Huhu,
in the PDF manual about MMPBSA Python version, it is said:
> You can install MMPBSA.py using the command
>
> cd $AMBERHOME/src/mmpbsa_py
> make install
>
> or MMPBSA.py.MPI using the command
>
> cd $AMBERHOME/src/mmpbsa_py
> make parallel
This should be updated to
$ cd $AMBERHOME/AmberTools/mmpbsa_py
Also, this "error message" really was not expressive to me:
$ cd $AMBERHOME/src/mmpbsa_py
$ make parallel
MMPBSA.py has been moved to
/home/bioinfp/jang/sumpf/Amber11/test/amber11/AmberTools/src
Although I now know it was stupid my first impression was: hmmm.. very
fast build process, only one file moved.
A cleaner solution would be:
1) removing the makefile and only keeping the README or
2) echoing something like "ERROR: Go to
$AMBERHOME/AmberTools/src/mmpbs_py and invoke `make parallel` there"
Thanks,
Jan-Philip
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Received on Fri Nov 04 2011 - 08:00:04 PDT
