".deps/fn_9.Tpo" \ -c -o fn_9.lo `test -f 'fn_9.c' || echo './'`fn_9.c; \ then mv ".deps/fn_9.Tpo" ".deps/fn_9.Plo"; \ else rm -f ".deps/fn_9.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_7.lo -MD -MP -MF .deps/fn_7.Tpo -c fn_7.c -o fn_7.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_8.lo -MD -MP -MF .deps/fn_8.Tpo -c fn_8.c -o fn_8.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_7.lo -MD -MP -MF .deps/fn_7.Tpo -c fn_7.c -o fn_7.o echo timestamp > fn_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_9.lo -MD -MP -MF ".deps/fn_9.Tpo" \ -c -o fn_9.lo `test -f 'fn_9.c' || echo './'`fn_9.c; \ then mv ".deps/fn_9.Tpo" ".deps/fn_9.Plo"; \ else rm -f ".deps/fn_9.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_10.lo -MD -MP -MF ".deps/fn_10.Tpo" \ -c -o fn_10.lo `test -f 'fn_10.c' || echo './'`fn_10.c; \ then mv ".deps/fn_10.Tpo" ".deps/fn_10.Plo"; \ else rm -f ".deps/fn_10.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_8.lo -MD -MP -MF .deps/fn_8.Tpo -c fn_8.c -o fn_8.o echo timestamp > fn_7.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_10.lo -MD -MP -MF ".deps/fn_10.Tpo" \ -c -o fn_10.lo `test -f 'fn_10.c' || echo './'`fn_10.c; \ then mv ".deps/fn_10.Tpo" ".deps/fn_10.Plo"; \ else rm -f ".deps/fn_10.Tpo"; exit 1; \ fi echo timestamp > fn_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_11.lo -MD -MP -MF ".deps/fn_11.Tpo" \ -c -o fn_11.lo `test -f 'fn_11.c' || echo './'`fn_11.c; \ then mv ".deps/fn_11.Tpo" ".deps/fn_11.Plo"; \ else rm -f ".deps/fn_11.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_9.lo -MD -MP -MF .deps/fn_9.Tpo -c fn_9.c -o fn_9.o echo timestamp > fn_7.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_11.lo -MD -MP -MF ".deps/fn_11.Tpo" \ -c -o fn_11.lo `test -f 'fn_11.c' || echo './'`fn_11.c; \ then mv ".deps/fn_11.Tpo" ".deps/fn_11.Plo"; \ else rm -f ".deps/fn_11.Tpo"; exit 1; \ fi echo timestamp > fn_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_12.lo -MD -MP -MF ".deps/fn_12.Tpo" \ -c -o fn_12.lo `test -f 'fn_12.c' || echo './'`fn_12.c; \ then mv ".deps/fn_12.Tpo" ".deps/fn_12.Plo"; \ else rm -f ".deps/fn_12.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_9.lo -MD -MP -MF .deps/fn_9.Tpo -c fn_9.c -o fn_9.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_10.lo -MD -MP -MF .deps/fn_10.Tpo -c fn_10.c -o fn_10.o echo timestamp > fn_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_12.lo -MD -MP -MF ".deps/fn_12.Tpo" \ -c -o fn_12.lo `test -f 'fn_12.c' || echo './'`fn_12.c; \ then mv ".deps/fn_12.Tpo" ".deps/fn_12.Plo"; \ else rm -f ".deps/fn_12.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_10.lo -MD -MP -MF .deps/fn_10.Tpo -c fn_10.c -o fn_10.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_11.lo -MD -MP -MF .deps/fn_11.Tpo -c fn_11.c -o fn_11.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_11.lo -MD -MP -MF .deps/fn_11.Tpo -c fn_11.c -o fn_11.o echo timestamp > fn_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_13.lo -MD -MP -MF ".deps/fn_13.Tpo" \ -c -o fn_13.lo `test -f 'fn_13.c' || echo './'`fn_13.c; \ then mv ".deps/fn_13.Tpo" ".deps/fn_13.Plo"; \ else rm -f ".deps/fn_13.Tpo"; exit 1; \ fi echo timestamp > fn_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_14.lo -MD -MP -MF ".deps/fn_14.Tpo" \ -c -o fn_14.lo `test -f 'fn_14.c' || echo './'`fn_14.c; \ then mv ".deps/fn_14.Tpo" ".deps/fn_14.Plo"; \ else rm -f ".deps/fn_14.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_12.lo -MD -MP -MF .deps/fn_12.Tpo -c fn_12.c -o fn_12.o echo timestamp > fn_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_13.lo -MD -MP -MF ".deps/fn_13.Tpo" \ -c -o fn_13.lo `test -f 'fn_13.c' || echo './'`fn_13.c; \ then mv ".deps/fn_13.Tpo" ".deps/fn_13.Plo"; \ else rm -f ".deps/fn_13.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_12.lo -MD -MP -MF .deps/fn_12.Tpo -c fn_12.c -o fn_12.o echo timestamp > fn_11.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_14.lo -MD -MP -MF ".deps/fn_14.Tpo" \ -c -o fn_14.lo `test -f 'fn_14.c' || echo './'`fn_14.c; \ then mv ".deps/fn_14.Tpo" ".deps/fn_14.Plo"; \ else rm -f ".deps/fn_14.Tpo"; exit 1; \ fi echo timestamp > fn_11.lo echo timestamp > fn_12.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_15.lo -MD -MP -MF ".deps/fn_15.Tpo" \ -c -o fn_15.lo `test -f 'fn_15.c' || echo './'`fn_15.c; \ then mv ".deps/fn_15.Tpo" ".deps/fn_15.Plo"; \ else rm -f ".deps/fn_15.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_16.lo -MD -MP -MF ".deps/fn_16.Tpo" \ -c -o fn_16.lo `test -f 'fn_16.c' || echo './'`fn_16.c; \ then mv ".deps/fn_16.Tpo" ".deps/fn_16.Plo"; \ else rm -f ".deps/fn_16.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_13.lo -MD -MP -MF .deps/fn_13.Tpo -c fn_13.c -o fn_13.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_14.lo -MD -MP -MF .deps/fn_14.Tpo -c fn_14.c -o fn_14.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_13.lo -MD -MP -MF .deps/fn_13.Tpo -c fn_13.c -o fn_13.o echo timestamp > fn_12.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_15.lo -MD -MP -MF ".deps/fn_15.Tpo" \ -c -o fn_15.lo `test -f 'fn_15.c' || echo './'`fn_15.c; \ then mv ".deps/fn_15.Tpo" ".deps/fn_15.Plo"; \ else rm -f ".deps/fn_15.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_14.lo -MD -MP -MF .deps/fn_14.Tpo -c fn_14.c -o fn_14.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_15.lo -MD -MP -MF .deps/fn_15.Tpo -c fn_15.c -o fn_15.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_16.lo -MD -MP -MF .deps/fn_16.Tpo -c fn_16.c -o fn_16.o if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_16.lo -MD -MP -MF ".deps/fn_16.Tpo" \ -c -o fn_16.lo `test -f 'fn_16.c' || echo './'`fn_16.c; \ then mv ".deps/fn_16.Tpo" ".deps/fn_16.Plo"; \ else rm -f ".deps/fn_16.Tpo"; exit 1; \ fi echo timestamp > fn_14.lo echo timestamp > fn_13.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_32.lo -MD -MP -MF ".deps/fn_32.Tpo" \ -c -o fn_32.lo `test -f 'fn_32.c' || echo './'`fn_32.c; \ then mv ".deps/fn_32.Tpo" ".deps/fn_32.Plo"; \ else rm -f ".deps/fn_32.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_32.lo -MD -MP -MF ".deps/fn_32.Tpo" \ -c -o fn_32.lo `test -f 'fn_32.c' || echo './'`fn_32.c; \ then mv ".deps/fn_32.Tpo" ".deps/fn_32.Plo"; \ else rm -f ".deps/fn_32.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_15.lo -MD -MP -MF .deps/fn_15.Tpo -c fn_15.c -o fn_15.o echo timestamp > fn_13.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_64.lo -MD -MP -MF ".deps/fn_64.Tpo" \ -c -o fn_64.lo `test -f 'fn_64.c' || echo './'`fn_64.c; \ then mv ".deps/fn_64.Tpo" ".deps/fn_64.Plo"; \ else rm -f ".deps/fn_64.Tpo"; exit 1; \ fi echo timestamp > fn_14.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_2.lo -MD -MP -MF ".deps/ftw_2.Tpo" \ -c -o ftw_2.lo `test -f 'ftw_2.c' || echo './'`ftw_2.c; \ then mv ".deps/ftw_2.Tpo" ".deps/ftw_2.Plo"; \ else rm -f ".deps/ftw_2.Tpo"; exit 1; \ fi echo timestamp > fn_15.lo echo timestamp > fn_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_64.lo -MD -MP -MF ".deps/fn_64.Tpo" \ -c -o fn_64.lo `test -f 'fn_64.c' || echo './'`fn_64.c; \ then mv ".deps/fn_64.Tpo" ".deps/fn_64.Plo"; \ else rm -f ".deps/fn_64.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_2.lo -MD -MP -MF ".deps/ftw_2.Tpo" \ -c -o ftw_2.lo `test -f 'ftw_2.c' || echo './'`ftw_2.c; \ then mv ".deps/ftw_2.Tpo" ".deps/ftw_2.Plo"; \ else rm -f ".deps/ftw_2.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_32.lo -MD -MP -MF .deps/fn_32.Tpo -c fn_32.c -o fn_32.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_16.lo -MD -MP -MF .deps/fn_16.Tpo -c fn_16.c -o fn_16.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_32.lo -MD -MP -MF .deps/fn_32.Tpo -c fn_32.c -o fn_32.o echo timestamp > fn_15.lo gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_64.lo -MD -MP -MF .deps/fn_64.Tpo -c fn_64.c -o fn_64.o if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_3.lo -MD -MP -MF ".deps/ftw_3.Tpo" \ -c -o ftw_3.lo `test -f 'ftw_3.c' || echo './'`ftw_3.c; \ then mv ".deps/ftw_3.Tpo" ".deps/ftw_3.Plo"; \ else rm -f ".deps/ftw_3.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_2.lo -MD -MP -MF .deps/ftw_2.Tpo -c ftw_2.c -o ftw_2.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_2.lo -MD -MP -MF .deps/ftw_2.Tpo -c ftw_2.c -o ftw_2.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_64.lo -MD -MP -MF .deps/fn_64.Tpo -c fn_64.c -o fn_64.o echo timestamp > fn_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_4.lo -MD -MP -MF ".deps/ftw_4.Tpo" \ -c -o ftw_4.lo `test -f 'ftw_4.c' || echo './'`ftw_4.c; \ then mv ".deps/ftw_4.Tpo" ".deps/ftw_4.Plo"; \ else rm -f ".deps/ftw_4.Tpo"; exit 1; \ fi echo timestamp > ftw_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_5.lo -MD -MP -MF ".deps/ftw_5.Tpo" \ -c -o ftw_5.lo `test -f 'ftw_5.c' || echo './'`ftw_5.c; \ then mv ".deps/ftw_5.Tpo" ".deps/ftw_5.Plo"; \ else rm -f ".deps/ftw_5.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_3.lo -MD -MP -MF .deps/ftw_3.Tpo -c ftw_3.c -o ftw_3.o echo timestamp > ftw_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_6.lo -MD -MP -MF ".deps/ftw_6.Tpo" \ -c -o ftw_6.lo `test -f 'ftw_6.c' || echo './'`ftw_6.c; \ then mv ".deps/ftw_6.Tpo" ".deps/ftw_6.Plo"; \ else rm -f ".deps/ftw_6.Tpo"; exit 1; \ fi echo timestamp > ftw_3.lo echo timestamp > fn_32.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_3.lo -MD -MP -MF ".deps/ftw_3.Tpo" \ -c -o ftw_3.lo `test -f 'ftw_3.c' || echo './'`ftw_3.c; \ then mv ".deps/ftw_3.Tpo" ".deps/ftw_3.Plo"; \ else rm -f ".deps/ftw_3.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_7.lo -MD -MP -MF ".deps/ftw_7.Tpo" \ -c -o ftw_7.lo `test -f 'ftw_7.c' || echo './'`ftw_7.c; \ then mv ".deps/ftw_7.Tpo" ".deps/ftw_7.Plo"; \ else rm -f ".deps/ftw_7.Tpo"; exit 1; \ fi echo timestamp > fn_32.lo mv: cannot stat `.deps/fn_32.Tpo': No such file or directory gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_4.lo -MD -MP -MF .deps/ftw_4.Tpo -c ftw_4.c -o ftw_4.o make[3]: *** [fn_32.lo] Error 1 make[3]: *** Waiting for unfinished jobs.... if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_8.lo -MD -MP -MF ".deps/ftw_8.Tpo" \ -c -o ftw_8.lo `test -f 'ftw_8.c' || echo './'`ftw_8.c; \ then mv ".deps/ftw_8.Tpo" ".deps/ftw_8.Plo"; \ else rm -f ".deps/ftw_8.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_5.lo -MD -MP -MF .deps/ftw_5.Tpo -c ftw_5.c -o ftw_5.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_6.lo -MD -MP -MF .deps/ftw_6.Tpo -c ftw_6.c -o ftw_6.o echo timestamp > ftw_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_9.lo -MD -MP -MF ".deps/ftw_9.Tpo" \ -c -o ftw_9.lo `test -f 'ftw_9.c' || echo './'`ftw_9.c; \ then mv ".deps/ftw_9.Tpo" ".deps/ftw_9.Plo"; \ else rm -f ".deps/ftw_9.Tpo"; exit 1; \ fi echo timestamp > ftw_5.lo gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_3.lo -MD -MP -MF .deps/ftw_3.Tpo -c ftw_3.c -o ftw_3.o if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_10.lo -MD -MP -MF ".deps/ftw_10.Tpo" \ -c -o ftw_10.lo `test -f 'ftw_10.c' || echo './'`ftw_10.c; \ then mv ".deps/ftw_10.Tpo" ".deps/ftw_10.Plo"; \ else rm -f ".deps/ftw_10.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_7.lo -MD -MP -MF .deps/ftw_7.Tpo -c ftw_7.c -o ftw_7.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_8.lo -MD -MP -MF .deps/ftw_8.Tpo -c ftw_8.c -o ftw_8.o echo timestamp > ftw_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_16.lo -MD -MP -MF ".deps/ftw_16.Tpo" \ -c -o ftw_16.lo `test -f 'ftw_16.c' || echo './'`ftw_16.c; \ then mv ".deps/ftw_16.Tpo" ".deps/ftw_16.Plo"; \ else rm -f ".deps/ftw_16.Tpo"; exit 1; \ fi echo timestamp > ftw_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_32.lo -MD -MP -MF ".deps/ftw_32.Tpo" \ -c -o ftw_32.lo `test -f 'ftw_32.c' || echo './'`ftw_32.c; \ then mv ".deps/ftw_32.Tpo" ".deps/ftw_32.Plo"; \ else rm -f ".deps/ftw_32.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_9.lo -MD -MP -MF .deps/ftw_9.Tpo -c ftw_9.c -o ftw_9.o echo timestamp > ftw_7.lo gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_10.lo -MD -MP -MF .deps/ftw_10.Tpo -c ftw_10.c -o ftw_10.o if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_64.lo -MD -MP -MF ".deps/ftw_64.Tpo" \ -c -o ftw_64.lo `test -f 'ftw_64.c' || echo './'`ftw_64.c; \ then mv ".deps/ftw_64.Tpo" ".deps/ftw_64.Plo"; \ else rm -f ".deps/ftw_64.Tpo"; exit 1; \ fi echo timestamp > ftw_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_1.lo -MD -MP -MF ".deps/fni_1.Tpo" \ -c -o fni_1.lo `test -f 'fni_1.c' || echo './'`fni_1.c; \ then mv ".deps/fni_1.Tpo" ".deps/fni_1.Plo"; \ else rm -f ".deps/fni_1.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_16.lo -MD -MP -MF .deps/ftw_16.Tpo -c ftw_16.c -o ftw_16.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_32.lo -MD -MP -MF .deps/ftw_32.Tpo -c ftw_32.c -o ftw_32.o echo timestamp > ftw_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_2.lo -MD -MP -MF ".deps/fni_2.Tpo" \ -c -o fni_2.lo `test -f 'fni_2.c' || echo './'`fni_2.c; \ then mv ".deps/fni_2.Tpo" ".deps/fni_2.Plo"; \ else rm -f ".deps/fni_2.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_64.lo -MD -MP -MF .deps/ftw_64.Tpo -c ftw_64.c -o ftw_64.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_1.lo -MD -MP -MF .deps/fni_1.Tpo -c fni_1.c -o fni_1.o echo timestamp > ftw_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_3.lo -MD -MP -MF ".deps/fni_3.Tpo" \ -c -o fni_3.lo `test -f 'fni_3.c' || echo './'`fni_3.c; \ then mv ".deps/fni_3.Tpo" ".deps/fni_3.Plo"; \ else rm -f ".deps/fni_3.Tpo"; exit 1; \ fi echo timestamp > fn_64.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_4.lo -MD -MP -MF ".deps/fni_4.Tpo" \ -c -o fni_4.lo `test -f 'fni_4.c' || echo './'`fni_4.c; \ then mv ".deps/fni_4.Tpo" ".deps/fni_4.Plo"; \ else rm -f ".deps/fni_4.Tpo"; exit 1; \ fi echo timestamp > fni_1.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_5.lo -MD -MP -MF ".deps/fni_5.Tpo" \ -c -o fni_5.lo `test -f 'fni_5.c' || echo './'`fni_5.c; \ then mv ".deps/fni_5.Tpo" ".deps/fni_5.Plo"; \ else rm -f ".deps/fni_5.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_2.lo -MD -MP -MF .deps/fni_2.Tpo -c fni_2.c -o fni_2.o echo timestamp > fn_64.lo make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/fftw' make[2]: *** [install-recursive] Error 1 make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5' make[1]: *** [-ldfftw] Error 2 if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_6.lo -MD -MP -MF ".deps/fni_6.Tpo" \ -c -o fni_6.lo `test -f 'fni_6.c' || echo './'`fni_6.c; \ then mv ".deps/fni_6.Tpo" ".deps/fni_6.Plo"; \ else rm -f ".deps/fni_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_3.lo -MD -MP -MF .deps/fni_3.Tpo -c fni_3.c -o fni_3.o echo timestamp > ftw_16.lo echo timestamp > fni_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_7.lo -MD -MP -MF ".deps/fni_7.Tpo" \ -c -o fni_7.lo `test -f 'fni_7.c' || echo './'`fni_7.c; \ then mv ".deps/fni_7.Tpo" ".deps/fni_7.Plo"; \ else rm -f ".deps/fni_7.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_8.lo -MD -MP -MF ".deps/fni_8.Tpo" \ -c -o fni_8.lo `test -f 'fni_8.c' || echo './'`fni_8.c; \ then mv ".deps/fni_8.Tpo" ".deps/fni_8.Plo"; \ else rm -f ".deps/fni_8.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_4.lo -MD -MP -MF .deps/fni_4.Tpo -c fni_4.c -o fni_4.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_5.lo -MD -MP -MF .deps/fni_5.Tpo -c fni_5.c -o fni_5.o echo timestamp > fni_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_9.lo -MD -MP -MF ".deps/fni_9.Tpo" \ -c -o fni_9.lo `test -f 'fni_9.c' || echo './'`fni_9.c; \ then mv ".deps/fni_9.Tpo" ".deps/fni_9.Plo"; \ else rm -f ".deps/fni_9.Tpo"; exit 1; \ fi echo timestamp > fni_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_10.lo -MD -MP -MF ".deps/fni_10.Tpo" \ -c -o fni_10.lo `test -f 'fni_10.c' || echo './'`fni_10.c; \ then mv ".deps/fni_10.Tpo" ".deps/fni_10.Plo"; \ else rm -f ".deps/fni_10.Tpo"; exit 1; \ fi echo timestamp > fni_5.lo gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_6.lo -MD -MP -MF .deps/fni_6.Tpo -c fni_6.c -o fni_6.o if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_11.lo -MD -MP -MF ".deps/fni_11.Tpo" \ -c -o fni_11.lo `test -f 'fni_11.c' || echo './'`fni_11.c; \ then mv ".deps/fni_11.Tpo" ".deps/fni_11.Plo"; \ else rm -f ".deps/fni_11.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_8.lo -MD -MP -MF .deps/fni_8.Tpo -c fni_8.c -o fni_8.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_7.lo -MD -MP -MF .deps/fni_7.Tpo -c fni_7.c -o fni_7.o echo timestamp > fni_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_12.lo -MD -MP -MF ".deps/fni_12.Tpo" \ -c -o fni_12.lo `test -f 'fni_12.c' || echo './'`fni_12.c; \ then mv ".deps/fni_12.Tpo" ".deps/fni_12.Plo"; \ else rm -f ".deps/fni_12.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_9.lo -MD -MP -MF .deps/fni_9.Tpo -c fni_9.c -o fni_9.o echo timestamp > fni_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_13.lo -MD -MP -MF ".deps/fni_13.Tpo" \ -c -o fni_13.lo `test -f 'fni_13.c' || echo './'`fni_13.c; \ then mv ".deps/fni_13.Tpo" ".deps/fni_13.Plo"; \ else rm -f ".deps/fni_13.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_10.lo -MD -MP -MF .deps/fni_10.Tpo -c fni_10.c -o fni_10.o echo timestamp > fni_7.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_14.lo -MD -MP -MF ".deps/fni_14.Tpo" \ -c -o fni_14.lo `test -f 'fni_14.c' || echo './'`fni_14.c; \ then mv ".deps/fni_14.Tpo" ".deps/fni_14.Plo"; \ else rm -f ".deps/fni_14.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_11.lo -MD -MP -MF .deps/fni_11.Tpo -c fni_11.c -o fni_11.o echo timestamp > fni_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_15.lo -MD -MP -MF ".deps/fni_15.Tpo" \ -c -o fni_15.lo `test -f 'fni_15.c' || echo './'`fni_15.c; \ then mv ".deps/fni_15.Tpo" ".deps/fni_15.Plo"; \ else rm -f ".deps/fni_15.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_12.lo -MD -MP -MF .deps/fni_12.Tpo -c fni_12.c -o fni_12.o echo timestamp > fni_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_16.lo -MD -MP -MF ".deps/fni_16.Tpo" \ -c -o fni_16.lo `test -f 'fni_16.c' || echo './'`fni_16.c; \ then mv ".deps/fni_16.Tpo" ".deps/fni_16.Plo"; \ else rm -f ".deps/fni_16.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_13.lo -MD -MP -MF .deps/fni_13.Tpo -c fni_13.c -o fni_13.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_14.lo -MD -MP -MF .deps/fni_14.Tpo -c fni_14.c -o fni_14.o echo timestamp > fni_11.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_32.lo -MD -MP -MF ".deps/fni_32.Tpo" \ -c -o fni_32.lo `test -f 'fni_32.c' || echo './'`fni_32.c; \ then mv ".deps/fni_32.Tpo" ".deps/fni_32.Plo"; \ else rm -f ".deps/fni_32.Tpo"; exit 1; \ fi echo timestamp > fni_12.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_64.lo -MD -MP -MF ".deps/fni_64.Tpo" \ -c -o fni_64.lo `test -f 'fni_64.c' || echo './'`fni_64.c; \ then mv ".deps/fni_64.Tpo" ".deps/fni_64.Plo"; \ else rm -f ".deps/fni_64.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_15.lo -MD -MP -MF .deps/fni_15.Tpo -c fni_15.c -o fni_15.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_16.lo -MD -MP -MF .deps/fni_16.Tpo -c fni_16.c -o fni_16.o echo timestamp > ftw_32.lo echo timestamp > fni_13.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_2.lo -MD -MP -MF ".deps/ftwi_2.Tpo" \ -c -o ftwi_2.lo `test -f 'ftwi_2.c' || echo './'`ftwi_2.c; \ then mv ".deps/ftwi_2.Tpo" ".deps/ftwi_2.Plo"; \ else rm -f ".deps/ftwi_2.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_3.lo -MD -MP -MF ".deps/ftwi_3.Tpo" \ -c -o ftwi_3.lo `test -f 'ftwi_3.c' || echo './'`ftwi_3.c; \ then mv ".deps/ftwi_3.Tpo" ".deps/ftwi_3.Plo"; \ else rm -f ".deps/ftwi_3.Tpo"; exit 1; \ fi echo timestamp > fni_14.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_4.lo -MD -MP -MF ".deps/ftwi_4.Tpo" \ -c -o ftwi_4.lo `test -f 'ftwi_4.c' || echo './'`ftwi_4.c; \ then mv ".deps/ftwi_4.Tpo" ".deps/ftwi_4.Plo"; \ else rm -f ".deps/ftwi_4.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_32.lo -MD -MP -MF .deps/fni_32.Tpo -c fni_32.c -o fni_32.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_64.lo -MD -MP -MF .deps/fni_64.Tpo -c fni_64.c -o fni_64.o echo timestamp > fni_15.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_5.lo -MD -MP -MF ".deps/ftwi_5.Tpo" \ -c -o ftwi_5.lo `test -f 'ftwi_5.c' || echo './'`ftwi_5.c; \ then mv ".deps/ftwi_5.Tpo" ".deps/ftwi_5.Plo"; \ else rm -f ".deps/ftwi_5.Tpo"; exit 1; \ fi echo timestamp > fni_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_6.lo -MD -MP -MF ".deps/ftwi_6.Tpo" \ -c -o ftwi_6.lo `test -f 'ftwi_6.c' || echo './'`ftwi_6.c; \ then mv ".deps/ftwi_6.Tpo" ".deps/ftwi_6.Plo"; \ else rm -f ".deps/ftwi_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_3.lo -MD -MP -MF .deps/ftwi_3.Tpo -c ftwi_3.c -o ftwi_3.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_2.lo -MD -MP -MF .deps/ftwi_2.Tpo -c ftwi_2.c -o ftwi_2.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_4.lo -MD -MP -MF .deps/ftwi_4.Tpo -c ftwi_4.c -o ftwi_4.o echo timestamp > ftwi_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_7.lo -MD -MP -MF ".deps/ftwi_7.Tpo" \ -c -o ftwi_7.lo `test -f 'ftwi_7.c' || echo './'`ftwi_7.c; \ then mv ".deps/ftwi_7.Tpo" ".deps/ftwi_7.Plo"; \ else rm -f ".deps/ftwi_7.Tpo"; exit 1; \ fi echo timestamp > ftwi_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_8.lo -MD -MP -MF ".deps/ftwi_8.Tpo" \ -c -o ftwi_8.lo `test -f 'ftwi_8.c' || echo './'`ftwi_8.c; \ then mv ".deps/ftwi_8.Tpo" ".deps/ftwi_8.Plo"; \ else rm -f ".deps/ftwi_8.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_5.lo -MD -MP -MF .deps/ftwi_5.Tpo -c ftwi_5.c -o ftwi_5.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_6.lo -MD -MP -MF .deps/ftwi_6.Tpo -c ftwi_6.c -o ftwi_6.o echo timestamp > ftwi_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_9.lo -MD -MP -MF ".deps/ftwi_9.Tpo" \ -c -o ftwi_9.lo `test -f 'ftwi_9.c' || echo './'`ftwi_9.c; \ then mv ".deps/ftwi_9.Tpo" ".deps/ftwi_9.Plo"; \ else rm -f ".deps/ftwi_9.Tpo"; exit 1; \ fi echo timestamp > fni_32.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_10.lo -MD -MP -MF ".deps/ftwi_10.Tpo" \ -c -o ftwi_10.lo `test -f 'ftwi_10.c' || echo './'`ftwi_10.c; \ then mv ".deps/ftwi_10.Tpo" ".deps/ftwi_10.Plo"; \ else rm -f ".deps/ftwi_10.Tpo"; exit 1; \ fi echo timestamp > ftwi_5.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_16.lo -MD -MP -MF ".deps/ftwi_16.Tpo" \ -c -o ftwi_16.lo `test -f 'ftwi_16.c' || echo './'`ftwi_16.c; \ then mv ".deps/ftwi_16.Tpo" ".deps/ftwi_16.Plo"; \ else rm -f ".deps/ftwi_16.Tpo"; exit 1; \ fi echo timestamp > ftwi_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_32.lo -MD -MP -MF ".deps/ftwi_32.Tpo" \ -c -o ftwi_32.lo `test -f 'ftwi_32.c' || echo './'`ftwi_32.c; \ then mv ".deps/ftwi_32.Tpo" ".deps/ftwi_32.Plo"; \ else rm -f ".deps/ftwi_32.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_7.lo -MD -MP -MF .deps/ftwi_7.Tpo -c ftwi_7.c -o ftwi_7.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_8.lo -MD -MP -MF .deps/ftwi_8.Tpo -c ftwi_8.c -o ftwi_8.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_9.lo -MD -MP -MF .deps/ftwi_9.Tpo -c ftwi_9.c -o ftwi_9.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_10.lo -MD -MP -MF .deps/ftwi_10.Tpo -c ftwi_10.c -o ftwi_10.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_16.lo -MD -MP -MF .deps/ftwi_16.Tpo -c ftwi_16.c -o ftwi_16.o echo timestamp > ftwi_7.lo echo timestamp > ftwi_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_64.lo -MD -MP -MF ".deps/ftwi_64.Tpo" \ -c -o ftwi_64.lo `test -f 'ftwi_64.c' || echo './'`ftwi_64.c; \ then mv ".deps/ftwi_64.Tpo" ".deps/ftwi_64.Plo"; \ else rm -f ".deps/ftwi_64.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT timer.lo -MD -MP -MF ".deps/timer.Tpo" \ -c -o timer.lo `test -f 'timer.c' || echo './'`timer.c; \ then mv ".deps/timer.Tpo" ".deps/timer.Plo"; \ else rm -f ".deps/timer.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_32.lo -MD -MP -MF .deps/ftwi_32.Tpo -c ftwi_32.c -o ftwi_32.o echo timestamp > ftwi_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT config.lo -MD -MP -MF ".deps/config.Tpo" \ -c -o config.lo `test -f 'config.c' || echo './'`config.c; \ then mv ".deps/config.Tpo" ".deps/config.Plo"; \ else rm -f ".deps/config.Tpo"; exit 1; \ fi echo timestamp > ftwi_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT planner.lo -MD -MP -MF ".deps/planner.Tpo" \ -c -o planner.lo `test -f 'planner.c' || echo './'`planner.c; \ then mv ".deps/planner.Tpo" ".deps/planner.Plo"; \ else rm -f ".deps/planner.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_64.lo -MD -MP -MF .deps/ftwi_64.Tpo -c ftwi_64.c -o ftwi_64.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT timer.lo -MD -MP -MF .deps/timer.Tpo -c timer.c -o timer.o echo timestamp > ftw_64.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT twiddle.lo -MD -MP -MF ".deps/twiddle.Tpo" \ -c -o twiddle.lo `test -f 'twiddle.c' || echo './'`twiddle.c; \ then mv ".deps/twiddle.Tpo" ".deps/twiddle.Plo"; \ else rm -f ".deps/twiddle.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT config.lo -MD -MP -MF .deps/config.Tpo -c config.c -o config.o echo timestamp > timer.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT executor.lo -MD -MP -MF ".deps/executor.Tpo" \ -c -o executor.lo `test -f 'executor.c' || echo './'`executor.c; \ then mv ".deps/executor.Tpo" ".deps/executor.Plo"; \ else rm -f ".deps/executor.Tpo"; exit 1; \ fi echo timestamp > ftwi_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT generic.lo -MD -MP -MF ".deps/generic.Tpo" \ -c -o generic.lo `test -f 'generic.c' || echo './'`generic.c; \ then mv ".deps/generic.Tpo" ".deps/generic.Plo"; \ else rm -f ".deps/generic.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT planner.lo -MD -MP -MF .deps/planner.Tpo -c planner.c -o planner.o echo timestamp > config.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fftwnd.lo -MD -MP -MF ".deps/fftwnd.Tpo" \ -c -o fftwnd.lo `test -f 'fftwnd.c' || echo './'`fftwnd.c; \ then mv ".deps/fftwnd.Tpo" ".deps/fftwnd.Plo"; \ else rm -f ".deps/fftwnd.Tpo"; exit 1; \ fi echo timestamp > fni_64.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT malloc.lo -MD -MP -MF ".deps/malloc.Tpo" \ -c -o malloc.lo `test -f 'malloc.c' || echo './'`malloc.c; \ then mv ".deps/malloc.Tpo" ".deps/malloc.Plo"; \ else rm -f ".deps/malloc.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT twiddle.lo -MD -MP -MF .deps/twiddle.Tpo -c twiddle.c -o twiddle.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT executor.lo -MD -MP -MF .deps/executor.Tpo -c executor.c -o executor.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT generic.lo -MD -MP -MF .deps/generic.Tpo -c generic.c -o generic.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fftwnd.lo -MD -MP -MF .deps/fftwnd.Tpo -c fftwnd.c -o fftwnd.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT malloc.lo -MD -MP -MF .deps/malloc.Tpo -c malloc.c -o malloc.o echo timestamp > twiddle.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT wisdom.lo -MD -MP -MF ".deps/wisdom.Tpo" \ -c -o wisdom.lo `test -f 'wisdom.c' || echo './'`wisdom.c; \ then mv ".deps/wisdom.Tpo" ".deps/wisdom.Plo"; \ else rm -f ".deps/wisdom.Tpo"; exit 1; \ fi echo timestamp > generic.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT wisdomio.lo -MD -MP -MF ".deps/wisdomio.Tpo" \ -c -o wisdomio.lo `test -f 'wisdomio.c' || echo './'`wisdomio.c; \ then mv ".deps/wisdomio.Tpo" ".deps/wisdomio.Plo"; \ else rm -f ".deps/wisdomio.Tpo"; exit 1; \ fi echo timestamp > malloc.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT putils.lo -MD -MP -MF ".deps/putils.Tpo" \ -c -o putils.lo `test -f 'putils.c' || echo './'`putils.c; \ then mv ".deps/putils.Tpo" ".deps/putils.Plo"; \ else rm -f ".deps/putils.Tpo"; exit 1; \ fi echo timestamp > executor.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rader.lo -MD -MP -MF ".deps/rader.Tpo" \ -c -o rader.lo `test -f 'rader.c' || echo './'`rader.c; \ then mv ".deps/rader.Tpo" ".deps/rader.Plo"; \ else rm -f ".deps/rader.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT wisdom.lo -MD -MP -MF .deps/wisdom.Tpo -c wisdom.c -o wisdom.o echo timestamp > planner.lo gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT wisdomio.lo -MD -MP -MF .deps/wisdomio.Tpo -c wisdomio.c -o wisdomio.o if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fftwf77.lo -MD -MP -MF ".deps/fftwf77.Tpo" \ -c -o fftwf77.lo `test -f 'fftwf77.c' || echo './'`fftwf77.c; \ then mv ".deps/fftwf77.Tpo" ".deps/fftwf77.Plo"; \ else rm -f ".deps/fftwf77.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT putils.lo -MD -MP -MF .deps/putils.Tpo -c putils.c -o putils.o gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rader.lo -MD -MP -MF .deps/rader.Tpo -c rader.c -o rader.o echo timestamp > wisdomio.lo echo timestamp > ftwi_32.lo rm -f dfftw.h sed 's/\"fftw/\"dfftw/g;s/\"rfftw/\"drfftw/g' ./fftw.h > dfftw.h gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fftwf77.lo -MD -MP -MF .deps/fftwf77.Tpo -c fftwf77.c -o fftwf77.o echo timestamp > wisdom.lo echo timestamp > fftwf77.lo echo timestamp > putils.lo echo timestamp > rader.lo echo timestamp > fftwnd.lo echo timestamp > ftwi_64.lo /bin/sh ../libtool --mode=link gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -o libdfftw.la -rpath /usr/local/apps/amber/11-1.5/amber11/lib64 -version-info 2:7:0 fn_1.lo fn_2.lo fn_3.lo fn_4.lo fn_5.lo fn_6.lo fn_7.lo fn_8.lo fn_9.lo fn_10.lo fn_11.lo fn_12.lo fn_13.lo fn_14.lo fn_15.lo fn_16.lo fn_32.lo fn_64.lo ftw_2.lo ftw_3.lo ftw_4.lo ftw_5.lo ftw_6.lo ftw_7.lo ftw_8.lo ftw_9.lo ftw_10.lo ftw_16.lo ftw_32.lo ftw_64.lo fni_1.lo fni_2.lo fni_3.lo fni_4.lo fni_5.lo fni_6.lo fni_7.lo fni_8.lo fni_9.lo fni_10.lo fni_11.lo fni_12.lo fni_13.lo fni_14.lo fni_15.lo fni_16.lo fni_32.lo fni_64.lo ftwi_2.lo ftwi_3.lo ftwi_4.lo ftwi_5.lo ftwi_6.lo ftwi_7.lo ftwi_8.lo ftwi_9.lo ftwi_10.lo ftwi_16.lo ftwi_32.lo ftwi_64.lo timer.lo config.lo planner.lo twiddle.lo executor.lo generic.lo fftwnd.lo malloc.lo wisdom.lo wisdomio.lo putils.lo rader.lo fftwf77.lo -lm mkdir .libs rm -fr .libs/libdfftw.la .libs/libdfftw.* .libs/libdfftw.* ar cru .libs/libdfftw.a fn_1.o fn_2.o fn_3.o fn_4.o fn_5.o fn_6.o fn_7.o fn_8.o fn_9.o fn_10.o fn_11.o fn_12.o fn_13.o fn_14.o fn_15.o fn_16.o fn_32.o fn_64.o ftw_2.o ftw_3.o ftw_4.o ftw_5.o ftw_6.o ftw_7.o ftw_8.o ftw_9.o ftw_10.o ftw_16.o ftw_32.o ftw_64.o fni_1.o fni_2.o fni_3.o fni_4.o fni_5.o fni_6.o fni_7.o fni_8.o fni_9.o fni_10.o fni_11.o fni_12.o fni_13.o fni_14.o fni_15.o fni_16.o fni_32.o fni_64.o ftwi_2.o ftwi_3.o ftwi_4.o ftwi_5.o ftwi_6.o ftwi_7.o ftwi_8.o ftwi_9.o ftwi_10.o ftwi_16.o ftwi_32.o ftwi_64.o timer.o config.o planner.o twiddle.o executor.o generic.o fftwnd.o malloc.o wisdom.o wisdomio.o putils.o rader.o fftwf77.o ranlib .libs/libdfftw.a creating libdfftw.la (cd .libs && rm -f libdfftw.la && ln -s ../libdfftw.la libdfftw.la) make[4]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/fftw' /bin/sh ../mkinstalldirs /usr/local/apps/amber/11-1.5/amber11/lib64 /bin/sh ../mkinstalldirs /usr/local/apps/amber/11-1.5/amber11/include /bin/sh ../libtool --mode=install /usr/bin/install -c libdfftw.la /usr/local/apps/amber/11-1.5/amber11/lib64/libdfftw.la /usr/bin/install -c -m 644 dfftw.h /usr/local/apps/amber/11-1.5/amber11/include/dfftw.h /usr/bin/install -c .libs/libdfftw.lai /usr/local/apps/amber/11-1.5/amber11/lib64/libdfftw.la /usr/bin/install -c .libs/libdfftw.a /usr/local/apps/amber/11-1.5/amber11/lib64/libdfftw.a ranlib /usr/local/apps/amber/11-1.5/amber11/lib64/libdfftw.a chmod 644 /usr/local/apps/amber/11-1.5/amber11/lib64/libdfftw.a PATH="$PATH:/sbin" ldconfig -n /usr/local/apps/amber/11-1.5/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /usr/local/apps/amber/11-1.5/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[4]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/fftw' make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/fftw' Making install in rfftw make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/rfftw' if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_1.lo -MD -MP -MF ".deps/frc_1.Tpo" \ -c -o frc_1.lo `test -f 'frc_1.c' || echo './'`frc_1.c; \ then mv ".deps/frc_1.Tpo" ".deps/frc_1.Plo"; \ else rm -f ".deps/frc_1.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_2.lo -MD -MP -MF ".deps/frc_2.Tpo" \ -c -o frc_2.lo `test -f 'frc_2.c' || echo './'`frc_2.c; \ then mv ".deps/frc_2.Tpo" ".deps/frc_2.Plo"; \ else rm -f ".deps/frc_2.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_3.lo -MD -MP -MF ".deps/frc_3.Tpo" \ -c -o frc_3.lo `test -f 'frc_3.c' || echo './'`frc_3.c; \ then mv ".deps/frc_3.Tpo" ".deps/frc_3.Plo"; \ else rm -f ".deps/frc_3.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_4.lo -MD -MP -MF ".deps/frc_4.Tpo" \ -c -o frc_4.lo `test -f 'frc_4.c' || echo './'`frc_4.c; \ then mv ".deps/frc_4.Tpo" ".deps/frc_4.Plo"; \ else rm -f ".deps/frc_4.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_5.lo -MD -MP -MF ".deps/frc_5.Tpo" \ -c -o frc_5.lo `test -f 'frc_5.c' || echo './'`frc_5.c; \ then mv ".deps/frc_5.Tpo" ".deps/frc_5.Plo"; \ else rm -f ".deps/frc_5.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_6.lo -MD -MP -MF ".deps/frc_6.Tpo" \ -c -o frc_6.lo `test -f 'frc_6.c' || echo './'`frc_6.c; \ then mv ".deps/frc_6.Tpo" ".deps/frc_6.Plo"; \ else rm -f ".deps/frc_6.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_7.lo -MD -MP -MF ".deps/frc_7.Tpo" \ -c -o frc_7.lo `test -f 'frc_7.c' || echo './'`frc_7.c; \ then mv ".deps/frc_7.Tpo" ".deps/frc_7.Plo"; \ else rm -f ".deps/frc_7.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_8.lo -MD -MP -MF ".deps/frc_8.Tpo" \ -c -o frc_8.lo `test -f 'frc_8.c' || echo './'`frc_8.c; \ then mv ".deps/frc_8.Tpo" ".deps/frc_8.Plo"; \ else rm -f ".deps/frc_8.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_5.lo -MD -MP -MF .deps/frc_5.Tpo -c frc_5.c -o frc_5.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_6.lo -MD -MP -MF .deps/frc_6.Tpo -c frc_6.c -o frc_6.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_2.lo -MD -MP -MF .deps/frc_2.Tpo -c frc_2.c -o frc_2.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_3.lo -MD -MP -MF .deps/frc_3.Tpo -c frc_3.c -o frc_3.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_7.lo -MD -MP -MF .deps/frc_7.Tpo -c frc_7.c -o frc_7.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_8.lo -MD -MP -MF .deps/frc_8.Tpo -c frc_8.c -o frc_8.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_1.lo -MD -MP -MF .deps/frc_1.Tpo -c frc_1.c -o frc_1.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_4.lo -MD -MP -MF .deps/frc_4.Tpo -c frc_4.c -o frc_4.o echo timestamp > frc_1.lo echo timestamp > frc_5.lo echo timestamp > frc_2.lo echo timestamp > frc_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_9.lo -MD -MP -MF ".deps/frc_9.Tpo" \ -c -o frc_9.lo `test -f 'frc_9.c' || echo './'`frc_9.c; \ then mv ".deps/frc_9.Tpo" ".deps/frc_9.Plo"; \ else rm -f ".deps/frc_9.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_10.lo -MD -MP -MF ".deps/frc_10.Tpo" \ -c -o frc_10.lo `test -f 'frc_10.c' || echo './'`frc_10.c; \ then mv ".deps/frc_10.Tpo" ".deps/frc_10.Plo"; \ else rm -f ".deps/frc_10.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_11.lo -MD -MP -MF ".deps/frc_11.Tpo" \ -c -o frc_11.lo `test -f 'frc_11.c' || echo './'`frc_11.c; \ then mv ".deps/frc_11.Tpo" ".deps/frc_11.Plo"; \ else rm -f ".deps/frc_11.Tpo"; exit 1; \ fi echo timestamp > frc_6.lo echo timestamp > frc_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_12.lo -MD -MP -MF ".deps/frc_12.Tpo" \ -c -o frc_12.lo `test -f 'frc_12.c' || echo './'`frc_12.c; \ then mv ".deps/frc_12.Tpo" ".deps/frc_12.Plo"; \ else rm -f ".deps/frc_12.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_13.lo -MD -MP -MF ".deps/frc_13.Tpo" \ -c -o frc_13.lo `test -f 'frc_13.c' || echo './'`frc_13.c; \ then mv ".deps/frc_13.Tpo" ".deps/frc_13.Plo"; \ else rm -f ".deps/frc_13.Tpo"; exit 1; \ fi echo timestamp > frc_7.lo echo timestamp > frc_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_14.lo -MD -MP -MF ".deps/frc_14.Tpo" \ -c -o frc_14.lo `test -f 'frc_14.c' || echo './'`frc_14.c; \ then mv ".deps/frc_14.Tpo" ".deps/frc_14.Plo"; \ else rm -f ".deps/frc_14.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_15.lo -MD -MP -MF ".deps/frc_15.Tpo" \ -c -o frc_15.lo `test -f 'frc_15.c' || echo './'`frc_15.c; \ then mv ".deps/frc_15.Tpo" ".deps/frc_15.Plo"; \ else rm -f ".deps/frc_15.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_16.lo -MD -MP -MF ".deps/frc_16.Tpo" \ -c -o frc_16.lo `test -f 'frc_16.c' || echo './'`frc_16.c; \ then mv ".deps/frc_16.Tpo" ".deps/frc_16.Plo"; \ else rm -f ".deps/frc_16.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_10.lo -MD -MP -MF .deps/frc_10.Tpo -c frc_10.c -o frc_10.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_9.lo -MD -MP -MF .deps/frc_9.Tpo -c frc_9.c -o frc_9.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_12.lo -MD -MP -MF .deps/frc_12.Tpo -c frc_12.c -o frc_12.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_13.lo -MD -MP -MF .deps/frc_13.Tpo -c frc_13.c -o frc_13.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_16.lo -MD -MP -MF .deps/frc_16.Tpo -c frc_16.c -o frc_16.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_14.lo -MD -MP -MF .deps/frc_14.Tpo -c frc_14.c -o frc_14.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_15.lo -MD -MP -MF .deps/frc_15.Tpo -c frc_15.c -o frc_15.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_11.lo -MD -MP -MF .deps/frc_11.Tpo -c frc_11.c -o frc_11.o echo timestamp > frc_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_32.lo -MD -MP -MF ".deps/frc_32.Tpo" \ -c -o frc_32.lo `test -f 'frc_32.c' || echo './'`frc_32.c; \ then mv ".deps/frc_32.Tpo" ".deps/frc_32.Plo"; \ else rm -f ".deps/frc_32.Tpo"; exit 1; \ fi echo timestamp > frc_12.lo echo timestamp > frc_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_64.lo -MD -MP -MF ".deps/frc_64.Tpo" \ -c -o frc_64.lo `test -f 'frc_64.c' || echo './'`frc_64.c; \ then mv ".deps/frc_64.Tpo" ".deps/frc_64.Plo"; \ else rm -f ".deps/frc_64.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_128.lo -MD -MP -MF ".deps/frc_128.Tpo" \ -c -o frc_128.lo `test -f 'frc_128.c' || echo './'`frc_128.c; \ then mv ".deps/frc_128.Tpo" ".deps/frc_128.Plo"; \ else rm -f ".deps/frc_128.Tpo"; exit 1; \ fi echo timestamp > frc_16.lo echo timestamp > frc_14.lo echo timestamp > frc_11.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_2.lo -MD -MP -MF ".deps/fhf_2.Tpo" \ -c -o fhf_2.lo `test -f 'fhf_2.c' || echo './'`fhf_2.c; \ then mv ".deps/fhf_2.Tpo" ".deps/fhf_2.Plo"; \ else rm -f ".deps/fhf_2.Tpo"; exit 1; \ fi echo timestamp > frc_13.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_3.lo -MD -MP -MF ".deps/fhf_3.Tpo" \ -c -o fhf_3.lo `test -f 'fhf_3.c' || echo './'`fhf_3.c; \ then mv ".deps/fhf_3.Tpo" ".deps/fhf_3.Plo"; \ else rm -f ".deps/fhf_3.Tpo"; exit 1; \ fi echo timestamp > frc_15.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_4.lo -MD -MP -MF ".deps/fhf_4.Tpo" \ -c -o fhf_4.lo `test -f 'fhf_4.c' || echo './'`fhf_4.c; \ then mv ".deps/fhf_4.Tpo" ".deps/fhf_4.Plo"; \ else rm -f ".deps/fhf_4.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_5.lo -MD -MP -MF ".deps/fhf_5.Tpo" \ -c -o fhf_5.lo `test -f 'fhf_5.c' || echo './'`fhf_5.c; \ then mv ".deps/fhf_5.Tpo" ".deps/fhf_5.Plo"; \ else rm -f ".deps/fhf_5.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_6.lo -MD -MP -MF ".deps/fhf_6.Tpo" \ -c -o fhf_6.lo `test -f 'fhf_6.c' || echo './'`fhf_6.c; \ then mv ".deps/fhf_6.Tpo" ".deps/fhf_6.Plo"; \ else rm -f ".deps/fhf_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_32.lo -MD -MP -MF .deps/frc_32.Tpo -c frc_32.c -o frc_32.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_64.lo -MD -MP -MF .deps/frc_64.Tpo -c frc_64.c -o frc_64.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_128.lo -MD -MP -MF .deps/frc_128.Tpo -c frc_128.c -o frc_128.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_3.lo -MD -MP -MF .deps/fhf_3.Tpo -c fhf_3.c -o fhf_3.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_2.lo -MD -MP -MF .deps/fhf_2.Tpo -c fhf_2.c -o fhf_2.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_5.lo -MD -MP -MF .deps/fhf_5.Tpo -c fhf_5.c -o fhf_5.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_4.lo -MD -MP -MF .deps/fhf_4.Tpo -c fhf_4.c -o fhf_4.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_6.lo -MD -MP -MF .deps/fhf_6.Tpo -c fhf_6.c -o fhf_6.o echo timestamp > fhf_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_7.lo -MD -MP -MF ".deps/fhf_7.Tpo" \ -c -o fhf_7.lo `test -f 'fhf_7.c' || echo './'`fhf_7.c; \ then mv ".deps/fhf_7.Tpo" ".deps/fhf_7.Plo"; \ else rm -f ".deps/fhf_7.Tpo"; exit 1; \ fi echo timestamp > fhf_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_8.lo -MD -MP -MF ".deps/fhf_8.Tpo" \ -c -o fhf_8.lo `test -f 'fhf_8.c' || echo './'`fhf_8.c; \ then mv ".deps/fhf_8.Tpo" ".deps/fhf_8.Plo"; \ else rm -f ".deps/fhf_8.Tpo"; exit 1; \ fi echo timestamp > fhf_4.lo echo timestamp > frc_32.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_9.lo -MD -MP -MF ".deps/fhf_9.Tpo" \ -c -o fhf_9.lo `test -f 'fhf_9.c' || echo './'`fhf_9.c; \ then mv ".deps/fhf_9.Tpo" ".deps/fhf_9.Plo"; \ else rm -f ".deps/fhf_9.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_10.lo -MD -MP -MF ".deps/fhf_10.Tpo" \ -c -o fhf_10.lo `test -f 'fhf_10.c' || echo './'`fhf_10.c; \ then mv ".deps/fhf_10.Tpo" ".deps/fhf_10.Plo"; \ else rm -f ".deps/fhf_10.Tpo"; exit 1; \ fi echo timestamp > fhf_5.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_16.lo -MD -MP -MF ".deps/fhf_16.Tpo" \ -c -o fhf_16.lo `test -f 'fhf_16.c' || echo './'`fhf_16.c; \ then mv ".deps/fhf_16.Tpo" ".deps/fhf_16.Plo"; \ else rm -f ".deps/fhf_16.Tpo"; exit 1; \ fi echo timestamp > fhf_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_32.lo -MD -MP -MF ".deps/fhf_32.Tpo" \ -c -o fhf_32.lo `test -f 'fhf_32.c' || echo './'`fhf_32.c; \ then mv ".deps/fhf_32.Tpo" ".deps/fhf_32.Plo"; \ else rm -f ".deps/fhf_32.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_7.lo -MD -MP -MF .deps/fhf_7.Tpo -c fhf_7.c -o fhf_7.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_8.lo -MD -MP -MF .deps/fhf_8.Tpo -c fhf_8.c -o fhf_8.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_9.lo -MD -MP -MF .deps/fhf_9.Tpo -c fhf_9.c -o fhf_9.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_10.lo -MD -MP -MF .deps/fhf_10.Tpo -c fhf_10.c -o fhf_10.o echo timestamp > frc_64.lo gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_16.lo -MD -MP -MF .deps/fhf_16.Tpo -c fhf_16.c -o fhf_16.o if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_1.lo -MD -MP -MF ".deps/fcr_1.Tpo" \ -c -o fcr_1.lo `test -f 'fcr_1.c' || echo './'`fcr_1.c; \ then mv ".deps/fcr_1.Tpo" ".deps/fcr_1.Plo"; \ else rm -f ".deps/fcr_1.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_32.lo -MD -MP -MF .deps/fhf_32.Tpo -c fhf_32.c -o fhf_32.o echo timestamp > fhf_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_2.lo -MD -MP -MF ".deps/fcr_2.Tpo" \ -c -o fcr_2.lo `test -f 'fcr_2.c' || echo './'`fcr_2.c; \ then mv ".deps/fcr_2.Tpo" ".deps/fcr_2.Plo"; \ else rm -f ".deps/fcr_2.Tpo"; exit 1; \ fi echo timestamp > fhf_7.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_3.lo -MD -MP -MF ".deps/fcr_3.Tpo" \ -c -o fcr_3.lo `test -f 'fcr_3.c' || echo './'`fcr_3.c; \ then mv ".deps/fcr_3.Tpo" ".deps/fcr_3.Plo"; \ else rm -f ".deps/fcr_3.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_1.lo -MD -MP -MF .deps/fcr_1.Tpo -c fcr_1.c -o fcr_1.o echo timestamp > fhf_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_4.lo -MD -MP -MF ".deps/fcr_4.Tpo" \ -c -o fcr_4.lo `test -f 'fcr_4.c' || echo './'`fcr_4.c; \ then mv ".deps/fcr_4.Tpo" ".deps/fcr_4.Plo"; \ else rm -f ".deps/fcr_4.Tpo"; exit 1; \ fi echo timestamp > fcr_1.lo echo timestamp > fhf_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_5.lo -MD -MP -MF ".deps/fcr_5.Tpo" \ -c -o fcr_5.lo `test -f 'fcr_5.c' || echo './'`fcr_5.c; \ then mv ".deps/fcr_5.Tpo" ".deps/fcr_5.Plo"; \ else rm -f ".deps/fcr_5.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_6.lo -MD -MP -MF ".deps/fcr_6.Tpo" \ -c -o fcr_6.lo `test -f 'fcr_6.c' || echo './'`fcr_6.c; \ then mv ".deps/fcr_6.Tpo" ".deps/fcr_6.Plo"; \ else rm -f ".deps/fcr_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_3.lo -MD -MP -MF .deps/fcr_3.Tpo -c fcr_3.c -o fcr_3.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_2.lo -MD -MP -MF .deps/fcr_2.Tpo -c fcr_2.c -o fcr_2.o echo timestamp > fcr_2.lo echo timestamp > fcr_3.lo echo timestamp > fhf_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_7.lo -MD -MP -MF ".deps/fcr_7.Tpo" \ -c -o fcr_7.lo `test -f 'fcr_7.c' || echo './'`fcr_7.c; \ then mv ".deps/fcr_7.Tpo" ".deps/fcr_7.Plo"; \ else rm -f ".deps/fcr_7.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_8.lo -MD -MP -MF ".deps/fcr_8.Tpo" \ -c -o fcr_8.lo `test -f 'fcr_8.c' || echo './'`fcr_8.c; \ then mv ".deps/fcr_8.Tpo" ".deps/fcr_8.Plo"; \ else rm -f ".deps/fcr_8.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_9.lo -MD -MP -MF ".deps/fcr_9.Tpo" \ -c -o fcr_9.lo `test -f 'fcr_9.c' || echo './'`fcr_9.c; \ then mv ".deps/fcr_9.Tpo" ".deps/fcr_9.Plo"; \ else rm -f ".deps/fcr_9.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_4.lo -MD -MP -MF .deps/fcr_4.Tpo -c fcr_4.c -o fcr_4.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_5.lo -MD -MP -MF .deps/fcr_5.Tpo -c fcr_5.c -o fcr_5.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_6.lo -MD -MP -MF .deps/fcr_6.Tpo -c fcr_6.c -o fcr_6.o echo timestamp > fcr_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_10.lo -MD -MP -MF ".deps/fcr_10.Tpo" \ -c -o fcr_10.lo `test -f 'fcr_10.c' || echo './'`fcr_10.c; \ then mv ".deps/fcr_10.Tpo" ".deps/fcr_10.Plo"; \ else rm -f ".deps/fcr_10.Tpo"; exit 1; \ fi echo timestamp > fcr_5.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_11.lo -MD -MP -MF ".deps/fcr_11.Tpo" \ -c -o fcr_11.lo `test -f 'fcr_11.c' || echo './'`fcr_11.c; \ then mv ".deps/fcr_11.Tpo" ".deps/fcr_11.Plo"; \ else rm -f ".deps/fcr_11.Tpo"; exit 1; \ fi echo timestamp > fcr_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_12.lo -MD -MP -MF ".deps/fcr_12.Tpo" \ -c -o fcr_12.lo `test -f 'fcr_12.c' || echo './'`fcr_12.c; \ then mv ".deps/fcr_12.Tpo" ".deps/fcr_12.Plo"; \ else rm -f ".deps/fcr_12.Tpo"; exit 1; \ fi echo timestamp > frc_128.lo gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_7.lo -MD -MP -MF .deps/fcr_7.Tpo -c fcr_7.c -o fcr_7.o if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_13.lo -MD -MP -MF ".deps/fcr_13.Tpo" \ -c -o fcr_13.lo `test -f 'fcr_13.c' || echo './'`fcr_13.c; \ then mv ".deps/fcr_13.Tpo" ".deps/fcr_13.Plo"; \ else rm -f ".deps/fcr_13.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_8.lo -MD -MP -MF .deps/fcr_8.Tpo -c fcr_8.c -o fcr_8.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_9.lo -MD -MP -MF .deps/fcr_9.Tpo -c fcr_9.c -o fcr_9.o echo timestamp > fcr_7.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_14.lo -MD -MP -MF ".deps/fcr_14.Tpo" \ -c -o fcr_14.lo `test -f 'fcr_14.c' || echo './'`fcr_14.c; \ then mv ".deps/fcr_14.Tpo" ".deps/fcr_14.Plo"; \ else rm -f ".deps/fcr_14.Tpo"; exit 1; \ fi echo timestamp > fcr_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_15.lo -MD -MP -MF ".deps/fcr_15.Tpo" \ -c -o fcr_15.lo `test -f 'fcr_15.c' || echo './'`fcr_15.c; \ then mv ".deps/fcr_15.Tpo" ".deps/fcr_15.Plo"; \ else rm -f ".deps/fcr_15.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_10.lo -MD -MP -MF .deps/fcr_10.Tpo -c fcr_10.c -o fcr_10.o echo timestamp > fcr_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_16.lo -MD -MP -MF ".deps/fcr_16.Tpo" \ -c -o fcr_16.lo `test -f 'fcr_16.c' || echo './'`fcr_16.c; \ then mv ".deps/fcr_16.Tpo" ".deps/fcr_16.Plo"; \ else rm -f ".deps/fcr_16.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_11.lo -MD -MP -MF .deps/fcr_11.Tpo -c fcr_11.c -o fcr_11.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_12.lo -MD -MP -MF .deps/fcr_12.Tpo -c fcr_12.c -o fcr_12.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_13.lo -MD -MP -MF .deps/fcr_13.Tpo -c fcr_13.c -o fcr_13.o echo timestamp > fcr_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_32.lo -MD -MP -MF ".deps/fcr_32.Tpo" \ -c -o fcr_32.lo `test -f 'fcr_32.c' || echo './'`fcr_32.c; \ then mv ".deps/fcr_32.Tpo" ".deps/fcr_32.Plo"; \ else rm -f ".deps/fcr_32.Tpo"; exit 1; \ fi echo timestamp > fcr_12.lo echo timestamp > fcr_11.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_64.lo -MD -MP -MF ".deps/fcr_64.Tpo" \ -c -o fcr_64.lo `test -f 'fcr_64.c' || echo './'`fcr_64.c; \ then mv ".deps/fcr_64.Tpo" ".deps/fcr_64.Plo"; \ else rm -f ".deps/fcr_64.Tpo"; exit 1; \ fi if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_128.lo -MD -MP -MF ".deps/fcr_128.Tpo" \ -c -o fcr_128.lo `test -f 'fcr_128.c' || echo './'`fcr_128.c; \ then mv ".deps/fcr_128.Tpo" ".deps/fcr_128.Plo"; \ else rm -f ".deps/fcr_128.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_14.lo -MD -MP -MF .deps/fcr_14.Tpo -c fcr_14.c -o fcr_14.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_15.lo -MD -MP -MF .deps/fcr_15.Tpo -c fcr_15.c -o fcr_15.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_16.lo -MD -MP -MF .deps/fcr_16.Tpo -c fcr_16.c -o fcr_16.o echo timestamp > fcr_13.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_2.lo -MD -MP -MF ".deps/fhb_2.Tpo" \ -c -o fhb_2.lo `test -f 'fhb_2.c' || echo './'`fhb_2.c; \ then mv ".deps/fhb_2.Tpo" ".deps/fhb_2.Plo"; \ else rm -f ".deps/fhb_2.Tpo"; exit 1; \ fi echo timestamp > fcr_14.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_3.lo -MD -MP -MF ".deps/fhb_3.Tpo" \ -c -o fhb_3.lo `test -f 'fhb_3.c' || echo './'`fhb_3.c; \ then mv ".deps/fhb_3.Tpo" ".deps/fhb_3.Plo"; \ else rm -f ".deps/fhb_3.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_32.lo -MD -MP -MF .deps/fcr_32.Tpo -c fcr_32.c -o fcr_32.o echo timestamp > fcr_15.lo gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_128.lo -MD -MP -MF .deps/fcr_128.Tpo -c fcr_128.c -o fcr_128.o if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_4.lo -MD -MP -MF ".deps/fhb_4.Tpo" \ -c -o fhb_4.lo `test -f 'fhb_4.c' || echo './'`fhb_4.c; \ then mv ".deps/fhb_4.Tpo" ".deps/fhb_4.Plo"; \ else rm -f ".deps/fhb_4.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_64.lo -MD -MP -MF .deps/fcr_64.Tpo -c fcr_64.c -o fcr_64.o echo timestamp > fcr_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_5.lo -MD -MP -MF ".deps/fhb_5.Tpo" \ -c -o fhb_5.lo `test -f 'fhb_5.c' || echo './'`fhb_5.c; \ then mv ".deps/fhb_5.Tpo" ".deps/fhb_5.Plo"; \ else rm -f ".deps/fhb_5.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_2.lo -MD -MP -MF .deps/fhb_2.Tpo -c fhb_2.c -o fhb_2.o echo timestamp > fhf_32.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_6.lo -MD -MP -MF ".deps/fhb_6.Tpo" \ -c -o fhb_6.lo `test -f 'fhb_6.c' || echo './'`fhb_6.c; \ then mv ".deps/fhb_6.Tpo" ".deps/fhb_6.Plo"; \ else rm -f ".deps/fhb_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_3.lo -MD -MP -MF .deps/fhb_3.Tpo -c fhb_3.c -o fhb_3.o echo timestamp > fhb_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_7.lo -MD -MP -MF ".deps/fhb_7.Tpo" \ -c -o fhb_7.lo `test -f 'fhb_7.c' || echo './'`fhb_7.c; \ then mv ".deps/fhb_7.Tpo" ".deps/fhb_7.Plo"; \ else rm -f ".deps/fhb_7.Tpo"; exit 1; \ fi echo timestamp > fcr_32.lo gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_4.lo -MD -MP -MF .deps/fhb_4.Tpo -c fhb_4.c -o fhb_4.o if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_8.lo -MD -MP -MF ".deps/fhb_8.Tpo" \ -c -o fhb_8.lo `test -f 'fhb_8.c' || echo './'`fhb_8.c; \ then mv ".deps/fhb_8.Tpo" ".deps/fhb_8.Plo"; \ else rm -f ".deps/fhb_8.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_5.lo -MD -MP -MF .deps/fhb_5.Tpo -c fhb_5.c -o fhb_5.o echo timestamp > fhb_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_9.lo -MD -MP -MF ".deps/fhb_9.Tpo" \ -c -o fhb_9.lo `test -f 'fhb_9.c' || echo './'`fhb_9.c; \ then mv ".deps/fhb_9.Tpo" ".deps/fhb_9.Plo"; \ else rm -f ".deps/fhb_9.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_6.lo -MD -MP -MF .deps/fhb_6.Tpo -c fhb_6.c -o fhb_6.o echo timestamp > fhb_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_10.lo -MD -MP -MF ".deps/fhb_10.Tpo" \ -c -o fhb_10.lo `test -f 'fhb_10.c' || echo './'`fhb_10.c; \ then mv ".deps/fhb_10.Tpo" ".deps/fhb_10.Plo"; \ else rm -f ".deps/fhb_10.Tpo"; exit 1; \ fi echo timestamp > fhb_5.lo gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_7.lo -MD -MP -MF .deps/fhb_7.Tpo -c fhb_7.c -o fhb_7.o if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_16.lo -MD -MP -MF ".deps/fhb_16.Tpo" \ -c -o fhb_16.lo `test -f 'fhb_16.c' || echo './'`fhb_16.c; \ then mv ".deps/fhb_16.Tpo" ".deps/fhb_16.Plo"; \ else rm -f ".deps/fhb_16.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_8.lo -MD -MP -MF .deps/fhb_8.Tpo -c fhb_8.c -o fhb_8.o echo timestamp > fcr_64.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_32.lo -MD -MP -MF ".deps/fhb_32.Tpo" \ -c -o fhb_32.lo `test -f 'fhb_32.c' || echo './'`fhb_32.c; \ then mv ".deps/fhb_32.Tpo" ".deps/fhb_32.Plo"; \ else rm -f ".deps/fhb_32.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_9.lo -MD -MP -MF .deps/fhb_9.Tpo -c fhb_9.c -o fhb_9.o echo timestamp > fhb_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rconfig.lo -MD -MP -MF ".deps/rconfig.Tpo" \ -c -o rconfig.lo `test -f 'rconfig.c' || echo './'`rconfig.c; \ then mv ".deps/rconfig.Tpo" ".deps/rconfig.Plo"; \ else rm -f ".deps/rconfig.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_10.lo -MD -MP -MF .deps/fhb_10.Tpo -c fhb_10.c -o fhb_10.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_16.lo -MD -MP -MF .deps/fhb_16.Tpo -c fhb_16.c -o fhb_16.o echo timestamp > fhb_7.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rplanner.lo -MD -MP -MF ".deps/rplanner.Tpo" \ -c -o rplanner.lo `test -f 'rplanner.c' || echo './'`rplanner.c; \ then mv ".deps/rplanner.Tpo" ".deps/rplanner.Plo"; \ else rm -f ".deps/rplanner.Tpo"; exit 1; \ fi echo timestamp > fhb_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rexec.lo -MD -MP -MF ".deps/rexec.Tpo" \ -c -o rexec.lo `test -f 'rexec.c' || echo './'`rexec.c; \ then mv ".deps/rexec.Tpo" ".deps/rexec.Plo"; \ else rm -f ".deps/rexec.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_32.lo -MD -MP -MF .deps/fhb_32.Tpo -c fhb_32.c -o fhb_32.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rconfig.lo -MD -MP -MF .deps/rconfig.Tpo -c rconfig.c -o rconfig.o echo timestamp > fhb_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rexec2.lo -MD -MP -MF ".deps/rexec2.Tpo" \ -c -o rexec2.lo `test -f 'rexec2.c' || echo './'`rexec2.c; \ then mv ".deps/rexec2.Tpo" ".deps/rexec2.Plo"; \ else rm -f ".deps/rexec2.Tpo"; exit 1; \ fi echo timestamp > rconfig.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rfftwnd.lo -MD -MP -MF ".deps/rfftwnd.Tpo" \ -c -o rfftwnd.lo `test -f 'rfftwnd.c' || echo './'`rfftwnd.c; \ then mv ".deps/rfftwnd.Tpo" ".deps/rfftwnd.Plo"; \ else rm -f ".deps/rfftwnd.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rplanner.lo -MD -MP -MF .deps/rplanner.Tpo -c rplanner.c -o rplanner.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rexec.lo -MD -MP -MF .deps/rexec.Tpo -c rexec.c -o rexec.o echo timestamp > fhb_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rgeneric.lo -MD -MP -MF ".deps/rgeneric.Tpo" \ -c -o rgeneric.lo `test -f 'rgeneric.c' || echo './'`rgeneric.c; \ then mv ".deps/rgeneric.Tpo" ".deps/rgeneric.Plo"; \ else rm -f ".deps/rgeneric.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rexec2.lo -MD -MP -MF .deps/rexec2.Tpo -c rexec2.c -o rexec2.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rfftwnd.lo -MD -MP -MF .deps/rfftwnd.Tpo -c rfftwnd.c -o rfftwnd.o gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rgeneric.lo -MD -MP -MF .deps/rgeneric.Tpo -c rgeneric.c -o rgeneric.o echo timestamp > fhb_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rfftwf77.lo -MD -MP -MF ".deps/rfftwf77.Tpo" \ -c -o rfftwf77.lo `test -f 'rfftwf77.c' || echo './'`rfftwf77.c; \ then mv ".deps/rfftwf77.Tpo" ".deps/rfftwf77.Plo"; \ else rm -f ".deps/rfftwf77.Tpo"; exit 1; \ fi echo timestamp > rexec.lo rm -f drfftw.h sed 's/\"fftw/\"dfftw/g;s/\"rfftw/\"drfftw/g' ./rfftw.h > drfftw.h echo timestamp > fcr_128.lo gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rfftwf77.lo -MD -MP -MF .deps/rfftwf77.Tpo -c rfftwf77.c -o rfftwf77.o echo timestamp > rexec2.lo echo timestamp > rgeneric.lo echo timestamp > rfftwf77.lo echo timestamp > rplanner.lo echo timestamp > rfftwnd.lo echo timestamp > fhb_32.lo /bin/sh ../libtool --mode=link gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -o libdrfftw.la -rpath /usr/local/apps/amber/11-1.5/amber11/lib64 -version-info 2:7:0 frc_1.lo frc_2.lo frc_3.lo frc_4.lo frc_5.lo frc_6.lo frc_7.lo frc_8.lo frc_9.lo frc_10.lo frc_11.lo frc_12.lo frc_13.lo frc_14.lo frc_15.lo frc_16.lo frc_32.lo frc_64.lo frc_128.lo fhf_2.lo fhf_3.lo fhf_4.lo fhf_5.lo fhf_6.lo fhf_7.lo fhf_8.lo fhf_9.lo fhf_10.lo fhf_16.lo fhf_32.lo fcr_1.lo fcr_2.lo fcr_3.lo fcr_4.lo fcr_5.lo fcr_6.lo fcr_7.lo fcr_8.lo fcr_9.lo fcr_10.lo fcr_11.lo fcr_12.lo fcr_13.lo fcr_14.lo fcr_15.lo fcr_16.lo fcr_32.lo fcr_64.lo fcr_128.lo fhb_2.lo fhb_3.lo fhb_4.lo fhb_5.lo fhb_6.lo fhb_7.lo fhb_8.lo fhb_9.lo fhb_10.lo fhb_16.lo fhb_32.lo rconfig.lo rplanner.lo rexec.lo rexec2.lo rfftwnd.lo rgeneric.lo rfftwf77.lo -lm mkdir .libs rm -fr .libs/libdrfftw.la .libs/libdrfftw.* .libs/libdrfftw.* ar cru .libs/libdrfftw.a frc_1.o frc_2.o frc_3.o frc_4.o frc_5.o frc_6.o frc_7.o frc_8.o frc_9.o frc_10.o frc_11.o frc_12.o frc_13.o frc_14.o frc_15.o frc_16.o frc_32.o frc_64.o frc_128.o fhf_2.o fhf_3.o fhf_4.o fhf_5.o fhf_6.o fhf_7.o fhf_8.o fhf_9.o fhf_10.o fhf_16.o fhf_32.o fcr_1.o fcr_2.o fcr_3.o fcr_4.o fcr_5.o fcr_6.o fcr_7.o fcr_8.o fcr_9.o fcr_10.o fcr_11.o fcr_12.o fcr_13.o fcr_14.o fcr_15.o fcr_16.o fcr_32.o fcr_64.o fcr_128.o fhb_2.o fhb_3.o fhb_4.o fhb_5.o fhb_6.o fhb_7.o fhb_8.o fhb_9.o fhb_10.o fhb_16.o fhb_32.o rconfig.o rplanner.o rexec.o rexec2.o rfftwnd.o rgeneric.o rfftwf77.o ranlib .libs/libdrfftw.a creating libdrfftw.la (cd .libs && rm -f libdrfftw.la && ln -s ../libdrfftw.la libdrfftw.la) make[4]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/rfftw' /bin/sh ../mkinstalldirs /usr/local/apps/amber/11-1.5/amber11/lib64 /bin/sh ../mkinstalldirs /usr/local/apps/amber/11-1.5/amber11/include /bin/sh ../libtool --mode=install /usr/bin/install -c libdrfftw.la /usr/local/apps/amber/11-1.5/amber11/lib64/libdrfftw.la /usr/bin/install -c -m 644 drfftw.h /usr/local/apps/amber/11-1.5/amber11/include/drfftw.h /usr/bin/install -c .libs/libdrfftw.lai /usr/local/apps/amber/11-1.5/amber11/lib64/libdrfftw.la /usr/bin/install -c .libs/libdrfftw.a /usr/local/apps/amber/11-1.5/amber11/lib64/libdrfftw.a ranlib /usr/local/apps/amber/11-1.5/amber11/lib64/libdrfftw.a chmod 644 /usr/local/apps/amber/11-1.5/amber11/lib64/libdrfftw.a PATH="$PATH:/sbin" ldconfig -n /usr/local/apps/amber/11-1.5/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /usr/local/apps/amber/11-1.5/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[4]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/rfftw' make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/rfftw' Making install in tests make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/tests' if gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I./../rfftw -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fftw_test.o -MD -MP -MF ".deps/fftw_test.Tpo" \ -c -o fftw_test.o `test -f 'fftw_test.c' || echo './'`fftw_test.c; \ then mv ".deps/fftw_test.Tpo" ".deps/fftw_test.Po"; \ else rm -f ".deps/fftw_test.Tpo"; exit 1; \ fi if gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I./../rfftw -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT test_main.o -MD -MP -MF ".deps/test_main.Tpo" \ -c -o test_main.o `test -f 'test_main.c' || echo './'`test_main.c; \ then mv ".deps/test_main.Tpo" ".deps/test_main.Po"; \ else rm -f ".deps/test_main.Tpo"; exit 1; \ fi if gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I./../rfftw -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rfftw_test.o -MD -MP -MF ".deps/rfftw_test.Tpo" \ -c -o rfftw_test.o `test -f 'rfftw_test.c' || echo './'`rfftw_test.c; \ then mv ".deps/rfftw_test.Tpo" ".deps/rfftw_test.Po"; \ else rm -f ".deps/rfftw_test.Tpo"; exit 1; \ fi /bin/sh ../libtool --mode=link gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -o fftw_test fftw_test.o test_main.o ../fftw/libdfftw.la -lm mkdir .libs gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -o fftw_test fftw_test.o test_main.o ../fftw/.libs/libdfftw.a -lm /bin/sh ../libtool --mode=link gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -o rfftw_test rfftw_test.o test_main.o ../rfftw/libdrfftw.la ../fftw/libdfftw.la -lm gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -o rfftw_test rfftw_test.o test_main.o ../rfftw/.libs/libdrfftw.a ../fftw/.libs/libdfftw.a -lm make[4]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/tests' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/tests' make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/tests' Making install in doc make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/doc' make[4]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/doc' make[4]: Nothing to be done for `install-exec-am'. /bin/sh ../mkinstalldirs /usr/local/apps/amber/11-1.5/amber11/info /usr/bin/install -c -m 644 ./fftw.info /usr/local/apps/amber/11-1.5/amber11/info/fftw.info /usr/bin/install -c -m 644 ./fftw.info-1 /usr/local/apps/amber/11-1.5/amber11/info/fftw.info-1 /usr/bin/install -c -m 644 ./fftw.info-2 /usr/local/apps/amber/11-1.5/amber11/info/fftw.info-2 /usr/bin/install -c -m 644 ./fftw.info-3 /usr/local/apps/amber/11-1.5/amber11/info/fftw.info-3 /usr/bin/install -c -m 644 ./fftw.info-4 /usr/local/apps/amber/11-1.5/amber11/info/fftw.info-4 /usr/bin/install -c -m 644 ./fftw.info-5 /usr/local/apps/amber/11-1.5/amber11/info/fftw.info-5 install-info --info-dir=/usr/local/apps/amber/11-1.5/amber11/info /usr/local/apps/amber/11-1.5/amber11/info/fftw.info install-info: warning: no info dir entry in `/usr/local/apps/amber/11-1.5/amber11/info/fftw.info' make[4]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/doc' make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/doc' Making install in threads make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/threads' make[4]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/threads' /bin/sh ../mkinstalldirs /usr/local/apps/amber/11-1.5/amber11/lib64 /bin/sh ../mkinstalldirs /usr/local/apps/amber/11-1.5/amber11/include make[4]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/threads' make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/threads' Making install in mpi make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/mpi' make[4]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/mpi' /bin/sh ../mkinstalldirs /usr/local/apps/amber/11-1.5/amber11/lib64 /bin/sh ../mkinstalldirs /usr/local/apps/amber/11-1.5/amber11/include make[4]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/mpi' make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5/mpi' make[3]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5' make[4]: Entering directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5' make[3]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5' make[2]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/fftw-2.1.5' make[1]: Leaving directory `/usr/local/apps/amber/11-1.5/amber11/AmberTools/src/rism' make: *** [serial] Error 2