[AMBER] Spherical Coordinates & Pulling Ligand

From: Sai Kumar Ramadugu <sramadugu.gmail.com>
Date: Thu, 17 Nov 2011 11:09:25 -0600

Hi Amber Users,
If I want to use the spherical coordinates for pulling the ligand along a
given r or given theta or given phi, can I do it?
I could not find how to use this in amber 11 manual.
My system consists of a protein bound to ligand. I want to pull the ligand
in different directions so that all the necessary amino acid interactions
can be observed.


Any suggestions will be greatly helpful.

Thanks
Sai
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Received on Thu Nov 17 2011 - 09:30:02 PST
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