Thanks Jason, but I can't find any thing about "flatwell potential in amber" neither in amber users manual nor on web.
Is there any tutorial or example?
I want to produce virtual wall and a hole on it.
> Date: Sat, 23 Jul 2011 12:22:03 -0400
> From: jason.swails.gmail.com
> To: amber.ambermd.org
> Subject: Re: [AMBER] create walls
>
> Try the NMR restraints (flatwell potential). See the corresponding chapter
> in the Amber manual.
>
> HTH,
> Jason
>
> On Sat, Jul 23, 2011 at 8:27 AM, amir abbasi <amir-abbasi.hotmail.com>wrote:
>
> >
> > Hi Dear Users,
> > I want to make a wall in my simulation and create a cavity (with an
> > arbitrary geometry) on it to force on a DNA to pull it from one side to
> > other.
> > any suggestions?
> >
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> >
>
>
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Candidate
> 352-392-4032
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Received on Mon Jul 25 2011 - 04:30:02 PDT
