Dear users,
I am using ptraj (Amber 9) for analyzing the trajectory obtained after
simulation of 1ns of an RNA pseudoknot. Can you please tell me the
difference in the functionalities of rms and atomicfluct command. What
reference does atomicfluct uses for calculating positional fluctuations? Is
it some structure or is it calculated over time.
Thanks,
Asmita
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Received on Tue Nov 29 2011 - 05:00:04 PST
