Re: [AMBER] large.bcl bug in MCPB

From: Ben Roberts <ben.roberts.geek.nz>
Date: Thu, 17 Nov 2011 18:19:48 -0500

Hi Ji-Yuan,

On 17/11/2011, at 3:01 a.m., Áõ¼ªÔª wrote:

> The caps ACE and NME can not locate their accurate coordinate

I suspect the coordinates of ACE and NME are absolutely fine. When you added residues, you did so specifying "not bb". This is appropriate for the sidechain.bcl, but not for the large.bcl. I encourage you to reacquaint yourself with the example BCL scripts.

> and the residues which coordinated zn2+ were away from caps.

See my response above.

Hope that helps,

Ben


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Received on Thu Nov 17 2011 - 15:30:03 PST
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