possible FAILURE:  check leap.out.dif
/Users/jennifer.muzyka/opt/amber11/AmberTools/test/antechamber/sustiva
1,34d0
< -s: Ignoring startup file: leaprc
< -f: Source leap.in.
< Welcome to LEaP!
< Sourcing: ./leap.in
< Log file: ./leap.log
< Reading title:
< AMBER General Force Field for organic molecules (Version 1.4, March 2010) add. info. at the end
< Loading parameters: ./frcmod
< Reading force field modification type file (frcmod)
< Reading title:
< remark goes here
< Loading Mol2 file: ./sustiva.mol2
< Reading MOLECULE named SUS
< Checking Unit.
< Building topology.
< Building atom parameters.
< Building bond parameters.
< Building angle parameters.
< Building proper torsion parameters.
< 1-4: angle 7 12 duplicates bond ('triangular' bond) or angle ('square' bond)
< 1-4: angle 7 9 duplicates bond ('triangular' bond) or angle ('square' bond)
< 1-4: angle 9 12 duplicates bond ('triangular' bond) or angle ('square' bond)
< Building improper torsion parameters.
<  total 8 improper torsions applied
< Building H-Bond parameters.
< Not Marking per-residue atom chain types.
< Marking per-residue atom chain types.
<   (Residues lacking connect0/connect1 -
<    these don't have chain types marked:
< 	res	total affected
< 	SUS	1
<   )
<  (no restraints)
< 	Quit
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