Re: [AMBER] possible problem with periodic cell

From: Bruno Rodrigues <bbrodrigues.gmail.com>
Date: Thu, 28 Jul 2011 18:55:02 -0300

yeap, but why did iwrap shifted the entire system?

I opened both of them on VMD.
The one with iwrap = 1 represents the Right, while
iwrap = 0 is the left one.

You can see that iwrap shifted everything, and also paste the DNA at the
border of the box.



On Thu, Jul 28, 2011 at 6:34 PM, Bill Ross <ross.cgl.ucsf.edu> wrote:

> The origin is normally at the corner of the box. Or where the
> corner would be if truncated.
>
> Bill
>
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>



-- 
-- 
Bruno Barbosa Rodrigues
PhD Student - Physics Department
Universidade Federal de Minas Gerais - UFMG
Belo Horizonte - Brazil



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system.png
(image/png attachment: system.png)

Received on Thu Jul 28 2011 - 15:00:05 PDT
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