Re: [AMBER] alpha helix structure consist of Alanine

From: Bill Ross <ross.cgl.ucsf.EDU>
Date: Wed, 23 Nov 2011 11:11:00 -0800

> I want to find some alpha-helix structure which consists of several
> Alanine residues (ie. Ala21), but I can't find it in the protein data
> bank, can anyone gives me some idea?

You could build your own classical alpha helix by e.g.

> x = sequence { ALA ALA ALA ... }

followed by an 'impose' cmd to set the torsions. There is an
example in the leap docs I believe.

Bill

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Received on Wed Nov 23 2011 - 11:30:03 PST
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