./test_at_serial.sh make[1]: Entering directory `/opt/amber11/AmberTools/test' ./test_at_clean.sh cd mmpbsa_py && make -k clean make[2]: Entering directory `/opt/amber11/AmberTools/test/mmpbsa_py' cd EstRAL_Files && /bin/rm -f ?.top _AnteMMPBSA_* *.dif cd 01_Generalized_Born && /opt/amber11/bin/MMPBSA -clean > /dev/null && /bin/rm -f mmpbsa.* FINAL_*_MMPBSA.dat *.dif make[2]: [clean] Error 1 (ignored) cd 02_Poisson_Boltzmann && /opt/amber11/bin/MMPBSA -clean > /dev/null && /bin/rm -f mmpbsa.* FINAL_*_MMPBSA.dat *.dif make[2]: [clean] Error 1 (ignored) cd 03_Alanine_Scanning && /opt/amber11/bin/MMPBSA -clean > /dev/null && /bin/rm -f mmpbsa.* FINAL_*_MMPBSA.dat *.dif make[2]: [clean] Error 1 (ignored) cd 04_Per_Residue_Decomp && /opt/amber11/bin/MMPBSA -clean > /dev/null && /bin/rm -f mmpbsa.* FINAL_*_MMPBSA.dat *.dif make[2]: [clean] Error 1 (ignored) cd 05_Pairwise_Decomp && /opt/amber11/bin/MMPBSA -clean > /dev/null && /bin/rm -f mmpbsa.* FINAL_*_MMPBSA.dat *.dif make[2]: [clean] Error 1 (ignored) cd 06_NAB_Nmode && /opt/amber11/bin/MMPBSA -clean > /dev/null && /bin/rm -f mmpbsa.* FINAL_*_MMPBSA.dat *.dif make[2]: [clean] Error 1 (ignored) cd 07_Comprehensive && /opt/amber11/bin/MMPBSA -clean > /dev/null && /bin/rm -f mmpbsa.* FINAL_*_MMPBSA*.dat *.dif make[2]: [clean] Error 1 (ignored) cd 08_Stability && /opt/amber11/bin/MMPBSA -clean > /dev/null && /bin/rm -f mmpbsa.* FINAL_*_MMPBSA*.dat *.dif make[2]: [clean] Error 1 (ignored) cd 09_APBS_Poisson_Boltzmann && /opt/amber11/bin/MMPBSA -clean > /dev/null && /bin/rm -f mmpbsa.* FINAL_*_MMPBSA.dat *.dif make[2]: [clean] Error 1 (ignored) cd 10_QM_MMGBSA && /opt/amber11/bin/MMPBSA -clean > /dev/null && /bin/rm -f mmpbsa.* FINAL_*_MMPBSA.dat *.dif make[2]: [clean] Error 1 (ignored) cd 11_3D-RISM && /opt/amber11/bin/MMPBSA -clean > /dev/null && /bin/rm -f mmpbsa.* FINAL_*_MMPBSA.dat *.dif make[2]: [clean] Error 1 (ignored) make[2]: Leaving directory `/opt/amber11/AmberTools/test/mmpbsa_py' cd cpptraj && make -k clean make[2]: Entering directory `/opt/amber11/AmberTools/test/cpptraj' Cleaning all test directories: (find . -name 'test.out' -o -name 'valgrind.out' -o -name 'Thread.*' \ -o -name 'Test_Results.dat' | \ while read dif ;\ do \ rm -f $dif ;\ done ;\ ) make test.all OPT=clean make[3]: Entering directory `/opt/amber11/AmberTools/test/cpptraj' make[3]: Leaving directory `/opt/amber11/AmberTools/test/cpptraj' make bench.all OPT=clean make[3]: Entering directory `/opt/amber11/AmberTools/test/cpptraj' make[3]: Leaving directory `/opt/amber11/AmberTools/test/cpptraj' make[2]: Leaving directory `/opt/amber11/AmberTools/test/cpptraj' cd nab && make -k test make[2]: Entering directory `/opt/amber11/AmberTools/test/nab' Running test to make dna duplex: ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.duplex: Program error make[2]: *** [duplex_test] Error 1 Running test to computed 3DNA deformation energies: ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.deform: Program error make[2]: *** [deform_test] Error 1 Running Reflexive test: ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.reflexive: Program error make[2]: *** [reflexive_test] Error 1 Running test of hashed arrays: ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.hashed: Program error make[2]: *** [hashed_test] Error 1 Running test to compute chemical shifts (this tests many parts of the compiler and libraries) ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.shifts: Program error make[2]: *** [shifts_test] Error 1 Running test to do simple minimization (this tests the molecular mechanics interface) ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.sff: Program error make[2]: *** [sff_test] Error 1 Running test to do simple minimization with shake (this tests the molecular mechanics interface) ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.shake: Program error make[2]: *** [rattle_min_test] Error 1 Running test of fibre-diffraction module ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.fd: Program error make[2]: *** [fd_test] Error 1 Running test to do simple minimization (this tests the generalized Born implementation) ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.gb: Program error make[2]: *** [gb_test] Error 1 Running test to do simple minimization (this tests the generalized Born implementation) ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.xfin: Program error make[2]: *** [xfin_test] Error 1 Running test to do simple minimization (this tests the LCPO surface area) ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.gbsa: Program error make[2]: *** [gbsa_test] Error 1 Running test to do simple minimization (this tests the ao generalized Born implementation) ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.gb2: Program error make[2]: *** [gb2_test] Error 1 Running test to do molecular dynamics with rattle ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.rattle_md: Program error make[2]: *** [rattle_md_test] Error 1 Running test of randomized embedding ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.rembed: Program error make[2]: *** [rembed_test] Error 1 Running test to compute NAB energy of 3dfr minus waters. ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.dhfrndpmtx: Program error make[2]: *** [dhfrndpmtx_test] Error 1 Running test to compute GB Newton-Raphson and normal modes: ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.asp: Program error make[2]: *** [asp_test] Error 1 Running test to compute non-GB Newton-Raphson and normal modes: ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.aspnb: Program error make[2]: *** [aspnb_test] Error 1 Running test to create Amber force-field description ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.prm: Program error make[2]: *** [prm_test] Error 1 Running test to create a simple mmCIF file ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.cif: Program error make[2]: *** [cif_test] Error 1 Running test to do simple xmin minimization ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.xmin: Program error make[2]: *** [xmin_test] Error 1 Running test on netcdf files ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.netcdf: Program error make[2]: *** [netcdf_test] Error 1 Running test to do simple lmod optimization ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.lmod: Program error make[2]: *** [lmod_test] Error 1 Running test to compute GB normal modes using DSYEVD: ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.nmode1: Program error make[2]: *** [nmode1_test] Error 1 Running test to compute GB normal modes using DSAUPD: ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.nmode2: Program error make[2]: *** [nmode2_test] Error 1 Running test to compute Langevin modes: ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.nmode3: Program error make[2]: *** [nmode3_test] Error 1 Running test of the isotropic periodic sum technique ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.ips: Program error make[2]: *** [ips_test] Error 1 Running test to do simple minimization (libpbsa) (this tests the PBSA implementation) ../../bin/nab: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.pbsa: Program error make[2]: *** [pbsa_test] Error 1 make[2]: Target `test' not remade because of errors. make[2]: Leaving directory `/opt/amber11/AmberTools/test/nab' make[1]: *** [test.nab] Error 2 cd ptraj_rmsa && ./Run.rms ./Run.rms: Program error make[1]: [test.ptraj] Error 1 (ignored) cd ptraj_rms && ./Run.rms ptraj: test rms and 2drms commands ./Run.rms: Program error make[1]: [test.ptraj] Error 1 (ignored) cd ptraj_matrix && ./Run.matrix ptraj: analyze fluctuation matrices ./Run.matrix: Program error make[1]: [test.ptraj] Error 1 (ignored) cd ptraj_order && ./Run.order ptraj: calculate S^2 parameters and relaxation rates via IRED matrix ./Run.order: Program error make[1]: [test.ptraj] Error 1 (ignored) cd ptraj_trajectory && ./Run.ptraj ptraj: Test processing of trajectories with offsets and compression. ./Run.ptraj: Program error make[1]: [test.ptraj] Error 1 (ignored) cd ptraj_remd_netcdf && ./Run.ptraj netcdf.mod ptraj: Test processing of REMD trajectories. ./Run.ptraj: Program error make[1]: [test.ptraj] Error 1 (ignored) cd ptraj_comprehensive && ./Run.comprehensive netcdf.mod ptraj: Test multiple ptraj actions. ./Run.comprehensive: Program error make[1]: [test.ptraj] Error 1 (ignored) cd cpptraj && make -k test make[2]: Entering directory `/opt/amber11/AmberTools/test/cpptraj' make test.all make[3]: Entering directory `/opt/amber11/AmberTools/test/cpptraj' ************************************************************** TEST: /opt/amber11/AmberTools/test/cpptraj/Test_General CPPTRAJ: General tests /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: distance.dat: No such file or directory diffing distance.dat.save with distance.dat possible FAILURE: check distance.dat.dif ============================================================== cat: rmsd.dat: No such file or directory diffing rmsd.dat.save with rmsd.dat possible FAILURE: check rmsd.dat.dif ============================================================== cat: rmsda.dat: No such file or directory diffing rmsda.dat.save with rmsda.dat possible FAILURE: check rmsda.dat.dif ============================================================== cat: phi2.dat: No such file or directory diffing phi2.dat.save with phi2.dat possible FAILURE: check phi2.dat.dif ============================================================== cat: PhiPsi.dat: No such file or directory diffing PhiPsi.dat.save with PhiPsi.dat possible FAILURE: check PhiPsi.dat.dif ============================================================== cat: test.crd: No such file or directory diffing test.crd.save with test.crd possible FAILURE: check test.crd.dif ============================================================== cat: a1.dat: No such file or directory diffing a1.dat.save with a1.dat possible FAILURE: check a1.dat.dif ============================================================== cat: Restart/test.rst7.103: No such file or directory diffing test.rst7.103.save with Restart/test.rst7.103 possible FAILURE: check Restart/test.rst7.103.dif ============================================================== cat: test.nc: No such file or directory diffing test.nc.save with test.nc possible FAILURE: check test.nc.dif ============================================================== cat: r4.dat: No such file or directory diffing r4.dat.save with r4.dat possible FAILURE: check r4.dat.dif ============================================================== cat: a2.dat.gz: No such file or directory diffing a2.dat.gz.save with a2.dat.gz possible FAILURE: check a2.dat.gz.dif ============================================================== cat: a3.dat.bz2: No such file or directory diffing a3.dat.bz2.save with a3.dat.bz2 possible FAILURE: check a3.dat.bz2.dif ============================================================== cat: r2.dat: No such file or directory diffing r2.dat.save with r2.dat possible FAILURE: check r2.dat.dif ============================================================== cat: r3-nofit.dat: No such file or directory diffing r3-nofit.dat.save with r3-nofit.dat possible FAILURE: check r3-nofit.dat.dif ============================================================== ************************************************************** TEST: /opt/amber11/AmberTools/test/cpptraj/Test_Strip CPPTRAJ: One frame strip command test. /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: dummy.pdb: No such file or directory diffing dummy.pdb.save with dummy.pdb possible FAILURE: check dummy.pdb.dif ============================================================== cat: dummy.rst7.1: No such file or directory diffing dummy.rst7.1.save with dummy.rst7.1 possible FAILURE: check dummy.rst7.1.dif ============================================================== cat: strip.ChainA-tip3p.parm7: No such file or directory diffing strip.ChainA-tip3p.parm7.save with strip.ChainA-tip3p.parm7 possible FAILURE: check strip.ChainA-tip3p.parm7.dif ============================================================== ************************************************************** TEST: /opt/amber11/AmberTools/test/cpptraj/Test_Strip CPPTRAJ: Unstrip (Lig/Rec/Complex) command test. /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: complex.ChainA-tip3p.parm7: No such file or directory diffing strip.ChainA-tip3p.parm7.save with complex.ChainA-tip3p.parm7 possible FAILURE: check complex.ChainA-tip3p.parm7.dif ============================================================== cat: receptor.ChainA-tip3p.parm7: No such file or directory diffing receptor.ChainA-tip3p.parm7.save with receptor.ChainA-tip3p.parm7 possible FAILURE: check receptor.ChainA-tip3p.parm7.dif ============================================================== cat: ligand.ChainA-tip3p.parm7: No such file or directory diffing ligand.ChainA-tip3p.parm7.save with ligand.ChainA-tip3p.parm7 possible FAILURE: check ligand.ChainA-tip3p.parm7.dif ============================================================== cat: Ligand.crd: No such file or directory diffing Ligand.crd.save with Ligand.crd possible FAILURE: check Ligand.crd.dif ============================================================== ************************************************************** TEST: /opt/amber11/AmberTools/test/cpptraj/Test_BrokenTraj CPPTRAJ: Broken Traj: Running good trajectory. /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory CPPTRAJ: Broken Traj: Running broken trajectory. /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: goodrmsd.dat: No such file or directory cat: badrmsd.dat: No such file or directory diffing goodrmsd.dat with badrmsd.dat PASSED /bin/rm: cannot remove `badrmsd.dat': No such file or directory ============================================================== ************************************************************** TEST: /opt/amber11/AmberTools/test/cpptraj/ptraj_trajectory CPPTRAJ: Normal trajectory read with offsets. /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: rem.crd.combined: No such file or directory diffing rem.crd.save with rem.crd.combined possible FAILURE: check rem.crd.combined.dif ============================================================== CPPTRAJ: Gzipped trajectory read with offsets. /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: gzip.rem.crd.combined: No such file or directory diffing rem.crd.save with gzip.rem.crd.combined possible FAILURE: check gzip.rem.crd.combined.dif ============================================================== CPPTRAJ: Bzip2ed trajectory read with offsets. /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: bzip2.rem.crd.combined: No such file or directory diffing rem.crd.save with bzip2.rem.crd.combined possible FAILURE: check bzip2.rem.crd.combined.dif ============================================================== ************************************************************** TEST: /opt/amber11/AmberTools/test/cpptraj/ptraj_remd_netcdf CPPTRAJ: CRD Replica Trajectory Run with offset /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: d1.offset.dat: No such file or directory diffing d1.offset.dat.save with d1.offset.dat possible FAILURE: check d1.offset.dat.dif ============================================================== CPPTRAJ: CRD Replica Trajectory Run /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: d1.crd.dat: No such file or directory diffing d1.crd.dat.save with d1.crd.dat possible FAILURE: check d1.crd.dat.dif ============================================================== CPPTRAJ: NETCDF Replica Trajectory Run /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: d1.nc.dat: No such file or directory diffing d1.nc.dat.save with d1.nc.dat possible FAILURE: check d1.nc.dat.dif ============================================================== ************************************************************** TEST: /opt/amber11/AmberTools/test/cpptraj/Test_trajout_framerange CPPTRAJ: Trajout Frame Range /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: test.rst7.3: No such file or directory diffing test.rst7.3.save with test.rst7.3 possible FAILURE: check test.rst7.3.dif ============================================================== cat: test.rst7.5: No such file or directory diffing test.rst7.5.save with test.rst7.5 possible FAILURE: check test.rst7.5.dif ============================================================== cat: test.rst7.6: No such file or directory diffing test.rst7.6.save with test.rst7.6 possible FAILURE: check test.rst7.6.dif ============================================================== cat: test.rst7.7: No such file or directory diffing test.rst7.7.save with test.rst7.7 possible FAILURE: check test.rst7.7.dif ============================================================== cat: test.rst7.8: No such file or directory diffing test.rst7.8.save with test.rst7.8 possible FAILURE: check test.rst7.8.dif ============================================================== ************************************************************** TEST: /opt/amber11/AmberTools/test/cpptraj/Test_PerResRMSD CPPTRAJ: Per-Residue RMSD Test. /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: PerResRMSD.dat: No such file or directory diffing PerResRMSD.dat.save with PerResRMSD.dat possible FAILURE: check PerResRMSD.dat.dif ============================================================== ************************************************************** TEST: /opt/amber11/AmberTools/test/cpptraj/Test_DSSP CPPTRAJ: Secstruct (DSSP) command test. /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: dssp.dat: No such file or directory diffing dssp.dat.save with dssp.dat possible FAILURE: check dssp.dat.dif ============================================================== cat: dssp.sum.agr: No such file or directory diffing dssp.sum.agr.save with dssp.sum.agr possible FAILURE: check dssp.sum.agr.dif ============================================================== ************************************************************** TEST: /opt/amber11/AmberTools/test/cpptraj/Test_Hbond CPPTRAJ: Hbond command test. /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: nhb.dat: No such file or directory diffing nhb.dat.save with nhb.dat possible FAILURE: check nhb.dat.dif ============================================================== cat: avghb.dat: No such file or directory diffing avghb.dat.save with avghb.dat possible FAILURE: check avghb.dat.dif ============================================================== ************************************************************** TEST: /opt/amber11/AmberTools/test/cpptraj/ptraj_comprehensive CPPTRAJ: PTRAJ comprehensive tests. /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: phi: No such file or directory diffing cpptraj.phi.save with phi possible FAILURE: check phi.dif ============================================================== cat: psi: No such file or directory diffing cpptraj.psi.save with psi possible FAILURE: check psi.dif ============================================================== cat: omega: No such file or directory diffing cpptraj.omega.save with omega possible FAILURE: check omega.dif ============================================================== cat: dist_end_to_end.list: No such file or directory diffing cpptraj.dist_end_to_end.list.save with dist_end_to_end.list possible FAILURE: check dist_end_to_end.list.dif ============================================================== cat: test.mdcrd: No such file or directory diffing cpptraj.test.mdcrd.save with test.mdcrd possible FAILURE: check test.mdcrd.dif ============================================================== CPPTRAJ: PTRAJ comprehensive mdcrd -> netcdf test. /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory CPPTRAJ: PTRAJ comprehensive netcdf -> mdcrd test. /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: trajectory_test.mdcrd: No such file or directory diffing ../../ptraj_comprehensive/trajectory.mdcrd with trajectory_test.mdcrd possible FAILURE: check trajectory_test.mdcrd.dif ============================================================== ************************************************************** TEST: /opt/amber11/AmberTools/test/cpptraj/Test_Surf CPPTRAJ: Surface calculation test. /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: surf.dat: No such file or directory diffing surf.dat.save with surf.dat possible FAILURE: check surf.dat.dif ============================================================== ************************************************************** TEST: /opt/amber11/AmberTools/test/cpptraj/Test_Radgyr CPPTRAJ: Radius of gyration command test. /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: radgyr.dat: No such file or directory diffing radgyr.dat.save with radgyr.dat possible FAILURE: check radgyr.dat.dif ============================================================== cat: radgyr.mass.dat: No such file or directory diffing radgyr.mass.dat.save with radgyr.mass.dat possible FAILURE: check radgyr.mass.dat.dif ============================================================== ************************************************************** TEST: /opt/amber11/AmberTools/test/cpptraj/Test_Mask CPPTRAJ: Mask command test. /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: mask.out: No such file or directory diffing mask.out.save with mask.out possible FAILURE: check mask.out.dif ============================================================== ************************************************************** TEST: /opt/amber11/AmberTools/test/cpptraj/Test_RMSD CPPTRAJ: RMSD Test. /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: rmsd.dat: No such file or directory diffing rmsd.dat.save with rmsd.dat possible FAILURE: check rmsd.dat.dif ============================================================== CPPTRAJ: RMSD test with mass weighting. /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: rmsd.mass.dat: No such file or directory diffing rmsd.mass.dat.save with rmsd.mass.dat possible FAILURE: check rmsd.mass.dat.dif ============================================================== ************************************************************** TEST: /opt/amber11/AmberTools/test/cpptraj/Test_Mol2 CPPTRAJ: Mol2 Parm/Traj Read/Write Test. /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: L01.mol2: No such file or directory diffing L01.mol2.1.save with L01.mol2 possible FAILURE: check L01.mol2.dif ============================================================== cat: trpcage.mol2: No such file or directory diffing trpcage.mol2.1.save with trpcage.mol2 possible FAILURE: check trpcage.mol2.dif ============================================================== ************************************************************** TEST: /opt/amber11/AmberTools/test/cpptraj/Test_NAstruct CPPTRAJ: NAstruct command test. /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: BP.nastruct.dat: No such file or directory diffing BP.nastruct.dat.save with BP.nastruct.dat possible FAILURE: check BP.nastruct.dat.dif ============================================================== cat: BPstep.nastruct.dat: No such file or directory diffing BPstep.nastruct.dat.save with BPstep.nastruct.dat possible FAILURE: check BPstep.nastruct.dat.dif ============================================================== ************************************************************** TEST: /opt/amber11/AmberTools/test/cpptraj/Test_Pucker CPPTRAJ: Pucker command test (Altona & Sundaralingam) /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: pucker.dat: No such file or directory diffing pucker.dat.save with pucker.dat possible FAILURE: check pucker.dat.dif ============================================================== CPPTRAJ: Pucker command test (Cremer & Pople) /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: pucker2.dat: No such file or directory diffing pucker2.dat.save with pucker2.dat possible FAILURE: check pucker2.dat.dif ============================================================== ************************************************************** TEST: /opt/amber11/AmberTools/test/cpptraj/Test_Closest CPPTRAJ: Closest command test using first solvent atom. /opt/amber11/bin/cpptraj: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory cat: first.Closest.pdb: No such file or directory diffing first.Closest.pdb.save with first.Closest.pdb possible FAILURE: check first.Closest.pdb.dif ============================================================== cat: closestmols.dat: No such file or directory diffing closestmols.dat.save with closestmols.dat possible FAILURE: check closestmols.dat.dif ============================================================== cat: closest.ChainA-tip3p.parm7: No such file or directory diffing closest.ChainA-tip3p.parm7.save with closest.ChainA-tip3p.parm7 possible FAILURE: check closest.ChainA-tip3p.parm7.dif ============================================================== make[3]: Leaving directory `/opt/amber11/AmberTools/test/cpptraj' make[2]: Leaving directory `/opt/amber11/AmberTools/test/cpptraj' cd antechamber/top2mol2 && ./Run.top2mol2 ../../../bin/top2mol2: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory ./Run.top2mol2: Program error make[1]: [test.antechamber] Error 1 (ignored) cd antechamber/database && ./Run.database ../../../bin/database: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory Program error make[1]: [test.antechamber] Error 1 (ignored) cd antechamber/bondtype && ./Run.bondtype ./Run.bondtype: Program error: Command not found. make[1]: [test.antechamber] Error 1 (ignored) cd antechamber/c60 && ./Run.c60 ./Run.c60: Program error make[1]: [test.antechamber] Error 1 (ignored) cd antechamber/charmm && ./Run.charmm make[1]: [test.antechamber] Error 1 (ignored) cd antechamber/chemokine && ./Run.1b2t ./Run.1b2t: Program error make[1]: [test.antechamber] Error 1 (ignored) cd antechamber/tp && ./Run.tp ./Run.tp: Program error make[1]: [test.antechamber] Error 1 (ignored) cd antechamber/ash && ./Run.ash ./Run.ash: Program error make[1]: [test.antechamber] Error 1 (ignored) cd antechamber/sustiva && ./Run.sustiva ./Run.sustiva: Program error make[1]: [test.antechamber] Error 1 (ignored) cd antechamber/fluorescein && ./Run.fluorescein ./Run.fluorescein: Program error make[1]: [test.antechamber] Error 1 (ignored) cd antechamber/guanine_amber && ./Run.guanine_amber ./Run.guanine_amber: Program error make[1]: [test.antechamber] Error 1 (ignored) cd antechamber/fpph && ./Run.fpph_resp ./Run.fpph_resp: Program error make[1]: [test.antechamber] Error 1 (ignored) cd antechamber/residuegen && ./Run.ala ./Run.ala: Program error make[1]: [test.antechamber] Error 1 (ignored) cd leap && ./Run.tleap AMBERHOME is set to /opt/amber11 Running leap tests on ./tleap -> ../../bin/teLeap building force field libraries: '91 ff.. ./Run.tleap: Program error in leap make[1]: *** [test.leap] Error 1 cd sleap && make -k test make[2]: Entering directory `/opt/amber11/AmberTools/test/sleap' /bin/rm -f `find . -name "*.dif"` /bin/rm -f TEST_FAILURES.diff cd mdlsdf; ./Run.mdlsdf diffing crown_2.sdf.save with crown_2.sdf PASSED ============================================================== cd tripos; ./Run.tripos diffing wy.mol2.save with wy.mol2 PASSED ============================================================== cd pdbent; ./Run.pdbent1 diffing 1hpv.mol2.save with 1hpv.mol2 PASSED ============================================================== cd pdbent; ./Run.pdbent2 diffing mdl_1hpv.mol2.save with mdl_1hpv.mol2 PASSED ============================================================== cd offlib; ./Run.off diffing hpv.off.save with hpv.off PASSED ============================================================== cd source; ./Run.source diffing source.out.save with source.out PASSED ============================================================== cd prmtop; ./Run.prmtop1 diffing hpv.top.save with hpv.top PASSED ============================================================== diffing hpv.xyz.save with hpv.xyz PASSED ============================================================== cd prmtop; ./Run.prmtop2 This is a long test; please wait patiently... diffing box.out.save with box.out PASSED ============================================================== diffing hpv_box.top.save with hpvbox.top PASSED ============================================================== cd prmtop; ./Run.prmtop3 This is a long test; please wait patiently... diffing hpv_cap.top.save with hpv_cap.top PASSED ============================================================== cd prmtop; ./Run.prmtoppol diffing ubqpol.top.save with ubqpol.top PASSED ============================================================== diffing ubqpol.xyz.save with ubqpol.xyz PASSED ============================================================== cd solvate; ./Run.solvatebox This is a long test; please wait patiently... diffing hpvbox.pdb.save with hpvbox.pdb PASSED ============================================================== diffing hpvbox.top.save with hpvbox.top PASSED ============================================================== cd solvate; ./Run.solvatebox_closeness This is a long test; please wait patiently... diffing hpvbox_closeness.pdb.save with hpvbox_closeness.pdb PASSED ============================================================== cd solvate; ./Run.solvatecap diffing hpvcap.pdb.save with hpvcap.pdb PASSED ============================================================== cd solvate; ./Run.solvateoct This is a long test; please wait patiently... diffing hpvoct.pdb.save with hpvoct.pdb PASSED ============================================================== diffing hpvoct.top.save with hpvoct.top PASSED ============================================================== cd solvate; ./Run.solvateshell This is a long test; please wait patiently... diffing hpvshell.pdb.save with hpvshell.pdb PASSED ============================================================== cd amoeba; ./Run.amoeba diffing jac_2.prmtop.save with jac_2.prmtop PASSED ============================================================== cd amoeba; ./Run.amoeba_sol diffing hpv.prmtop.save with hpv.prmtop PASSED ============================================================== cd builder; ./Run.builder diffing water.mol2.save with water.mol2 PASSED ============================================================== diffing wat2.mol2.save with wat2.mol2 PASSED ============================================================== cd builder; ./Run.delete diffing ala_1.mol2.save with ala_1.mol2 PASSED ============================================================== diffing ala_2.mol2.save with ala_2.mol2 PASSED ============================================================== cd addions; ./Run.addions1 diffing hpv_ion.pdb.save with hpv_ion.pdb PASSED ============================================================== cd addions; ./Run.addions2 diffing hpv_ion2.pdb.save with hpv_ion2.pdb PASSED ============================================================== cd addions; ./Run.addions3 diffing 1zik_ion.mol2.save with 1zik_ion.mol2 PASSED ============================================================== cd molinfo; ./Run.molinfo diffing leap.out.save with leap.out PASSED ============================================================== cd polymer; ./Run.polymer diffing combine.mol2.save with combine.mol2 PASSED ============================================================== diffing sequence.mol2.save with sequence.mol2 PASSED ============================================================== cd polymer; ./Run.impose diffing impose.out.save with impose.out PASSED ============================================================== diffing impose.mol2.save with impose.mol2 PASSED ============================================================== cd polymer; ./Run.polymer2 diffing aa.mol2.save with aa.mol2 PASSED ============================================================== cd polymer; ./Run.zmatrix diffing zmatrix.out.save with zmatrix.out PASSED ============================================================== diffing meoh.mol2.save with meoh.mol2 PASSED ============================================================== cd bondbydis; ./Run.bondbydis diffing wy.sdf.save with wy.sdf PASSED ============================================================== cd DNA; ./Run.DNA1 diffing 132d.mol2.save with 132d.mol2 PASSED ============================================================== cd DNA; ./Run.DNA2 diffing 32d.top.save with 32d.top PASSED ============================================================== cd oldleap; ./Run.oldleap diffing ff91/all_amino91.lib.save with ff91/all_amino91.lib PASSED ============================================================== diffing ff91/all_aminont91.lib.save with ff91/all_aminont91.lib PASSED ============================================================== diffing ff91/all_aminoct91.lib.save with ff91/all_aminoct91.lib PASSED ============================================================== diffing ff91/all_nucleic91.lib.save with ff91/all_nucleic91.lib PASSED ============================================================== diffing ff94/all_amino94.lib.save with ff94/all_amino94.lib PASSED ============================================================== diffing ff94/all_aminont94.lib.save with ff94/all_aminont94.lib PASSED ============================================================== diffing ff94/all_aminoct94.lib.save with ff94/all_aminoct94.lib PASSED ============================================================== diffing ff94/all_nucleic94.lib.save with ff94/all_nucleic94.lib PASSED ============================================================== diffing ff94/all_aminoan94.top.save with ff94/all_aminoan94.top PASSED ============================================================== diffing ff94/all_aminoan94.crd.save with ff94/all_aminoan94.crd PASSED ============================================================== diffing ff94/all_aminonc94.top.save with ff94/all_aminonc94.top PASSED ============================================================== diffing ff94/all_aminonc94.crd.save with ff94/all_aminonc94.crd PASSED ============================================================== diffing ff94/all_dna94.top.save with ff94/all_dna94.top PASSED ============================================================== diffing ff94/all_dna94.crd.save with ff94/all_dna94.crd PASSED ============================================================== diffing ff94/all_rna94.top.save with ff94/all_rna94.top PASSED ============================================================== diffing ff94/all_rna94.crd.save with ff94/all_rna94.crd PASSED ============================================================== cd disulfide; ./Run.auto diffing crn.mol2.save with crn.mol2 PASSED ============================================================== cd disulfide; ./Run.manu diffing crn.mol2.save with crn.mol2 PASSED ============================================================== cd disulfide; ./Run.auto.H diffing crn.H.mol2.save with crn.H.mol2 PASSED ============================================================== diffing crn.top.save with crn.top PASSED ============================================================== diffing crn.xyz.save with crn.xyz PASSED ============================================================== cd propdiol; ./Run.test1 diffing mol.prmtop.save with mol.prmtop PASSED ============================================================== diffing test1.out.save with test1.out PASSED ============================================================== cd propdiol; ./Run.test2 diffing mol2.prmtop.save with mol2.prmtop PASSED ============================================================== diffing test2.out.save with test2.out PASSED ============================================================== cd glycam; ./Run.test1 diffing n.pdb.save with n.pdb PASSED ============================================================== cd transform; ./Run.translate diffing meoh_trans1.mol2.save with meoh_trans1.mol2 PASSED ============================================================== diffing meoh_trans2.mol2.save with meoh_trans2.mol2 PASSED ============================================================== cd 14scale; ./Run.14scale_test1 diffing nma1.prmtop.save with nma1.prmtop PASSED ============================================================== cd 14scale; ./Run.14scale_test2 diffing nma2.prmtop.save with nma2.prmtop PASSED ============================================================== ./cpTESTF.sh make[2]: Leaving directory `/opt/amber11/AmberTools/test/sleap' cd resp && ./Run.ade RESP stage 1: ../../bin/resp: error while loading shared libraries: libifport.so.5: cannot open shared object file: No such file or directory ./Run.ade: Program error make[1]: *** [test.resp] Error 1 cd pbsa_dmp && ./Run.dmp.min ../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.dmp.min: Program error make[1]: [test.pbsa] Error 1 (ignored) cd pbsa_bcopt && ./Run.dmp.min ../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.dmp.min: Program error make[1]: [test.pbsa] Error 1 (ignored) cd pbsa_saopt && ./Run.dmp.min ../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.dmp.min: Program error make[1]: [test.pbsa] Error 1 (ignored) cd pbsa_tri && ./Run.dmp.min ../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.dmp.min: Program error make[1]: [test.pbsa] Error 1 (ignored) cd pbsa_lpb && ./Run.lsolver.min ../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.lsolver.min: Program error make[1]: [test.pbsa] Error 1 (ignored) cd pbsa_tsr && ./Run.tsrb.min ../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.tsrb.min: Program error make[1]: [test.pbsa] Error 1 (ignored) cd pbsa_radi && ./Run.ion.min ../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.ion.min: Program error make[1]: [test.pbsa] Error 1 (ignored) cd pbsa_npb && ./test pbsa.ncg.bc5 ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.110D.min: Program error pbsa.ncg.bc6 ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.110D.min: Program error pbsa.nsor.bc5 ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.110D.min: Program error pbsa.nsor.bc6 ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.110D.min: Program error pbsa.asor.bc5 ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.110D.min: Program error pbsa.asor.bc6 ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.110D.min: Program error pbsa.dsor.bc5 ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.110D.min: Program error pbsa.dsor.bc6 ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.110D.min: Program error pbsa.ntmg.bc5 ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.110D.min: Program error pbsa.nticcg.bc5 ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.110D.min: Program error pbsa.nticcg.bc6 ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.110D.min: Program error cd pbsa_frc && ./test dbf_0.argasp ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.argasp.min: Program error ============================================================== dbf_0.dadt ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.dadt.min: Program error ============================================================== dbf_0.dgdc ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.dgdc.min: Program error ============================================================== dbf_0.lysasp ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.lysasp.min: Program error ============================================================== dbf_0.polyALA ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.polyALA.min: Program error ============================================================== dbf_0.polyAT ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.polyAT.min: Program error ============================================================== dbf_1.argasp ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.argasp.min: Program error ============================================================== dbf_1.dadt ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.dadt.min: Program error ============================================================== dbf_1.dgdc ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.dgdc.min: Program error ============================================================== dbf_1.lysasp ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.lysasp.min: Program error ============================================================== dbf_1.polyALA ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.polyALA.min: Program error ============================================================== dbf_1.polyAT ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.polyAT.min: Program error ============================================================== dbf_2.argasp ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.argasp.min: Program error ============================================================== dbf_2.dadt ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.dadt.min: Program error ============================================================== dbf_2.dgdc ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.dgdc.min: Program error ============================================================== dbf_2.lysasp ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.lysasp.min: Program error ============================================================== dbf_2.polyALA ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.polyALA.min: Program error ============================================================== dbf_2.polyAT ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.polyAT.min: Program error ============================================================== dbf_3.argasp ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.argasp.min: Program error ============================================================== dbf_3.dadt ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.dadt.min: Program error ============================================================== dbf_3.dgdc ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.dgdc.min: Program error ============================================================== dbf_3.lysasp ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.lysasp.min: Program error ============================================================== dbf_3.polyALA ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.polyALA.min: Program error ============================================================== dbf_3.polyAT ../../../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.polyAT.min: Program error ============================================================== cd pbsa_ipb2 && ./Run.110D.min ../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.110D.min: Program error make[1]: [test.pbsa] Error 1 (ignored) cd pbsa_delphi && ./Run.1az6.min ../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.1az6.min: Program error make[1]: [test.pbsa] Error 1 (ignored) cd pbsa_IIM && ./Run.IIM.min ../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.IIM.min: Program error make[1]: [test.pbsa] Error 1 (ignored) cd pbsa_ligand && ./Run.t4bnz.min ../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.t4bnz.min: Program error make[1]: [test.pbsa] Error 1 (ignored) cd pbsa_mbfocus && ./test working on ./Run.mb ../../bin/pbsa: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run.mb: Program error make[1]: [test.pbsa] Error 1 (ignored) cd mmpbsa_py && make test make[2]: Entering directory `/opt/amber11/AmberTools/test/mmpbsa_py' cd 01_Generalized_Born && ./Run.GB ./Run.GB: Program error make[2]: *** [GB] Error 1 cd 02_Poisson_Boltzmann && ./Run.PB ./Run.PB: Program error make[2]: *** [PB] Error 1 cd 03_Alanine_Scanning && ./Run.ALA ./Run.ALA: Program error make[2]: *** [ALA] Error 1 cd 04_Per_Residue_Decomp && ./Run.PerRes ./Run.PerRes: Program error make[2]: *** [DECOMP] Error 1 cd 06_NAB_Nmode && ./Run.nmode ./Run.nmode: Program error make[2]: *** [NAB] Error 1 cd 07_Comprehensive && ./Run.comprehensive ./Run.comprehensive: Program error make[2]: *** [COMPREHENSIVE] Error 1 cd 08_Stability && ./Run.stability ./Run.stability: Program error make[2]: *** [STABILITY] Error 1 cd 09_APBS_Poisson_Boltzmann && ./Run.PB This is a test for sander.APBS, but sander.APBS cannot be found. Install sander.APBS in order to run this test. cd 10_QM_MMGBSA && ./Run.QMMMGBSA ./Run.QMMMGBSA: Program error make[2]: *** [QMMM] Error 1 cd 11_3D-RISM && ./Run.rism3d ./Run.rism3d: Program error make[2]: *** [3DRISM] Error 1 make[2]: Target `test' not remade because of errors. make[2]: Leaving directory `/opt/amber11/AmberTools/test/mmpbsa_py' make[1]: *** [test.mmpbsa] Error 2 cd ambpdb && ./Run.ambpdb ../../bin/ambpdb: error while loading shared libraries: libifport.so.5: cannot open shared object file: No such file or directory ./Run.ambpdb: Program error make[1]: [test.ambpdb] Error 1 (ignored) cd ambpdb_first_protein && ./Run.ambpdb ../../bin/ambpdb: error while loading shared libraries: libifport.so.5: cannot open shared object file: No such file or directory ./Run.ambpdb: Program error make[1]: [test.ambpdb] Error 1 (ignored) cd ambpdb_first_rna && ./Run.ambpdb ../../bin/ambpdb: error while loading shared libraries: libifport.so.5: cannot open shared object file: No such file or directory ./Run.ambpdb: Program error make[1]: [test.ambpdb] Error 1 (ignored) cd elsize && ./Run.elsize diffing elsize_out.trxox.save with elsize_out.trxox PASSED ============================================================== cd ./chamber/trans-but-2-ene && ./Run /bin/rm: No match. ./Run: Program error make[1]: [test.chamber] Error 1 (ignored) cd ./chamber/ala_ala_ala && ./Run /bin/rm: No match. ./Run: Program error make[1]: [test.chamber] Error 1 (ignored) cd ./chamber/poly_pro_gas && ./Run.poly_pro_gas_chamber ./Run.poly_pro_gas_chamber: Program error make[1]: [test.chamber] Error 1 (ignored) cd ./chamber/glucose && ./Run /bin/rm: No match. ./Run: Program error make[1]: [test.chamber] Error 1 (ignored) cd ./chamber/dhfr_gas && ./Run.dhfr_gas_chamber ./Run.dhfr_gas_chamber: Program error make[1]: [test.chamber] Error 1 (ignored) cd ./chamber/dhfr_cmap_pbc && ./Run.dhfr_cmap_pbc_chamber /bin/rm: No match. ./Run.dhfr_cmap_pbc_chamber: Program error make[1]: [test.chamber] Error 1 (ignored) cd ./sqm/c2h2 && ./Run ../../../bin/sqm: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run: Program error make[1]: [test.sqm] Error 1 (ignored) cd ./sqm/ch3f && ./Run ../../../bin/sqm: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run: Program error make[1]: [test.sqm] Error 1 (ignored) cd ./sqm/nma && ./Run DFTB SLKO files not found - Skipping DFTB tests... ../../../bin/sqm: error while loading shared libraries: libsvml.so: cannot open shared object file: No such file or directory ./Run: Program error make[1]: [test.sqm] Error 1 (ignored) if [ -n "" ]; then cd ./rism1d/spc-kh && ./Run.spc; fi if [ -n "" ]; then cd ./rism1d/spc-psen && ./Run.spc-nacl-3; fi if [ -n "" ]; then cd ./rism1d/spc-hnc && ./Run.spc-lj; fi if [ -n "" ]; then cd ./rism1d/spc-mv0 && ./Run.spc; fi if [ -n "" ]; then cd ./rism1d/lj-py && ./Run.lj; fi if [ -n "" ]; then cd ./rism1d/tip3p-kh && ./Run.tip3p; fi Finished test suite for AmberTools at Wed Jul 20 11:32:41 IST 2011. make[1]: Target `test.serial' not remade because of errors. make[1]: Leaving directory `/opt/amber11/AmberTools/test' 72 file comparisons passed 58 file comparisons failed 325 tests experienced errors Test log file saved as logs/test_at_serial/2011-07-20_11-30-51.log Test diffs file saved as logs/test_at_serial/2011-07-20_11-30-51.diff