something like that so I keep pn getting errors on this issue
port -d selfupdate
---> Updating MacPorts base sources using rsync
receiving file list ... done
rsync: mkstemp "/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/.base.tar.RiFm5C"
failed: Permission denied (13)
sent 10864 bytes received 111 bytes 3135.71 bytes/sec
total size is 3226624 speedup is 294.00
rsync error: some files could not be transferred (code 23) at
/SourceCache/rsync/rsync-42/rsync/main.c(1400) [generator=2.6.9]
shell command "/usr/bin/rsync -rtzv --delete-after
rsync://rsync.macports.org/release/tarballs/base.tar
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs"
returned error 23
DEBUG: Error synchronizing MacPorts sources: shell command failed (see
log for details)
while executing
"macports::selfupdate [array get global_options] base_updated"
Error: /opt/local/bin/port: port selfupdate failed: Error
synchronizing MacPorts sources: shell command failed (see log for
details)
On Mon, Nov 21, 2011 at 9:21 PM, Jason Swails <jason.swails.gmail.com> wrote:
> On Mon, Nov 21, 2011 at 3:01 PM, Jorgen Simonsen <jorgen589.gmail.com>wrote:
>
>> ok so I changed the gcc
>>
>> sudo port select gcc mp-gcc44
>>
>> but now the libraries are not linked correctly
>>
>> gcc -v
>>
>> gcc-mp-4.4: error trying to exec
>> '/opt/local/bin/i686-apple-darwin11-llvm-gcc-4.2': execvp: No such
>> file or directory
>>
>
> Let me guess. You just upgraded from Mac OS X 10.6 Snow Leopard to Mac OS
> X 10.7 Lion from the App store, right? If so, your MacPorts is completely
> busted. All of the binaries were compiled for the Darwin 10 kernel
> (they're now on Darwin 11). You'll have to re-install all of your ports.
> On the MacPorts website itself they suggest just blowing away the whole
> /opt/local directory and starting over (you can get a list of installed
> ports via "port installed").
>
> If you run "port outdated", it should show you a complete list of all ports
> that you have installed with a little note about the change in Darwin
> versions. (I just bit the bullet and upgraded a week or 2 ago so I could
> see what issues people would be running into).
>
> Your other option is to run "sudo port upgrade outdated" and watch MacPorts
> try to rebuild every binary it has installed. It will take awhile, and
> you'll likely run into occasional errors (that was the route I chose). I
> have everything up and working now after that, though.
>
> HTH,
> Jason
>
>
>>
>>
>> On Mon, Nov 21, 2011 at 8:40 PM, Jason Swails <jason.swails.gmail.com>
>> wrote:
>> > On Mon, Nov 21, 2011 at 2:32 PM, Jorgen Simonsen <jorgen589.gmail.com
>> >wrote:
>> >
>> >> my gcc -v is
>> >>
>> >> Using built-in specs.
>> >> Target: i686-apple-darwin11
>> >> Configured with:
>> >> /private/var/tmp/llvmgcc42/llvmgcc42-2335.15~25/src/configure
>> >> --disable-checking --enable-werror
>> >> --prefix=/Developer/usr/llvm-gcc-4.2 --mandir=/share/man
>> >> --enable-languages=c,objc,c++,obj-c++ --program-prefix=llvm-
>> >> --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/
>> >> --with-slibdir=/usr/lib --build=i686-apple-darwin11
>> >>
>> >>
>> --enable-llvm=/private/var/tmp/llvmgcc42/llvmgcc42-2335.15~25/dst-llvmCore/Developer/usr/local
>> >> --program-prefix=i686-apple-darwin11- --host=x86_64-apple-darwin11
>> >> --target=i686-apple-darwin11
>> >> --with-gxx-include-dir=/usr/include/c++/4.2.1
>> >> Thread model: posix
>> >> gcc version 4.2.1 (Based on Apple Inc. build 5658) (LLVM build
>> 2335.15.00)
>> >>
>> >
>> > This is a problem. Your GCC is the 4.2.1 version that comes prebuilt
>> with
>> > XCode. You need to use the same gcc version as your gfortran version
>> > (4.4.6), most likely from MacPorts.
>> >
>> > HTH,
>> > Jason
>> >
>> > --
>> > Jason M. Swails
>> > Quantum Theory Project,
>> > University of Florida
>> > Ph.D. Candidate
>> > 352-392-4032
>> > _______________________________________________
>> > AMBER mailing list
>> > AMBER.ambermd.org
>> > http://lists.ambermd.org/mailman/listinfo/amber
>> >
>>
>> _______________________________________________
>> AMBER mailing list
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>>
>
>
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Candidate
> 352-392-4032
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Mon Nov 21 2011 - 13:00:03 PST
