Re: [AMBER] mpirun

From: Jason Swails <jason.swails.gmail.com>
Date: Tue, 22 Nov 2011 07:13:50 -0500

On Nov 22, 2011, at 4:31 AM, leila karami <karami.leila1.gmail.com> wrote:

>
> It seems that there is no lamd running on the host localhost.localdomain.
>
> This indicates that the LAM/MPI runtime environment is not operating.
> The LAM/MPI runtime environment is necessary for MPI programs to run
> (the MPI program tired to invoke the "MPI_Init" function).
>
> Please run the "lamboot" command the start the LAM/MPI runtime
> environment. See the LAM/MPI documentation for how to invoke
> "lamboot" across multiple machines.

I believe this was answered the last time it was posted to the list, but I'm not in a position to easily check the archives. This error message is pretty self-explanatory as far as error messages go. Your MPI implementation requires a daemon running in the background In order to function properly. You can launch this daemon via the command

lamboot

Note if lamboot is not in your path you will have to specify the path to that binary or add the folder it is in to your path.

This is not really an Amber issue, but rather an MPI issue. If the above advice is not helpful, you will likely have more luck with your Google or local system administrator or Linux guru than you will on this list.

HTH,
Jason

--
Jason Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Tue Nov 22 2011 - 04:30:03 PST
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