Re: [AMBER] 1JFF Antechamber, LEaP problems

From: case <case.biomaps.rutgers.edu>
Date: Wed, 2 Nov 2011 21:59:07 -0400

On Wed, Nov 02, 2011, Matthew D Antalek wrote:
>
> Now I realized that I needed to set the parameters. I was initally trying
> to use this tutorial:
> http://ambermd.org/tutorials/advanced/tutorial1/section1.htm,

What you want for taxol is tutorial B4.

> but I also found this tutorial:
> http://www.rosswalker.co.uk/tutorials/amber_workshop/Tutorial_five/create_prmtop.htm.

This is a old amber8 (2006) tutorial. Sishi Tang brought it up to date and
considerably extended it to make the current B4 tutorial.

....dac


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Received on Wed Nov 02 2011 - 19:00:05 PDT