On Wed, Nov 16, 2011, Jose Borreguero wrote:
>
> I tried to compile (using gcc 4.6.1 and gfortran 4.6.1) amberTools-1.2 for
> amber10 support after applying the bugfixes patch file, and obtained:
> *ERROR: na_anal.c:2417:16: error: expected ‘)’ before ‘is’*
>
> Inspection of line 2417 of file ./nab/na_anal.c shows:
> *printf( "\"%s" is not a valid answer.\n", ParallelAnswer );*
Please see
http://archive.ambermd.org/201007/0361.html. Note that (if you try
this route) you need to modify na_anal.nab, not na_anal.c.
But there is probably some other error preventing nab in AmberTools 1.2
from compiling with gcc4.6. I now have a virtual machine with Ubuntu 11.10,
so I try to spring some time free to try this. It's a very odd problem that
seems to have "gone away" in the conversion to later versions of AmberTools,
but I don't think(?) anyone knows why.
>
> I tried commenting the line *(cd
> nab && make install ) *in the Makefile_at because I don't use nab, but
> then I end up with another build error:
> */usr/local/amber/amber10/bin/nab -c symop.nab*
> *make[1]: /usr/local/amber/amber10/bin/nab: Command not found*
Good start; also comment out the line "(cd nss && make install)"
....dac
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Received on Wed Nov 16 2011 - 07:00:05 PST
