simulated annealing protocol, 22 ps # &cntrl nstlim=22000, pencut=-0.001, nmropt=1, ntpr=200, ntt=1, ntwx=200, cut=15.0, ntb=0, vlimit=10, rgbmax=15.0, ntb=0, ntc=2, ntf=2, igb=1, saltcon=0.2, offset=0.13, / &ewald eedmeth=5, / # # simulated annealing algorithm: # H bonds held w/ SHAKE # generalized born solvent model # #from steps 0 to 5000: heat the system to 600K #from steps 5001-18000: re-cool to low temperatures with long tautp #from steps 18001-20000: final cooling with short tautp # &wt type='TEMP0', istep1=0,istep2=5000,value1=600., value2=600., / &wt type='TEMP0', istep1=5001, istep2=18000, value1=600.0, value2=100.0, / &wt type='TEMP0', istep1=18001, istep2=20000, value1=0.0, value2=0.0, / # &wt type='TAUTP', istep1=0,istep2=5000,value1=0.4, value2=0.4, / &wt type='TAUTP', istep1=5001,istep2=18000,value1=4.0, value2=4.0, / &wt type='TAUTP', istep1=18001,istep2=19000,value1=1.0, value2=1.0, / &wt type='TAUTP', istep1=19001,istep2=20000,value1=0.1, value2=0.05, / # &wt type='REST', istep1=0,istep2=3000,value1=0.1, value2=1.0, / &wt type='REST', istep1=3001,istep2=20000,value1=1.0, value2=1.0, / &wt type='END' / LISTOUT=POUT DISANG=RST