you probably need to compare your script to the ones for the test
cases. it seems sander isn't in your path.
On Thu, Jul 28, 2011 at 2:19 PM, lawrence awadetsi
<lorenskobb.googlemail.com> wrote:
> I installed amber 11 about two weeks ago. It's first time I want to use *
> sander.*
> Test cases completed with possible errors. It's unfortunate I can't find the
> test report file.
> I applied the *bugfix.all. *Everything seemed to be working well till I
> tried to use sander.* *
>
> On Thu, Jul 28, 2011 at 10:00 PM, Carlos Simmerling <
> carlos.simmerling.gmail.com> wrote:
>
>> you need to tell us much more about what you have done before this step.
>> Did
>> you install Amber? which version? what steps did you take? did the test
>> cases complete without error? have you successfully run sander before and
>> this is a new problem, or has sander never worked for you?
>>
>>
>> On Thu, Jul 28, 2011 at 1:48 PM, lawrence awadetsi <
>> lorenskobb.googlemail.com> wrote:
>>
>> > Pls, help with this problem:
>> >
>> > *sander -i CG_136_min.in -o CG_136_min.out -c CG_136_cio.inpcrd -p
>> > CG_136_cio.prmtop -r CG_136.rst*
>> > *sander: command not found*
>> > *
>> > *
>> > What should I do?
>> > Thank u.
>> > _______________________________________________
>> > AMBER mailing list
>> > AMBER.ambermd.org
>> > http://lists.ambermd.org/mailman/listinfo/amber
>> >
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Jul 28 2011 - 11:30:07 PDT
