Dear Leila,
Please try these steps:
$ which mpd
//If it shows the above then its fine else one should give the full path while
using the mpd's//
$ mpdallexit
//That will kill all the mpds running at present//
Now type the below commands to set the mpd
$ mpd --daemon
$ mpdtrace -l
(it will give a pid number say 32858.. note that number)
Now log into the nodes which all u need to use and then type the command:
mpd -h <hostname> -p 32858 -n -d
earlier it was
mpd --host <hostname> --port 32858 --noconsole --daemon
Suppose you have done in all the nodes then when u r back in the master and
type the command mpdtrace -l it gives the below (numbers are arbitary)
$ mpdtrace -l
node1_33211
node2_33483
node3_33494
node4_33492
node5_37314
$ mpdtrace
node1
node2
node3
node4
node5
$ which mpirun
probable path can be
// /opt/openmpi-intel/bin/mpirun //
If no path then locate for mpirun
$ locate mpirun
//From the output, export the path into the bash shell//
$ vi ~/.bashrc or vi /etc/bashrc
~ export PATH=$PATH:/opt/openmpi-intel/bin/mpirun <or your given path>
save the .bashrc file.
$ source ~/.bashrc
$ which mpirun
Thanks & Best Regards,
Sudeep Narayan Banerjee
---------- Original Message -----------
From: leila karami <karami.leila1.gmail.com>
To: amber <amber.ambermd.org>
Sent: Sat, 12 Nov 2011 18:31:35 +0330
Subject: [AMBER] mpirun
> when I use lamboot or lamnodes command,
>
> -bash: lamboot: command not found.
>
> but in exe and bin directory, there are lamboot, lamnodes, lamd and mpirun.
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
------- End of Original Message -------
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Received on Mon Nov 14 2011 - 22:30:02 PST
