On Thu, Nov 24, 2011 at 5:08 PM, Caglar Bayar <caglarbayar.gmail.com> wrote:
>
> My other question is about LJ parameters. There are two columns regarding
> to LJ parameters in the attached GAFF file. Could you also inform me about
> what they represent and what their units are. Below is an example of LJ
> parameters of carbon atom:
>
> c 1.9080 0.0860
>
See
http://ambermd.org/Questions/vdwequation.pdf for information about how
VDW parameters are implemented in Amber.
HTH,
Jason
>
> Thank you.
>
> Caglar Bayar.
>
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>
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Thu Nov 24 2011 - 20:30:03 PST
