[root@bif4 src]# make serial Starting installation of Amber11 (serial) at Wed Jun 29 12:42:02 IST 2011. cd lib && make install make[1]: Entering directory `/usr/local/amber11/AmberTools/src/lib' cpp -traditional -P -DBINTRAJ new2oldparm.f > _new2oldparm.f gfortran -c -O0 -o new2oldparm.o _new2oldparm.f gfortran -o new2oldparm new2oldparm.o \ nxtsec.o mv new2oldparm /usr/local/amber11/bin /bin/rm -f _*.f make[1]: Leaving directory `/usr/local/amber11/AmberTools/src/lib' cd addles && make install make[1]: Entering directory `/usr/local/amber11/src/addles' cpp -traditional lesmain.f > _lesmain.f gfortran -c -o lesmain.o _lesmain.f cpp -traditional addspace.f > _addspace.f gfortran -c -o addspace.o _addspace.f cpp -traditional readprm.f > _readprm.f gfortran -c -o readprm.o _readprm.f cpp -traditional writprm.f > _writprm.f gfortran -c -o writprm.o _writprm.f cpp -traditional readcrd.f > _readcrd.f gfortran -c -o readcrd.o _readcrd.f cpp -traditional writcrd.f > _writcrd.f gfortran -c -o writcrd.o _writcrd.f cpp -traditional pick.f > _pick.f gfortran -c -o pick.o _pick.f cpp -traditional rline.f > _rline.f gfortran -c -o rline.o _rline.f cpp -traditional nxt.f > _nxt.f gfortran -c -o nxt.o _nxt.f cpp -traditional intgr.f > _intgr.f gfortran -c -o intgr.o _intgr.f cpp -traditional find.f > _find.f gfortran -c -o find.o _find.f cpp -traditional of.f > _of.f gfortran -c -o of.o _of.f cpp -traditional geti.f > _geti.f gfortran -c -o geti.o _geti.f cpp -traditional unit.f > _unit.f gfortran -c -o unit.o _unit.f cpp -traditional getc.f > _getc.f gfortran -c -o getc.o _getc.f cpp -traditional alert.f > _alert.f gfortran -c -o alert.o _alert.f cpp -traditional echo.f > _echo.f gfortran -c -o echo.o _echo.f cpp -traditional get4c.f > _get4c.f gfortran -c -o get4c.o _get4c.f cpp -traditional getd.f > _getd.f gfortran -c -o getd.o _getd.f cpp -traditional wlesprm.f > _wlesprm.f gfortran -c -o wlesprm.o _wlesprm.f cpp -traditional lesprm.f > _lesprm.f gfortran -c -o lesprm.o _lesprm.f cpp -traditional les2prm.f > _les2prm.f gfortran -c -o les2prm.o _les2prm.f cpp -traditional checksz.f > _checksz.f gfortran -c -o checksz.o _checksz.f cpp -traditional addspace_atm1st.f > _addspace_atm1st.f gfortran -c -o addspace_atm1st.o _addspace_atm1st.f cd ../lib && make random.o mexit.o nxtsec.o make[2]: Entering directory `/usr/local/amber11/AmberTools/src/lib' make[2]: `random.o' is up to date. make[2]: `mexit.o' is up to date. make[2]: `nxtsec.o' is up to date. make[2]: Leaving directory `/usr/local/amber11/AmberTools/src/lib' gfortran -o addles lesmain.o addspace.o readprm.o writprm.o readcrd.o writcrd.o pick.o rline.o nxt.o intgr.o find.o of.o geti.o unit.o getc.o alert.o echo.o get4c.o getd.o wlesprm.o lesprm.o les2prm.o checksz.o addspace_atm1st.o ../lib/random.o ../lib/mexit.o ../lib/nxtsec.o mv addles /usr/local/amber11/bin make[1]: Leaving directory `/usr/local/amber11/src/addles' cd sander && make serial make[1]: Entering directory `/usr/local/amber11/src/sander' cd ../../AmberTools/src/netcdf/src && make install make[2]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src' Making install in f90 make[3]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/f90' make[4]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/f90' make[4]: Nothing to be done for `install-exec-am'. test -z "/usr/local/amber11/AmberTools/share/man/man3" || mkdir -p -- "/usr/local/amber11/AmberTools/share/man/man3" /usr/bin/install -c -m 644 './netcdf_f90.3' '/usr/local/amber11/AmberTools/share/man/man3/netcdf_f90.3' test -z "/usr/local/amber11/AmberTools/include" || mkdir -p -- "/usr/local/amber11/AmberTools/include" /usr/bin/install -c -m 644 'typesizes.mod' '/usr/local/amber11/AmberTools/include/typesizes.mod' /usr/bin/install -c -m 644 'netcdf.mod' '/usr/local/amber11/AmberTools/include/netcdf.mod' make[4]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/f90' make[3]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/f90' Making install in fortran make[3]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/fortran' make[4]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/fortran' test -z "/usr/local/amber11/AmberTools/lib" || mkdir -p -- "/usr/local/amber11/AmberTools/lib" test -z "/usr/local/amber11/AmberTools/include" || mkdir -p -- "/usr/local/amber11/AmberTools/include" /usr/bin/install -c -m 644 'netcdf.inc' '/usr/local/amber11/AmberTools/include/netcdf.inc' test -z "/usr/local/amber11/AmberTools/share/man/man3" || mkdir -p -- "/usr/local/amber11/AmberTools/share/man/man3" /usr/bin/install -c -m 644 './netcdf_f77.3' '/usr/local/amber11/AmberTools/share/man/man3/netcdf_f77.3' make[4]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/fortran' make[3]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/fortran' Making install in libsrc make[3]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/libsrc' make[4]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/libsrc' test -z "/usr/local/amber11/AmberTools/lib" || mkdir -p -- "/usr/local/amber11/AmberTools/lib" /bin/sh ../libtool --mode=install /usr/bin/install -c 'libnetcdf.la' '/usr/local/amber11/AmberTools/lib/libnetcdf.la' /usr/bin/install -c .libs/libnetcdf.lai /usr/local/amber11/AmberTools/lib/libnetcdf.la /usr/bin/install -c .libs/libnetcdf.a /usr/local/amber11/AmberTools/lib/libnetcdf.a chmod 644 /usr/local/amber11/AmberTools/lib/libnetcdf.a ranlib /usr/local/amber11/AmberTools/lib/libnetcdf.a PATH="$PATH:/sbin" ldconfig -n /usr/local/amber11/AmberTools/lib ---------------------------------------------------------------------- Libraries have been installed in: /usr/local/amber11/AmberTools/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/usr/local/amber11/AmberTools/include" || mkdir -p -- "/usr/local/amber11/AmberTools/include" /usr/bin/install -c -m 644 'netcdf.h' '/usr/local/amber11/AmberTools/include/netcdf.h' test -z "/usr/local/amber11/AmberTools/share/man/man3" || mkdir -p -- "/usr/local/amber11/AmberTools/share/man/man3" /usr/bin/install -c -m 644 './netcdf.3' '/usr/local/amber11/AmberTools/share/man/man3/netcdf.3' make[4]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/libsrc' make[3]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/libsrc' Making install in nctest make[3]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/nctest' make[4]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/nctest' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/nctest' make[3]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/nctest' Making install in ncgen make[3]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/ncgen' make[4]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/ncgen' test -z "/usr/local/amber11/AmberTools/bin" || mkdir -p -- "/usr/local/amber11/AmberTools/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c 'ncgen' '/usr/local/amber11/AmberTools/bin/ncgen' /usr/bin/install -c ncgen /usr/local/amber11/AmberTools/bin/ncgen test -z "/usr/local/amber11/AmberTools/share/man/man1" || mkdir -p -- "/usr/local/amber11/AmberTools/share/man/man1" /usr/bin/install -c -m 644 './ncgen.1' '/usr/local/amber11/AmberTools/share/man/man1/ncgen.1' make[4]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/ncgen' make[3]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/ncgen' Making install in ncdump make[3]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/ncdump' make[4]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/ncdump' test -z "/usr/local/amber11/AmberTools/bin" || mkdir -p -- "/usr/local/amber11/AmberTools/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c 'ncdump' '/usr/local/amber11/AmberTools/bin/ncdump' /usr/bin/install -c ncdump /usr/local/amber11/AmberTools/bin/ncdump test -z "/usr/local/amber11/AmberTools/share/man/man1" || mkdir -p -- "/usr/local/amber11/AmberTools/share/man/man1" /usr/bin/install -c -m 644 './ncdump.1' '/usr/local/amber11/AmberTools/share/man/man1/ncdump.1' make[4]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/ncdump' make[3]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/ncdump' Making install in nf_test make[3]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/nf_test' make[4]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/nf_test' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/nf_test' make[3]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/nf_test' Making install in nc_test make[3]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/nc_test' make[4]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/nc_test' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/nc_test' make[3]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/nc_test' Making install in examples make[3]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples' Making install in C make[4]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples/C' make[5]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples/C' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples/C' make[4]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples/C' Making install in CDL make[4]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples/CDL' make[5]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples/CDL' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples/CDL' make[4]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples/CDL' Making install in F77 make[4]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples/F77' make[5]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples/F77' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples/F77' make[4]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples/F77' Making install in F90 make[4]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples/F90' make install-am make[5]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples/F90' make[6]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples/F90' make[6]: Nothing to be done for `install-exec-am'. make[6]: Nothing to be done for `install-data-am'. make[6]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples/F90' make[5]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples/F90' make[4]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples/F90' make[4]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples' make[5]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples' make[4]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples' make[3]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src/examples' make[3]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src' make[4]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src' make[4]: Nothing to be done for `install-exec-am'. make install-data-hook make[5]: Entering directory `/usr/local/amber11/AmberTools/src/netcdf/src' +-------------------------------------------------------------+ | CAUTION: | | | | If you have not already run "make check", then we strongly | | recommend you do so. It does not take very long. | | | | Before using netCDF to store important data, test your | | build with "make check". | | | | NetCDF is tested nightly on many platforms at Unidata | | but your platform is probably different in some ways. | | | | If any tests fail, please see the netCDF web site: | | http://www.unidata.ucar.edu/software/netcdf/ | | | | NetCDF is developed and maintained at the Unidata Program | | Center. Unidata provides a broad array of data and software | | tools for use in geoscience education and research. | | http://www.unidata.ucar.edu | +-------------------------------------------------------------+ make[5]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src' make[4]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src' make[3]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src' make[2]: Leaving directory `/usr/local/amber11/AmberTools/src/netcdf/src' cp ../../AmberTools/src/netcdf/include/*.mod . cp: cannot stat `../../AmberTools/src/netcdf/include/*.mod': No such file or directory make[1]: *** [netcdf.mod] Error 1 make[1]: Leaving directory `/usr/local/amber11/src/sander' make: *** [serial] Error 2 [root@bif4 src]# make check make: *** No rule to make target `check'. Stop.