Re: [AMBER] Building non standard DNA residue

From: FyD <fyd.q4md-forcefieldtools.org>
Date: Tue, 15 Nov 2011 13:06:17 +0100

Dear Maiti,

> I am trying to build non-standard DNA residue using Antechamber.
> Could you please me reply some suggestion about making mainchain.dna
> file basically how do I define PRE_HEAD_TYPE & POST_TAIL_TYPE, it
> will be great help for me.

You might look at R.E.D. Server . http://q4md-forcefieldtools.org
See http://q4md-forcefieldtools.org/Tutorial/Tutorial-3.php
     http://q4md-forcefieldtools.org/Tutorial/Tutorial-3.php#26
     http://q4md-forcefieldtools.org/Tutorial/Tutorial-3.php#27

regards, Francois



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Received on Tue Nov 15 2011 - 04:30:03 PST