Amber Archive Nov 2011 by thread
- [AMBER] cutoff in amber cuda Neha Gandhi (Mon Oct 31 2011 - 19:23:34 PDT)
- Re: [AMBER] Problems with AmberTools compilation under Debian James Starlight (Tue Nov 01 2011 - 00:05:18 PDT)
- Re: [AMBER] iron sulphur cluster parametrization FyD (Tue Nov 01 2011 - 01:10:26 PDT)
- Re: [AMBER] parameters for anchor-modified glycopeptides Urszula Uciechowska (Tue Nov 01 2011 - 01:49:48 PDT)
- [AMBER] Measurement of distance between residues forming Hydrogen bond Aditya Padhi (Tue Nov 01 2011 - 01:56:05 PDT)
- Re: [AMBER] distribution of selected water Bruno Rodrigues (Tue Nov 01 2011 - 03:26:42 PDT)
- [AMBER] Problems with XLEAP James Starlight (Tue Nov 01 2011 - 03:44:07 PDT)
- Re: [AMBER] molecule out box and correct hbond analysis Bruno Rodrigues (Tue Nov 01 2011 - 04:56:00 PDT)
- Re: [AMBER] how to load atom type for divalent ions in leaprc.ff10? David A Case (Tue Nov 01 2011 - 05:14:08 PDT)
- Re: [AMBER] Issue with running sander with SHAKE David A Case (Tue Nov 01 2011 - 05:22:13 PDT)
- [AMBER] RMSD of one atom Esam Tolba (Tue Nov 01 2011 - 10:31:41 PDT)
- [AMBER] PB Bomb in pb_atmlist(): maxnba too short manikanthan bhavaraju (Tue Nov 01 2011 - 11:47:30 PDT)
- [AMBER] AmberTools 1.5 build fails due to undefined symbols in libnetcdf.a Jan-Philip Gehrcke (Tue Nov 01 2011 - 13:45:51 PDT)
- [AMBER] Minimization in sander Anglea A. (Wed Nov 02 2011 - 01:49:13 PDT)
- Re: [AMBER] please help me pancham lal gupta (Wed Nov 02 2011 - 03:21:42 PDT)
- [AMBER] Softcore TI. Peter Winn (Wed Nov 02 2011 - 05:36:16 PDT)
- [AMBER] test_amber_cuda.sh requires small fix Jan-Philip Gehrcke (Wed Nov 02 2011 - 08:13:39 PDT)
- [AMBER] sander simulated annealing Charles Johnson (Wed Nov 02 2011 - 08:53:50 PDT)
- [AMBER] post MD energy calculations peker milas (Wed Nov 02 2011 - 09:39:19 PDT)
- [AMBER] Creating i-motif (cruciform DNA) using NAB?? raghav singh (Wed Nov 02 2011 - 11:17:46 PDT)
- Re: [AMBER] 1JFF Antechamber, LEaP problems Matthew D Antalek (Wed Nov 02 2011 - 14:23:38 PDT)
- [AMBER] using AmberTools on Desmond trajectories Ozen, Aysegul (Wed Nov 02 2011 - 15:48:52 PDT)
- [AMBER] Some questions in cluster output qiao xue (Wed Nov 02 2011 - 19:52:31 PDT)
- Re: [AMBER] safemem.o error while compiling Ambertools 1.5 Andrew Voronkov (Thu Nov 03 2011 - 02:53:42 PDT)
- [AMBER] problems in reading molecule in tleap/xleap Urszula Uciechowska (Thu Nov 03 2011 - 05:28:20 PDT)
- [AMBER] sander error Charles Johnson (Thu Nov 03 2011 - 07:24:08 PDT)
- [AMBER] Minimization problems. same box different water model Brian Radak (Thu Nov 03 2011 - 08:52:19 PDT)
- [AMBER] Two LMOD questions Sarah Edwards (Thu Nov 03 2011 - 12:11:23 PDT)
- [AMBER] bashrc problems Andrew Voronkov (Fri Nov 04 2011 - 04:08:29 PDT)
- [AMBER] Installation of MMPBSA.MPI should be clarified Jan-Philip Gehrcke (Fri Nov 04 2011 - 07:37:29 PDT)
- [AMBER] directional pressure variation Giovanni Pavan (Fri Nov 04 2011 - 08:08:05 PDT)
- [AMBER] MMPBSA.py: DELTA section missing in FINAL_DECOMP_MMPBSA.dat for dec_verbose=3 Jan-Philip Gehrcke (Fri Nov 04 2011 - 09:47:32 PDT)
- [AMBER] Segmentation fault in ptraj clustering Seungyeul Yoo (Fri Nov 04 2011 - 12:17:56 PDT)
- [AMBER] crashed run and time estimate Yao Yao (Fri Nov 04 2011 - 17:52:52 PDT)
- [AMBER] Visualization of Cluster analysis results wrong string (Fri Nov 04 2011 - 22:42:47 PDT)
- [AMBER] About RESP fitting gunajyoti das (Sat Nov 05 2011 - 05:36:52 PDT)
- [AMBER] Some questions of cluster analysis qiao xue (Sat Nov 05 2011 - 08:31:50 PDT)
- [AMBER] mm_pbsa error Esam Tolba (Sat Nov 05 2011 - 09:27:28 PDT)
- [AMBER] anisotropic NPT simulation Giovanni Pavan (Sat Nov 05 2011 - 11:16:30 PDT)
- [AMBER] 256 CPUs restriction in AmberMD? Garo Garabedyan (Sun Nov 06 2011 - 13:06:57 PST)
- [AMBER] How to keep Graphene sheet fixed during MD simulation. hai wei (Sun Nov 06 2011 - 15:51:06 PST)
- [AMBER] About Mn2+ parameters in amber 刘吉元 (Sun Nov 06 2011 - 20:14:48 PST)
- [AMBER] Installation of amber11 on the latest Ubuntu 64bit Qinghua Liao (Sun Nov 06 2011 - 23:43:00 PST)
- [AMBER] problem of installation of amber 11 on ubuntu Qinghua Liao (Mon Nov 07 2011 - 00:10:28 PST)
- [AMBER] Protein structure heating into a mess Xiaozhou Li (Mon Nov 07 2011 - 09:18:13 PST)
- [AMBER] addles "old coordinate file not specified" Jennifer Brookes (Mon Nov 07 2011 - 09:25:50 PST)
- [AMBER] About defining of a modified cytosine which is covalently bonded to the sulfer of cysteine Jin Yang (Mon Nov 07 2011 - 11:16:50 PST)
- [AMBER] separate build and install dirs? Michael Sternberg (Mon Nov 07 2011 - 15:01:19 PST)
- [AMBER] AMBER Survey C2075 Winners Ross Walker (Mon Nov 07 2011 - 16:36:28 PST)
- [AMBER] AMBER9 in GPU Vijay Manickam Achari (Mon Nov 07 2011 - 20:01:29 PST)
- [AMBER] entropy calculation Sangita Kachhap (Mon Nov 07 2011 - 22:27:38 PST)
- [AMBER] Recent mails Marc Baaden (Mon Nov 07 2011 - 23:48:20 PST)
- [AMBER] apologies for an error Marc Baaden (Mon Nov 07 2011 - 23:58:17 PST)
- [AMBER] MN2+ ion protein can't be dealed with MCPB 刘吉元 (Tue Nov 08 2011 - 06:19:33 PST)
- [AMBER] Membrane building madhumita das (Tue Nov 08 2011 - 09:05:32 PST)
- [AMBER] problem in solvation Senthil Natesan (Tue Nov 08 2011 - 09:24:50 PST)
- [AMBER] AmberTools1.5 install problems on Mac OS X 10.7.2 Frank Barry (Tue Nov 08 2011 - 12:30:58 PST)
- [AMBER] Questions about LEaP: atom connect and delete hydrogen Tales Yuan (Tue Nov 08 2011 - 19:06:03 PST)
- [AMBER] calculate residue wise SASA Xiao Chen (Tue Nov 08 2011 - 21:08:13 PST)
- [AMBER] problem with pmemd.cuda Giovanni Pavan (Wed Nov 09 2011 - 01:07:57 PST)
- [AMBER] AMBER Shesh Nath (Wed Nov 09 2011 - 02:20:28 PST)
- [AMBER] Different print behavior for mdcrd and ncsu modules Brian Radak (Wed Nov 09 2011 - 06:56:43 PST)
- [AMBER] PLUMED release 1.3 available Massimiliano Bonomi (Wed Nov 09 2011 - 07:11:50 PST)
- [AMBER] help with antechamber jun kit (Wed Nov 09 2011 - 10:45:01 PST)
- Re: [AMBER] Nudged Elastic Band (NEB) with torque PBS system c00jsw00.nchc.narl.org.tw (Wed Nov 09 2011 - 22:44:53 PST)
- Re: [AMBER] nmropt modes for GPU accelerated pmemd 11 Andre Serobian (Thu Nov 10 2011 - 01:58:37 PST)
- [AMBER] problem of generating prmtop and inpcrd files of a small molecule attached with several amino acids Qinghua Liao (Thu Nov 10 2011 - 05:20:43 PST)
- Re: [AMBER] problems in reading linrary/tleap case (Thu Nov 10 2011 - 06:21:13 PST)
- [AMBER] Xleap pdb editing James Starlight (Thu Nov 10 2011 - 07:47:15 PST)
- [AMBER] any fix so that I can compile AmberTools with gfortran 4.6.1? Jose Borreguero (Thu Nov 10 2011 - 08:30:06 PST)
- [AMBER] leap cannot read MOL2 file that it has written before: small fix suggested Jan-Philip Gehrcke (Thu Nov 10 2011 - 11:26:20 PST)
- [AMBER] ZAFF parametrization problem , parameters not saved, could not find bond parameters Andrew Voronkov (Thu Nov 10 2011 - 13:21:21 PST)
- [AMBER] AMBER 11 (Problem with the input format) Fernando Blanco (Fri Nov 11 2011 - 04:40:30 PST)
- [AMBER] MKL: lib dir name changed for 64bit version Michael Sternberg (Fri Nov 11 2011 - 07:50:23 PST)
- [AMBER] Phi/psi to free energies Lekpa Duukori (Fri Nov 11 2011 - 08:23:36 PST)
- [AMBER] bad atom type: Br Hector A. Baldoni (Fri Nov 11 2011 - 13:17:17 PST)
- [AMBER] Problems of generating prmtop and inpcrd files for ligand-receptor with two Mg2+ ions --please help Crystal.CHIA-YU Ku (Fri Nov 11 2011 - 13:48:18 PST)
- [AMBER] comparison failures in the Amber11 and AT15 test bin wang (Fri Nov 11 2011 - 15:20:25 PST)
- [AMBER] question about MMPBSA.py Sidney Elmer (Fri Nov 11 2011 - 15:42:18 PST)
- [AMBER] msd subrata paul (Fri Nov 11 2011 - 22:34:06 PST)
- [AMBER] mpirun leila karami (Sat Nov 12 2011 - 06:22:42 PST)
- [AMBER] mpirun leila karami (Sat Nov 12 2011 - 07:01:35 PST)
- [AMBER] Discrepancy of GBSA results Anglea A. (Sat Nov 12 2011 - 07:20:23 PST)
- [AMBER] building a polymer and running antechamber on it Changwoo Do (Sat Nov 12 2011 - 10:14:13 PST)
- [AMBER] Calculate charges using better method/basis set? Ismail, Mohd F. (Sat Nov 12 2011 - 10:22:20 PST)
- [AMBER] MMPBSA - running dynamics Fernando Blanco (Sat Nov 12 2011 - 11:16:06 PST)
- [AMBER] MN2+ ion protein can't be dealed with MCPB 刘吉元 (Sun Nov 13 2011 - 01:33:41 PST)
- [AMBER] how to use ptraj to convert trajectory files? Yun Shi (Sun Nov 13 2011 - 11:06:14 PST)
- [AMBER] Ca(2+) LJ parameters Dr. Vitaly V. Chaban (Sun Nov 13 2011 - 12:40:53 PST)
- [AMBER] 16 microsecond MD run David Condon (Sun Nov 13 2011 - 15:30:45 PST)
- [AMBER] MCPB settings file 刘吉元 (Sun Nov 13 2011 - 21:47:57 PST)
- [AMBER] Compiling trouble of AmberTools with intel compiler v12.1.0. K. Uebayashi (Sun Nov 13 2011 - 22:51:29 PST)
- [AMBER] Pre-equilibrium of REMD simulations ÏéÇ« ¿× (Mon Nov 14 2011 - 06:15:57 PST)
- [AMBER] "force field" vs. "potential" Jan-Philip Gehrcke (Mon Nov 14 2011 - 11:15:47 PST)
- [AMBER] problems of MMPBSA.py.MPI Qinghua Liao (Mon Nov 14 2011 - 12:54:03 PST)
- [AMBER] QMMM SCC-DFTB: ERROR ON EWEVGE (Eigenvalue solver) Emmanuel Baribefe Naziga (Mon Nov 14 2011 - 15:39:13 PST)
- [AMBER] How MCPB add ligand with a small molecule in *_siderchain.bcl 刘吉元 (Mon Nov 14 2011 - 19:15:37 PST)
- [AMBER] Building non standard DNA residue Buddhadev Maiti (Mon Nov 14 2011 - 20:36:14 PST)
- [AMBER] Installing AMBER9 in SGI_ALTIX-XE1300 - need some help Vijay Manickam Achari (Tue Nov 15 2011 - 00:55:58 PST)
- [AMBER] dummny atoms in .prep file Andrew Voronkov (Tue Nov 15 2011 - 01:57:55 PST)
- [AMBER] ambertools 1.5 compiling ERROR: Return type mismatch of function 'cgalf' at (1) (REAL(8)/REAL(4)) Jose Borreguero (Tue Nov 15 2011 - 05:44:22 PST)
- [AMBER] Minimization of only certain atoms David Condon (Tue Nov 15 2011 - 06:51:51 PST)
- [AMBER] Charge method Changwoo Do (Tue Nov 15 2011 - 12:27:04 PST)
- [AMBER] problem in leap Qinghua Liao (Wed Nov 16 2011 - 01:16:29 PST)
- [AMBER] MMPBSA - ptraj for RMSD Fernando Blanco (Wed Nov 16 2011 - 03:05:27 PST)
- [AMBER] mpirun leila karami (Wed Nov 16 2011 - 03:12:39 PST)
- [AMBER] compilation openmpi FAIL for AMBER9 Vijay Manickam Achari (Wed Nov 16 2011 - 03:36:40 PST)
- [AMBER] Compilation fail of amberTools 1.2 for amber10 support Jose Borreguero (Wed Nov 16 2011 - 06:15:34 PST)
- [AMBER] H-Bond problem najmul arfin (Wed Nov 16 2011 - 08:24:50 PST)
- [AMBER] pulling the ligand in different directions Sai Kumar Ramadugu (Wed Nov 16 2011 - 10:09:34 PST)
- [AMBER] Parameters for Ionic liquids in AMBER Ganesh Kamath (Wed Nov 16 2011 - 12:48:47 PST)
- [AMBER] ncsu_pmd and ncsu_smd Sai Kumar Ramadugu (Wed Nov 16 2011 - 17:26:25 PST)
- [AMBER] how to calculate interaction surface in time Tomáš Kučera (Thu Nov 17 2011 - 03:03:08 PST)
- [AMBER] question to R.E.D server Urszula Uciechowska (Thu Nov 17 2011 - 05:20:26 PST)
- [AMBER] Got a mistake with 3H68_OH_large.bcl 刘吉元 (Thu Nov 17 2011 - 05:54:18 PST)
- [AMBER] Spherical Coordinates & Pulling Ligand Sai Kumar Ramadugu (Thu Nov 17 2011 - 09:09:25 PST)
- [AMBER] Differentially restraining backbone and sidechain atoms from Chamber generated prmtop Joshua Adelman (Thu Nov 17 2011 - 11:09:32 PST)
- Re: [AMBER] large.bcl bug in MCPB Ben Roberts (Thu Nov 17 2011 - 15:19:48 PST)
- [AMBER] compiling pmemd in amber9 Vijay Manickam Achari (Thu Nov 17 2011 - 17:08:00 PST)
- [AMBER] Select cuda ID device in PMEMD Gonzalo Jimenez (Thu Nov 17 2011 - 19:14:34 PST)
- Re: [AMBER] How MCPB add ligand with a small molecule in*_siderchain.bcl JiYuan Liu (Thu Nov 17 2011 - 22:17:24 PST)
- [AMBER] Can't get the correct gaussian input name after runed *_sidechain.bcl in MCPB JiYuan Liu (Thu Nov 17 2011 - 23:12:33 PST)
- [AMBER] bonds problem in leap Qinghua Liao (Fri Nov 18 2011 - 05:32:16 PST)
- [AMBER] Segmentation fault - LeAP - Ring structure Volker Lesch (Fri Nov 18 2011 - 05:45:33 PST)
- [AMBER] problems with MCBP parametrization Andrew Voronkov (Fri Nov 18 2011 - 06:57:39 PST)
- [AMBER] how to add new groups to all_amino94.in Li, Yawen (MU-Student) (Fri Nov 18 2011 - 09:20:33 PST)
- [AMBER] generating frcmod files Soma Ghosh (Fri Nov 18 2011 - 09:51:07 PST)
- [AMBER] atom type requested that does not appear in the prep file arikcohen (Fri Nov 18 2011 - 16:25:09 PST)
- [AMBER] Order parameter subrata paul (Sat Nov 19 2011 - 05:48:26 PST)
- [AMBER] binding energy calculated by mm_pbsa.pl Qinghua Liao (Sun Nov 20 2011 - 00:10:18 PST)
- [AMBER] polymer blend Changwoo Do (Sun Nov 20 2011 - 09:45:07 PST)
- [AMBER] how to speed up nmode calculation using MMPBSA.MPI? Josmar R. da Rocha (Sun Nov 20 2011 - 18:51:03 PST)
- Re: [AMBER] Can't get the correct gaussian input name after runed*_sidechain.bcl in MCPB JiYuan Liu (Sun Nov 20 2011 - 20:33:30 PST)
- [AMBER] dynamics of isotopically labelled proteins vaibhav dixit (Mon Nov 21 2011 - 00:27:17 PST)
- [AMBER] Stability of water force fields Bruno Rodrigues (Mon Nov 21 2011 - 04:30:21 PST)
- Re: [AMBER] Can't get the correct gaussian input name afterruned*_sidechain.bcl in MCPB JiYuan Liu (Mon Nov 21 2011 - 05:05:55 PST)
- [AMBER] installation of amberTools on lion fails Jorgen Simonsen (Mon Nov 21 2011 - 06:47:36 PST)
- [AMBER] amber99sb in AMBER vs amber99sb in GROMACS or NAMD Thomas Evangelidis (Mon Nov 21 2011 - 12:00:50 PST)
- [AMBER] How to repair defect RNA residues? Crystal.CHIA-YU Ku (Mon Nov 21 2011 - 18:38:19 PST)
- [AMBER] How to use strip mask and receptor mask in the new mmpbsa.py? bin wang (Mon Nov 21 2011 - 18:40:24 PST)
- [AMBER] mpirun leila karami (Tue Nov 22 2011 - 01:31:27 PST)
- [AMBER] clustering analysis in ptraj takes too long time liu junjun (Tue Nov 22 2011 - 02:07:00 PST)
- [AMBER] AmberTools 1.5 compilation: Error importing cpinutil.py python modules! cpinutil will not work Vlad Cojocaru (Tue Nov 22 2011 - 02:27:22 PST)
- [AMBER] frcmod file for metal-amino acid complex Soma Ghosh (Tue Nov 22 2011 - 03:42:12 PST)
- [AMBER] how to obtain NOEs from MD trajectory ? Jose Borreguero (Tue Nov 22 2011 - 06:22:18 PST)
- [AMBER] makeDIST_RST error Charles Johnson (Tue Nov 22 2011 - 08:46:15 PST)
- [AMBER] compilation of Amber Tools 1.5 with GCC 4.6.2 with "-nopython" Vlad Cojocaru (Tue Nov 22 2011 - 12:55:55 PST)
- [AMBER] How to fix the installation problem of mopac Crystal.CHIA-YU Ku (Tue Nov 22 2011 - 16:53:59 PST)
- Re: [AMBER] How MCPB add ligand with a small moleculein*_siderchain.bcl JiYuan Liu (Tue Nov 22 2011 - 20:24:26 PST)
- [AMBER] ICST-Amber Install co nguyentruong (Wed Nov 23 2011 - 01:14:07 PST)
- [AMBER] MD of a Ca2+ dependent interaction Juan Carlos (Wed Nov 23 2011 - 04:13:55 PST)
- [AMBER] parameters in mm/pbsa calculations Qinghua Liao (Wed Nov 23 2011 - 04:45:42 PST)
- [AMBER] alpha helix structure consist of Alanine Tong Zhu (Wed Nov 23 2011 - 06:47:45 PST)
- [AMBER] BUG in NAB file nabgrm.y Chris Whittleston (Wed Nov 23 2011 - 08:48:49 PST)
- [AMBER] CCYX not recognized by ff03 in tleap Raik Grünberg (Wed Nov 23 2011 - 13:13:07 PST)
- [AMBER] combination of CHAMBER prmtop and pmemd.cuda is causing serious instability Marc van der Kamp (Thu Nov 24 2011 - 02:10:05 PST)
- [AMBER] Fwd: problems with MCBP parametrization Andrew Voronkov (Thu Nov 24 2011 - 12:28:16 PST)
- [AMBER] q4md-forcefieldtools.org announcement FyD (Thu Nov 24 2011 - 12:51:26 PST)
- [AMBER] General Amber FF Parameters Caglar Bayar (Thu Nov 24 2011 - 14:08:47 PST)
- [AMBER] 2-d PMF calculation with REMD caobb0214 (Thu Nov 24 2011 - 21:12:27 PST)
- [AMBER] Problem running Ptraj with CHARMM psf and dcd trajectory file Puspita Halder (Thu Nov 24 2011 - 22:28:07 PST)
- [AMBER] Parameters for heme C Konrad Hinsen (Fri Nov 25 2011 - 02:31:38 PST)
- [AMBER] Sander kanika sharma (Fri Nov 25 2011 - 03:09:23 PST)
- [AMBER] MMPBSA M. Reza Ganjalikhany (Fri Nov 25 2011 - 04:47:37 PST)
- [AMBER] question on antechamber generating parameters for a charged ligand fn1.rice.edu (Fri Nov 25 2011 - 06:17:42 PST)
- [AMBER] top2mol2 charges output in mol2 Jio M (Fri Nov 25 2011 - 08:19:32 PST)
- [AMBER] ANTECHAMBER: fatal error George Tzotzos (Sat Nov 26 2011 - 10:13:37 PST)
- [AMBER] cutoff distance again Yun Shi (Sat Nov 26 2011 - 11:09:38 PST)
- [AMBER] Fwd: Issue with running sander with SHAKE Andrew Voronkov (Sat Nov 26 2011 - 12:22:22 PST)
- [AMBER] Using nrespa with NPT Sasha Perkins (Sat Nov 26 2011 - 14:40:33 PST)
- Re: [AMBER] Using nrespa with NPT Bill Ross (Sat Nov 26 2011 - 14:46:45 PST)
- [AMBER] running of the sander in background in parallel state leila karami (Sun Nov 27 2011 - 03:30:09 PST)
- [AMBER] how to prepare 4:4:1 methanol–chloroform–water mixture rameshwar prajapati (Sun Nov 27 2011 - 09:35:00 PST)
- [AMBER] adding a phosphate group to a protein Petit, Chad (Sun Nov 27 2011 - 18:07:09 PST)
- [AMBER] Calculation of free energy of solvation M. Reza Ganjalikhany (Sun Nov 27 2011 - 20:29:05 PST)
- [AMBER] antechamber solvent Алексей Раевский (Mon Nov 28 2011 - 02:11:05 PST)
- [AMBER] NVIDIA GPU Event at Imperial College London Gould, Ian R (Mon Nov 28 2011 - 02:59:48 PST)
- Re: [AMBER] How MCPB add ligand with a smallmoleculein*_siderchain.bcl JiYuan Liu (Mon Nov 28 2011 - 04:26:24 PST)
- [AMBER] glibc error while running Xleap Vlad Cojocaru (Mon Nov 28 2011 - 04:53:04 PST)
- [AMBER] pdb file with a covalently linked nerve agent Urszula Uciechowska (Mon Nov 28 2011 - 05:45:49 PST)
- [AMBER] Restarting an MD run Beale, John (Mon Nov 28 2011 - 05:56:29 PST)
- Re: [AMBER] How MCPB add ligand with asmallmoleculein*_siderchain.bcl JiYuan Liu (Mon Nov 28 2011 - 09:34:26 PST)
- [AMBER] mdrun continuation Yao Yao (Mon Nov 28 2011 - 18:52:15 PST)
- Re: [AMBER] How MCPB add ligand withasmallmoleculein*_siderchain.bcl JiYuan Liu (Mon Nov 28 2011 - 19:47:18 PST)
- [AMBER] REMD umbrella sampling caobb0214 (Mon Nov 28 2011 - 20:13:47 PST)
- [AMBER] atom types error Urszula Uciechowska (Mon Nov 28 2011 - 23:15:29 PST)
- [AMBER] ptraj atomic fluctuation analysis Asmita Gupta (Tue Nov 29 2011 - 04:54:18 PST)
- [AMBER] sp3d hybridization Lee Lior (Tue Nov 29 2011 - 05:21:02 PST)
- [AMBER] leap problem: TER cards disappearing thomas.fox.boehringer-ingelheim.com (Tue Nov 29 2011 - 06:33:40 PST)
- [AMBER] amber - TUTORIAL A9 Atila Petrosian (Tue Nov 29 2011 - 06:56:52 PST)
- [AMBER] cis conformation of amino acid Yun Shi (Tue Nov 29 2011 - 08:56:44 PST)
- Re: [AMBER] Sufficient CPU cores/GPU ratio ? Jodi Ann Hadden (Tue Nov 29 2011 - 09:43:19 PST)
- [AMBER] chlorine naming question and parametrization Andrew Voronkov (Tue Nov 29 2011 - 11:53:35 PST)
- [AMBER] antechamber error kureeckal ramesh (Tue Nov 29 2011 - 22:30:14 PST)
- [AMBER] error by running MMPBSa Urszula Uciechowska (Wed Nov 30 2011 - 05:16:40 PST)
- [AMBER] D-N-Sulfate-glucosamine net charge Massimiliano Porrini (Wed Nov 30 2011 - 11:23:58 PST)
- [AMBER] ATOM TYPES for MODIFIED dCTP Jana Sefcikova 1 (Wed Nov 30 2011 - 12:32:39 PST)
- [AMBER] CUDA NaN error occuring at "wrapping first mol" Bill Sinko (Wed Nov 30 2011 - 15:54:31 PST)
- [AMBER] Fwd: error by running MMPBSa Ray Luo, Ph.D. (Wed Nov 30 2011 - 15:59:28 PST)
- Re: [AMBER] error in MD simulation Ross Walker (Wed Nov 30 2011 - 20:09:25 PST)
- Last message date: Wed Nov 30 2011 - 23:00:03 PST
- Archived on: Mon Dec 23 2024 - 05:54:23 PST
